Arachis ipaensis: 107625401
Help
Entry
107625401 CDS
T04301
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aip
Arachis ipaensis
Pathway
aip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107625401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aip03021
]
107625401
Enzymes [BR:
aip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107625401
Transcription machinery [BR:
aip03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107625401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
S_100
Motif
Other DBs
NCBI-GeneID:
107625401
NCBI-ProteinID:
XP_020973301
LinkDB
All DBs
Position
B01:13061086..13075493
Genome browser
AA seq
1646 aa
AA seq
DB search
MVLSIEGASNSVEEVVFSFYTDEEVKKNSRVKITNANLLDTIGVPAPGGLYDPALGPSEE
KLPCKTCGQLYHLCPGHFGHIELVSPVYNPLMISLLRNILQRTCFTCCHFRANKELVEKC
SSQLELIMKGDIIGAKRLDSINKDESMYQSDDDDKSQSCSSEQQGESWTSLQFEEAISIV
QKFLKKSSKKCQQCGSINPKISQPTFGWFRKDDLSAADARANVINSDDTILASETITDDR
DTTYGEDINSAGTKKSDAKRHKLSYKLAEQNRLSGPLLPSQVKMTLELLWKNEARFCSYI
NDIQGQGYGKKAGHSMFFLENIFVPPIKFRPPTKGGDMVSEHAHTVLLSKILQANIRLGD
AHLNKKDPSMVLARWMELQQSVNVLFNSNTSGQRDASNGICQLLEKKEGLFRQKMMGKRV
NFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRNAILNGPETHPGATHY
GDKSSVVKLPPKGKLLALTSRKLPSSRGVIMHNGKICDQEFEGKIVYRHLKDGDVVLVNR
QPTLHKPSIMAHIVRVLKGEKTVRMHYANCSTYNADFDGDEINVHFPQDEISRAEAYNIV
NANNQYVKPTSGDPIRALIQDHIVSAALLTKKDTFLSCEAFNQLLYSSGVSMPMVGSFYA
KPGQKVFTSTSESEMFLFPPAIWKPEPLWTGKQVISALLYYVTRGSPPFTVEKNAKIPAN
FFKTRNGNTKGRTTKKSSKMEDEPDEDKLLIYRNDLVCGVVDKAQFGDYGIVHTVQELYG
SNIAGNLLSAFSRLFTNFLQMHGFTCGVDDLLITERKDGERMNQLKSCEEIGDIVHREFV
GVMEGDNIDPTTLQLNIEKKIRSNGDAALISSLNSKTSSGGLKELLSEGIWKPSGKNWIS
LMTTSGAKGSMVNFQQISSHLGQQELEGKRVPRMVSGKTLPSFPPWDCSPRAGGFIIDRF
LTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLECLKVSYDHTVRDSDGSVI
QFRYGEDGVDVHQTSFITKFEALSTNNELVYSNCCRELDRSSPYISKLPDALKGKAENFI
HNFSSKKRNRSSLKRSDFLKLMEHKYVSSLAQPGEAVGVLASQSVGEPATQMTLNTFHLA
GRGEMNVTLGIPRLQEIMMNASEHILTPFMTCPLRADKSMEDAICLSDKLKRITVADIIE
SMEVSVVPVVVCNGQIYRVYKLVMKLYKPKHYPKYTDITLEDWEDTLRVLFVRELEDAIE
NHVALLSKIGGIKDFKTEKSTTNSSDDVDGNETDSAKKGRSNDDDDDDGGADDTEGDEDL
GFEAQKRKQQVTDEVDYEDDPEDETRDNELSEVSDGDYGGSDNEEDKNITLDARDSQGLE
DLAEPDGDVSPPEKINRKSKPKSSGEKEKKKSGPIRKKYDRSIFVEAKGMHFEIHFQFTH
EPHILLAQIAQKTANKVCIQKYGKVGQCKAVTCKESGVIYYGEDQRSREDIPAAEKEKIP
ALQTSGVNFQTFWDLEDHLDVRYIYSNDVHAMLKTYGVEAARETIIREVKNVFKSYGISV
DIRHLMLIADFMTFSGKYRPMSRSGGIAFSTSPFLKMCFETASKFIVEASSHGLVDTLDT
PSSRICLGLPVKMGTGCHDLLQKLEI
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atggttctctcaatcgagggtgcttcgaattctgttgaggaggttgtgttcagtttctac
