Argopecten irradians (bay scallop): 138315481
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Entry
138315481 CDS
T10542
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138315481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
airr03019
]
138315481
Messenger RNA biogenesis [BR:
airr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138315481
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138315481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
DUF6857
MIF4G
Motif
Other DBs
NCBI-GeneID:
138315481
NCBI-ProteinID:
XP_069112635
LinkDB
All DBs
Position
2:40476764..40506997
Genome browser
AA seq
2428 aa
AA seq
DB search
MNLDSLSFALAEISYSVSNLTKKNFKSSVGEISHLVLQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGSLLSKPNFVSTLCYAIDNPLHHQKCLRPSAQLFPQISRVLK
LTRVQEVVFGLALINSSSTETRPHAIQFVKQKLPDLIRSYVDAVESGLRQEGGLQDVDVE
ILHLLLNQIQSNKDNFGLGAEQRDAFYRTLRKDFPHNRVPVILGPLLYPEAEDLAISKLS
DTTNMPKSVLDASLADMVLEAGYGCTISVEECRGKLLQFGIREITPASVAKVLGMMARTP
SGLSEAAGHNQAQMNAAPGSGWPDMGEKADKLGVNTWNVEVFVSVIQDLAPHFNWRDVVL
QLDHSGFMVVNKKGLRLLVQGLIRGLQEVFPVEFVYRPWKNTEGQLSFIKQALRNPDVFC
FGDYPCHTVVIDILKAAPDDENRDIGTWKSLDLVETLLRLSEAGYYQQVSELFKFPIQNC
PDMLVLALLQITPTWNTLKQELISTLMPIFLGNHPNSAVVLHYAWHCQGHSSTIRTLIMH
SMAEWYMRGEQHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKW
LSDKIREHGEPFIQTSVNFLKRRCPQLMGVPAKDEQLPQAKSQMLPTDTIATMLSCLQHC
ASQVSQELSEAILTMVTNASMILNKTRQSQPPPVPKTNLPPTLLNQPTSQSNLLDSLDNA
NTLGIPKSWGMSAVNSGFPQNLTSLSTTATPGSPAKGAGFQPISQPSGFGAMQNITNQLQ
SLSMSNPMGVPPRTPGVNTLGTISSQAVIKQQQQQQAQQQQQQQAQQQQQQQQQQQQLRA
GGMSQVSGEMSTIFPDMSQQFTREVEDEANSYFQRIYNQHPHPTMSIDEVLDMLKRFKDS
PNRREKDVYECMLRNLFEEYRFFPQYPERELHITAVLFGGIIEKGLATYMALGIALRYVL
EALKKQLNSKMYYFGIAALDRFKTRLKDYPQYCQHLAAIPHFQQFPQHLIEFVEFGAKSQ
EPPVMPSISRTLTPTAVGGVSFTGTAPTANPTPTSAAITSVEMPVPPVLTPAPTQAPSPA
AVTTTTTAVTTGTTKPSSLPKPSIASATNIDTLLAGQGNEESSIPPESVQDKVFFIFNNL
SMANMNQKAEELRKEITEDYYAWSAQYLVMKRASIEPNFHTLYANFLDALQISDITQMVI
RETFRNIKVLLRSDKGDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDIDLKALLYEAYH
KGARELLYVVPFTAKVLESCAKSKVFRPPNPWTIGIMNVLAELHQEPDLKLNLKFEIEVL
CKTLTLDLNELNPSTYLKDTSRISTTEPQLSNMVKTLPPPPMPTPQPAEQPLVQLTAPVA
TPPVSTTAPTSTVTTTTPNMPPRPQFAFDEIVTSNLNSIGAHIVTSDHIPLFIGHPNLKQ
VVKMALEKSIQELLPPVVERTIKITLQTCEQIIKKDFALDPEETRMRAAAHHMVRNMTAG
LALITSREPLYLSINNNLKSAFMGTLRVNEGTPPVQKEMIEQAAQLVAQENTELACVFIQ
KTAVEKAIPEIDKRLATEFDLRKHARSEGRRYCDPVILTYQAERMPEQIRLKVGGVTAGQ
IAVYEEFAQNIPGFQPTNDPSLPPGVPKPVPTYSIDDLTQILDRIRRDMEQYMQQLMGIP
TSNPLMVQLHSLMEAILLARNNREVVTSIALLQKAVEGLLDHYNFSQLSSDQDLLVRFRD
CNLMVLKSLQDQRAYGPQWTNKQITRCLIEVGGDNKYNADAVDCLIRSGLVSMQQYDLYL
VQLMENGLNYVGVMFAMQLVQRYCVDDKANSPVTEVDFANTIEALTQVNSRNQRPPEGLA
QMLEGLHPPVDFSLLERAIGGPTSMMQSGISQARELDDPPGLHEKTEFLLREWVNMYHSP