actgatgaagaggtgaagaagaacagccgcgtcaagattacaaacgctaacttgcttgat
actatcggtgtccccgctcctggtggtttatatgatccagctttgggtccatccgaagag
aaattgccttgtaaaacatgtggtcaattgtatcacctttgtccaggtcattttggtcat
atagagcttgtttcccctgtctacaaccccttgatgatcagtcttcttagaaatattcta
caaagaacttgtttcacttgctgtcattttagggctaataaagaactggtggaaaaatgt
agttcccagttggagcttattatgaaaggggatatcattggggcaaaaagattggattca
attaataaagatgaatccatgtatcaaagtgatgatgatgataagagccagtcttgtagc
tctgaacagcagggagaaagttggacctcgctgcagttcgaagaggcaatttctattgta
cagaaatttttgaagaagtcttctaaaaaatgtcaacagtgtggttccattaatcctaaa
attagccaaccaacctttggatggttccgtaaggatgatctgtcagctgctgatgctaga
gcaaatgtcataaattctgatgatacaatcttggcaagtgagactataaccgatgacagg
gatacaacatatggagaggatatcaactctgctgggaccaagaaaagtgatgcaaaaaga
cacaagttgtcttacaagcttgctgagcaaaatcgactttctggtcctttgttaccatcg
caagttaaaatgacgttagaacttttgtggaaaaatgaggctcgattctgttcctatatt
aatgatattcaaggtcagggatatggaaagaaagcagggcactcaatgttctttcttgag
aatatttttgttccaccaatcaaattccgccctcccactaaaggaggtgatatggtatcg
gagcatgctcatactgttttgttgagtaagattcttcaggctaacataagattaggggat
gcccatctaaacaagaaggatccctcgatggttttagccaggtggatggaacttcagcaa
tctgtaaatgtgctctttaacagtaacacttctggccaaagagatgcaagtaatggaatt
tgtcagttgctggagaagaaggaaggcctcttccgccagaaaatgatgggaaagagggtt
aattttgcatgccgctctgtcatatcaccggatccttatttagcagtgaatgaaattggc
attcctccatattttgctctaaggttaacatatcctgagagagttactccttggaatgta
gtgaagttaaggaatgctattcttaatggtccagaaacccatccaggtgccacacattat
ggcgataaatcatcagtagtaaagcttccaccaaaagggaagttgcttgctttgacatca
aggaaattaccatcatcaagaggggttatcatgcataatggaaagatatgcgatcaagaa
tttgaaggaaaaattgtgtatcgccacttgaaggatggtgatgttgtgcttgtcaataga
cagcctacacttcataaacctagtataatggcgcatatagttcgtgttctgaagggggag
aaaacagtgcgtatgcactatgcgaactgtagtacttacaatgctgattttgacggtgac
gagattaatgtgcattttccacaagatgaaatttcccgtgctgaagcttacaatattgta
aatgccaacaaccaatatgtgaagcctaccagtggtgatccaataagagccttgattcag
gatcatattgtaagtgctgcccttctaacaaaaaaggatacatttttaagctgtgaagca
ttcaatcaacttctctacagttctggtgtatccatgcctatggtgggatctttctatgca
aaacctgggcagaaagttttcacatcaacttccgagagtgaaatgtttttgtttcctcca
gccatatggaagccagagcccctttggacaggaaaacaggtcattagtgcattgttatac
tatgtcactagaggttccccaccatttacagttgagaagaatgcgaaaataccagctaat
tttttcaagactcgaaacggaaacactaaaggacgaaccactaagaagtcaagtaagatg
gaggatgagcctgatgaggacaaattgttgatatatagaaatgatttggtgtgtggcgtg
gttgataaggctcaatttggtgactatggtatagtacatacagtacaagaactttatggc
tcaaacattgcaggaaaccttctttcagcgtttagtcgtttattcacaaacttcttgcag
atgcacgggttcacatgtggagttgatgatcttctgataacagaaagaaaggatggtgaa
agaatgaatcaacttaaaagctgcgaggaaattggtgacattgttcatcgggaatttgtc
ggagtcatggaaggtgataatatagacccaaccacactgcagttgaatattgagaaaaaa
atacgcagtaatggagatgcagccttaataagcagtcttaactccaaaacaagctcagga
ggtttaaaggagctattatccgaaggtatatggaaaccttctgggaaaaattggatttct
cttatgactacatctggagccaagggtagtatggtcaatttccagcagatatcttctcat
ttaggccagcaagagttggaaggaaaacgagttccacgcatggtttctggaaagaccttg
ccaagctttcctccctgggattgttcccctagagcaggagggttcattattgatcgtttt
ctcacagcccttcgtccacaggaatattactttcattgcatggcagggcgtgaagggttg
gttgatactgcagttaaaacttctcggagtggttacctgcaaagatgtctaatgaaaaat
cttgagtgtctcaaagttagttatgatcacactgttcgtgattctgatggttcagttatt
caatttcgttatggagaagatggcgtagatgtccatcaaaccagctttattaccaaattt
gaagccttgtcgactaataatgaactggtttacagcaactgttgccgtgagcttgacaga
tccagtccttatattagcaagttgcctgatgctcttaaaggaaaagctgaaaacttcatt
cataatttttcttcaaagaagagaaatcgtagttcattgaaacgatcagatttcttgaag
ttgatggagcacaagtatgtgtcaagccttgcgcaaccaggagaggcagttggtgtttta
gcctctcaatctgtcggggaaccagcaacacaaatgaccttgaatacttttcatcttgct
ggtcgaggggaaatgaatgtgactcttggaattccgcgtctgcaagagatcatgatgaat
gcctcagaacatatactgactccatttatgacatgccccttgagagctgacaaatcgatg
gaagatgcaatttgtctttccgataagttgaagagaataactgtagctgacattattgaa
agtatggaagtgtctgttgtaccagtagttgtttgtaatggtcagatttacagagtatat
aaacttgtgatgaagctatataaacctaaacactatccgaaatacacggatataacactt
gaagattgggaggacacactaagagttctctttgtgagggagttggaggatgccattgag
aatcatgtggcactgctttccaaaattggtggcattaaagattttaagacagagaaatcc
accacaaatagctcagatgatgtagacggcaatgaaacggattctgcaaagaaaggccgg
agtaatgatgatgacgatgatgatggtggggctgatgacacagaaggggatgaggatctt
ggttttgaagcacagaagagaaaacagcaagttactgatgaggttgattatgaagatgat
cctgaagatgagacacgtgataatgagttatcagaagtatctgacggtgattatggtgga
agtgataatgaggaagataagaacatcacacttgatgcccgtgattctcaaggacttgaa
gacctggcagagcctgatggggatgtctcacctcctgaaaaaattaatcggaaatctaag
cccaaatctagtggtgaaaaagagaagaaaaaatctggaccaataagaaagaaatatgac
agatcaatttttgtggaagcaaaagggatgcattttgagatccacttccaatttactcac
gaaccgcatattttattggctcagattgctcagaaaacagccaataaggtttgcatccag
aagtatggaaaggttggccaatgtaaggctgttacatgcaaagaaagtggagtaatctac
tacggcgaagatcaacgttcaagggaagatatccctgccgccgaaaaggaaaaaatacca
gcacttcaaacttctggtgtgaattttcaaacattttgggacttagaagatcatcttgat
gtaaggtacatttattccaacgatgtccatgctatgttaaagacttatggtgtggaagca
gccagagagaccatcatcagggaagttaaaaatgtcttcaagtcttatgggatatccgta
gacatccggcacttgatgcttatcgccgatttcatgactttctctggtaagtatcgtccg
atgagcagatccggaggcatagcattctctacttcccctttcctcaagatgtgctttgag
acggcctccaagttcatcgtcgaagcatcttctcacggcctggtcgacaccttggacact
ccgtcttctagaatttgtcttggtttgcctgtgaagatgggaaccggttgccatgacttg
ttacagaaactggaaatataa
DBGET
integrated database retrieval system