AAGRDSTKAFTAFVQQMHQQGILKTDDLITRFFRLCTEMCVDLCYRALGEQSQNPALVRA
KCFHTLDAFVRLIALLIKHSGDTANTVTKINLLNKVLGIVAGVLLQDHAVRHSEFQQLPY
HRIFIMLFIELNAPEHILENINFQVLTAFCNTFHVLRPAKAPGFAYAWLELLSHRVFIGR
LLALTPQQKGWGMYAQLLLDLFKFLTPFLRNAELTKPTQLLYKGTLRVLLVLLHDFPEFL
CDYHYAFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLADIAHPPRILTNFAK
MIEPASFKKDLDSYLKTRSPVTFLSDLRSNLQLNEPGMRYNIPLMNALVLYVGTQSIQHI
HSKGLTPSMSTIAHSAHMDIFQNLGVDLDTEGRYLFLTSISNQLRYPNSHTYYFSCTLLY
LFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWNHEFVHCAPEIE
KLFESVARSCMQPKSGQSLRETESNEIH
NT seq
7287 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgttatcatttgccttggcagaaataagctattcagtgtccaattta
acaaagaagaatttcaaatcgagcgttggagaaataagtcatcttgttctgcaacacgga
gctgaagctgataggcatttgtttaggtgccttttctctcatgtagacttcagcggtgat
ggtagaagcagcggcaaagactttcaccagacacagtttctgatacaggagtttggttct
ctgctaagcaagccaaattttgtgtcaactttgtgttacgccatcgacaatccattacac
catcaaaagtgtttacgtccatcggcacaactcttccctcaaattagtcgggtcctgaaa
ctaacccgtgtacaggaagttgtgtttggattagcattgataaactcttcaagcacagag
actcgtcctcacgcaatacaatttgtcaaacagaagctaccggatctcatcaggtcttat
gttgacgcagtagagtcaggattgcgtcaggaaggcggtctacaggacgtggacgttgag
atactccacctcctgcttaaccaaattcagagtaacaaggacaactttggacttggtgcg
gaacagagggacgctttctaccggacacttagaaaagatttccctcacaaccgagtccca
gtaatactaggaccattgctataccctgaagcagaagacctagcaatatcaaagctctcg
gatacaacaaacatgccaaaatcagtgctagatgcatctctggcggatatggttttggag
gctgggtacggctgtaccatcagtgttgaagaatgtcgtgggaagctcctacagtttggt
atcagggagatcactccagcatctgtggccaaagtgttaggaatgatggcaagaactcca
tcagggctatcagaggcggcaggacacaaccaagctcagatgaacgctgctccgggcagt
ggctggccagatatgggagaaaaagcagacaaactaggtgtaaacacatggaatgtggag
gtgtttgtcagcgtcattcaggatctggctccccacttcaactggagggatgttgtactg
caacttgatcactctggcttcatggtagtcaataaaaagggactgcgactcttggtgcaa
ggccttatccgaggtctgcaagaagtgtttcctgtagagtttgtgtatcggccatggaaa
aacaccgagggacagttgtcattcatcaaacaagctctgcgtaacccagatgtgttctgt
tttggggattacccttgtcacacagttgtcatagatatccttaaggctgctcccgatgac
gagaaccgcgacatcggaacatggaaatctctggaccttgttgagaccttgctacgacta
tctgaggcgggatactaccaacaggtgtcggaactcttcaagttccccatccagaactgt
ccagacatgcttgtactggccctgctgcagatcacaccaacatggaacaccctgaaacag
gagctgatttctacactgatgccgatcttcttagggaatcatccaaattcagcggtggtt
cttcattacgcttggcactgccagggtcactccagtactatccgaactctaataatgcac
tccatggccgagtggtacatgcgtggagaacaacacgaccagacacgtctctcaaggatt
ctggatgtcgctcaagatcttaaggctttgtccatgctattgaatgccacaccattcgcc
tttgtaattgatttggcctgtctggcttcacgacgggaatatcttaagttggacaaatgg
ctatctgacaaaatcagagagcatggggagcccttcatacagacatcagtgaatttcctg
aagcggcgctgtccacagctgatgggagttccagctaaagacgaacaactgccacaggct
aaaagtcagatgttaccgacggataccatagccaccatgttgtcttgtttacagcactgt
gccagccaagtttcccaagagttgtctgaggcaattctaaccatggtgaccaatgccagt
atgatcctgaacaaaacaagacagtcacagcctccaccagtaccaaaaaccaacctacca
cccactctgttaaaccaacccacgtctcaatcaaatctgctggacagtttggacaatgcc
aatacgcttgggattcctaaatcctggggtatgtcagcagtcaactccggctttccccag
aatctcacttctctaagcacgacggctacacccggatcaccagcaaagggagctggcttc
cagcctatctcacagccaagtggttttggagcaatgcagaacatcacaaaccagctacaa
agtctgtccatgtctaatcccatgggagtaccacccaggaccccgggtgtaaatacgcta
ggaaccatcagttctcaggctgtgatcaaacaacaacagcaacagcaagcacaacagcag
cagcagcagcaagcacaacaacagcaacagcagcagcaacaacaacagcagctacgcgct
ggtggaatgtcccaggttagtggtgaaatgtcgaccattttcccggacatgtcacagcaa
tttacaagggaggtagaagatgaggctaactcatacttccagaggatctacaaccagcac
ccacacccgaccatgtcaattgacgaagtgctggacatgctgaaacgcttcaaggactcg
cctaacaggagggagaaggatgtatatgagtgtatgctacgtaatttatttgaagagtac
aggttcttcccccaataccccgagagagagcttcatattacggctgttctgtttggtggg
atcatcgaaaagggactggcaacttacatggcacttggtattgctctgcgatatgtgctg
gaggccttaaagaaacagctgaattctaagatgtactacttcggaattgctgctcttgat
cgcttcaaaacacgactaaaggactaccctcagtattgccaacatctagcggctatcccc
catttccagcagtttccacaacatcttattgagtttgttgagtttggagcaaaatcacaa
gagccccctgtgatgccttccatatcccgaactttgaccccaacagcagttggtggggtg
tcgtttacagggactgcccccacagcgaaccctacccctaccagtgctgcaatcacatca
gtggaaatgcctgtaccaccagtgttgactccagcaccaacccaggctccatctccagcg
gctgtcaccaccacaaccacagctgttaccacgggcaccacaaaaccaagcagcttaccc
aagccgtccattgcgagtgctacaaacatcgacaccctgctggctggtcaaggcaatgag
gagtcctccataccaccagagtcagtccaggacaaggtcttcttcatcttcaataatctg
tcaatggccaacatgaatcagaaggcagaggagttgaggaaggagataaccgaggattac
tatgcctggtcggcccagtaccttgtgatgaagagagccagtatagaacccaatttccac
accctgtatgcgaacttcctcgacgcactgcaaatctccgacatcactcaaatggtcatt
agggagacttttaggaacatcaaggtattgttgaggagtgacaaaggtgatgccaacttc
tctgaccgaactctgctgaagaaccttggtcattggcttggcatgctcacactggccaag
aacaagcctattctacagatagacatagatctgaaggcactgctgtacgaggcttaccac
aaaggagccagggaattactgtacgtcgtaccattcacagccaaagtgttggagtcctgt
gccaagagcaaggtgttccggcccccaaatccctggacaattggaataatgaatgttcta
gcagaacttcaccaagagccagacctaaagctcaacctcaagtttgagatagaagtgcta
tgtaaaacattgacactggatcttaatgagctgaaccctagcacttacctaaaggatact
tcgcgtatatctactacggagccccagctatccaacatggttaagaccctgccccctccc
cctatgcctacaccacagcctgctgaacagcccttggtacagctcacagcaccggtggcc
accccaccagtgtctacaacagctcccacatccacagtcaccacgacaacgccaaacatg
ccaccaagaccgcagtttgcttttgatgaaattgtgacgtcaaatctcaacagtattgga
gctcacatagtgacaagtgatcatattccactgttcataggacaccctaatctgaagcag
gtggttaagatggcattagaaaagtctatccaggaactactgcctcctgttgtggaacga
accatcaaaatcacactacagacttgtgaacagatcatcaagaaggactttgccctggac
cctgaggagacccgaatgcgggcagcagcccaccatatggtacgcaatatgacagctggt
ctggccctgattacatcccgggagcctctctacctcagtatcaacaacaatctcaagagt
gcctttatgggcacactcagagtcaacgagggtactcccccagtccagaaggagatgata
gagcaggctgctcaacttgtggctcaggaaaacacagaactggcctgtgtgttcatacag
aagacagctgtggagaaggcaatccccgaaatagacaagagattagctactgagtttgat
ctccgcaagcatgccagatcggagggtcgtagatactgtgatcctgttatcctgacctac
caggctgagcgcatgccagaacaaatcagacttaaggttggaggtgtgactgctggacag
atcgcagtgtatgaggagttcgctcagaatatcccaggttttcaacctacaaatgatcca
tcacttcctcctggagtaccaaaaccagttcctacatattcaattgacgacctgacccag
attttggaccgtatccgacgagacatggaacaatatatgcagcagttgatgggtataccc
accagtaacccactgatggtacagctccatagcctaatggaggccattcttctggcccgt
aacaaccgagaggtagtcacctccattgccctactacagaaggcggttgaagggctgttg
gaccactacaacttctctcagctgtcgagtgaccaggatctgttggtacggttcagggac
tgtaacttgatggtgctgaagagtctacaggaccagagagcctatggacctcagtggacc
aataaacagatcaccaggtgcctgattgaggtgggaggagataacaagtacaacgctgat
gctgttgactgtctgatacgatcaggtctggtcagcatgcaacagtatgatctctacctg
gtccagctcatggagaatggtctcaactacgtaggagtcatgtttgccatgcagctggta
cagcgatactgtgtggatgataaggccaacagtcccgtcacagaggttgactttgccaat
acgattgaggccctaacacaggtgaactctcgtaaccaaagaccaccagaaggattggcc
caaatgctggaaggcctacatccccctgtggacttcagcctgttggagcgggctatcgga
ggtccgacctctatgatgcagtctggaatatcccaggctagggaactagacgatccgcct
ggtcttcacgaaaaaaccgagttcctgttacgagagtgggtcaatatgtaccactctcct
gctgctggccgggacagtaccaaagctttcactgcatttgtacaacagatgcaccagcag
ggaatccttaagactgatgatctcatcacacggttcttccgcctctgtactgagatgtgt
gtcgacctgtgttaccgcgctctgggcgaacagtctcagaaccctgctctagtccgtgcc
aagtgctttcacacactcgatgcttttgtccgactcatcgcactcctcatcaaacattcg
ggtgacactgccaacaccgtcaccaagatcaaccttctcaacaaggtgttgggtattgtg
gcgggagtactcctacaggaccatgctgtacgccactcagagtttcagcagctaccatat
catcgcatcttcatcatgctattcattgagctgaacgctccagaacacatccttgagaac
atcaacttccaagtgctcactgcattctgcaacacattccatgtgctaaggccagctaag
gctcctgggtttgcatacgcctggctggagctgctctcacaccgagtgttcatagggagg
ttactggctctcacgccccaacagaagggctggggaatgtacgcacagttgctgctcgac
ttgttcaagttcttgaccccgttcttacgcaatgctgagcttacaaagccaacacaactc
ctctacaagggaacactgcgtgttctgttagtgctactccatgacttcccagagttctta
tgtgactaccattatgccttctgtgatgtcatcccacccaactgtattcaaatgcgcaat
ctcattctgagtgcattcccgcgcaacatgcgattgcccgacccattcacacccaatctc
aaggtggacatgttggccgacatcgcacatccaccccgcatacttaccaactttgccaag
atgattgagccagcctcttttaaaaaggacttggactcctacctgaagacgaggtcacct
gtcaccttcctgtcagacctgcgcagtaatttacagctgaatgagcctggtatgaggtat
aacatccctctgatgaatgccctggtgctgtatgttggtacccagtccatccagcatatc
catagtaagggcctcactccaagtatgtcaaccatcgcacattctgcccacatggacatt
ttccagaaccttggcgttgatctcgatacagaaggtcggtacctgttcctgacctccatc
tctaaccagctgagatacccaaacagtcacacttactacttcagctgtacactactgtac
ctattcgctgaagccaacactgaggccatacaggaacaaattacaagggtgctactggaa
cggttgattgtcaacaggcctcatccctggggacttctcatcacattcatcgagctcata
aaaaatcctcagttcaagttctggaatcacgagtttgtgcattgtgctccagagattgag
aaattgtttgagtcagtcgcccgatcctgtatgcagcccaagtcaggacaaagtctgaga
gagactgaatcaaacgaaattcactga
DBGET
integrated database retrieval system
