Argopecten irradians (bay scallop): 138330612
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Entry
138330612 CDS
T10542
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr04512
ECM-receptor interaction
airr04518
Integrin signaling
airr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138330612
04518 Integrin signaling
138330612
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138330612
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
airr04147
]
138330612
00536 Glycosaminoglycan binding proteins [BR:
airr00536
]
138330612
Exosome [BR:
airr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
138330612
Glycosaminoglycan binding proteins [BR:
airr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138330612
Hyaluronan
Extracellular matrix or blood plasma proteins
138330612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
vWA_SIBA-E
ClpB_D2-small
Motif
Other DBs
NCBI-GeneID:
138330612
NCBI-ProteinID:
XP_069134272
LinkDB
All DBs
Position
9:complement(20474097..20512305)
Genome browser
AA seq
1991 aa
AA seq
DB search
MTRCKLDIAFIVDSSSSIWIKDFERQTSFIHDVVDSFAAVPEDVQIAAVSFSNHVFDEFK
FNAFSDRDSILNAVNNIKYSKGDATRTYLAIERMRTDLFAPGNGARDDAVHVAVVLTDGG
TNPGSYDQYSTSQGKAKTQEEAELAKQAGIYMFAIGIGGGVDEAELRGIASDPDEKFFFI
VDTYDKLDTAHIKSLLACRACRAPTFEFTTTNARRAADARYTRQVSAESAREVCQGDPAD
IIFILDESTSIQSQENFNKELDFVRDVSDMFDIGPDMTHVSVITYSDESQMRFTLSKYTD
KASLEHAIKNIDWSTGNTYTNKALDLLLAQSLSEVRDGVSHIGIVITDGKSTDSKSTKQS
AQNVLATGNIEMFAVGIGNAYKPELDIMASKPSEDYVFQIDNLDALESLKNKFAFRICKE
QPGCSLAEGCNQYKADIVVVSDASTSIGDESFDKQKGFISSIVEKYNIGPEGVQIGMISY
SDDAHTDFSLNTYSTEAEIMTAIENVRYLTGVTYTDKAIEMMTTQGFTSGSGARDGVPKV
GIVITDGVSRDQARTQEMARNAKAQGITLFAIGVGSSIDLAELQGIASDPAPYFTFMVDD
FASLVDHEDILIKKTCAGPSPTVQTKRGIQSEIEDLRSLFQMLEAKLYKGIGTILSVGIN
RGEPAIKMWVIYISIVLTLGSLIQPSVEEVSLKGCKLDIAFVVDSSSSIYSLDFDKQKAF
LHDFINMFETVTDDVQFAAVSFSNHVFDEFNFNSFTSREDILNAVDNIRYSAGDATRTYL
AIERMRNVSFGAGNGAREDAVHIGVVLTDGCTNPGSYDSYTKPAGKKATQQQATMAKSNG
IHMFAIGIGDKYDIEEIRGIASDPDEKFVITVDSYSQLDTEHIKELLACRVCRVSTFERR
LGKRSLYASLFNHHMHETRASQPYTYGNQMQQVSKCEAEKVCRGNHVDIIFILDESTSIG
SPENFRKELNFVRAVSDKFDIGPDMTHVSVITYSNDTQLRFSLNKYTDKPSLEHAIENID
WTTGYTYTNKALDLLLTHSLSEVREGIQHIGIVITDGKSTNYDKTRVSAHNVLATGEIEM
FSIGIGAAYKPELDMMASKPSVDYVYQIDDLDALESLENKFAYRVCKEQPGCAVPERCNT
YKADIVIVSDASTSISEEDFVVQKQFIASLVDKYNIGPNGVQIGMVSFSTNAHVDFSLNS
YHLEKDLKTAIAQVPYLSGDTSTDDALDLMTRQSFTTEAGARAGLPKLAIVITDGSPQRQ
SRTVQMANKAKAQGITIFAIGIGSKVNMDHLKAIASTPAEYYTFMVDDFASLVEHEDILI
KKTCSGQLPVGLSGGSSINQLKCRVDIAFVVDSSSSIWEVDFQTQIRFIEDVVRRFDVSP
NDVQFAAVSYSTYVRDEFKFNDNTNQSDVIKDVSKIRYSEGPATRTYKGIERMRKYLFAP
GNGARDDAIHVGIILTDGTTNPGGYDKLSSRMGKAETQNQAKLIKDDNTYLFAVGIGSSV
NMDELRGIASDPDDTFVIKVDSYNDLNTEKIKEELSYRACYAVTTPRPPVTSPQPITPTK
PQKEDPGEVCQGKPADVFFIIDESSSIHNTSNFRLQLSFVEQVIDYLDVGKDVTRVGVMT
FSDSATMRFPLNQYNSKDEVQTAVRAIDWRGGNTFTDKALKMLLDEGFTVEMGARKGVAQ
IGIIVTDGNSTNPYSTRTEAALVHNKGIYMFAIGVGAVYRPELDILASDPNSDFVFTVDN
LGALNTIKDILAYRVCKEDQNDSPQEICRRQVADIAFIADASTSIGQADFNKLINFIKEV
VDEFDIGVDSTRVGLISFANTSQIEFGLSTYTSSAEVEKALSRVEWRRGLTYTAEALQMM
YDGLFADARGGDVPKIGIIITDGNSREPKKTYAMAAEAKKRGIRMFAIGVGQYIVEDELR
VMSSDLDSYFMVEDFSSLNSIRQALTTKACKRGKKSKGKRTSEIWGEKAAMDNLNYREIE
SLIDILKGRQL
NT seq
5976 nt
NT seq
+upstream
nt +downstream
nt
atgacaagatgtaaactcgacatagccttcatcgttgactcctctagtagtatatggata
aaagatttcgagcgccaaacctccttcatacacgatgttgttgactcgtttgccgccgtg
ccagaggatgtccagattgcagcggtatcgttcagtaatcacgtcttcgacgaattcaaa
ttcaatgccttcagcgacagggactctattctaaacgctgtcaacaacatcaaatacagc
aaaggtgacgccaccagaacatacctggctatagaacgcatgcgcactgacctttttgcg
cctggtaatggagcacgagacgatgccgtacatgttgccgttgttctgaccgatggcggg
accaatccgggatcttatgaccagtactcaacgagccagggcaaggcgaagacacaggaa
gaagcagaactagcgaaacaggctgggatctatatgttcgctatcggaattggaggtggt
gttgatgaagctgaactccgaggaatcgcttcggatcctgacgagaagttcttcttcatt
gttgatacgtatgataaactagataccgcccacataaagagtctcctggcctgtcgtgcg
tgtagagccccgacttttgagtttaccacaaccaatgctcgccgggctgcagatgctcgc
tacactcgccaggtttctgctgaaagcgcaagagaagtttgccaaggtgacccagccgat
atcatcttcatccttgacgaaagcacaagtatccaatcacaggaaaacttcaataaagaa
ctagattttgtccgggatgtgtccgacatgtttgatatcggaccggatatgacgcatgtc
agcgtgatcacctacagtgatgagagtcaaatgcgttttactctgagtaaatacacggac
aaagcgagtcttgagcacgcgataaagaacatcgactggtctaccggaaacacttacacc
aacaaggcccttgaccttttgttagctcagagtctgtccgaggtccgtgatggggtgtcc
catattggaatcgttattaccgacggaaagtccactgactcgaagagtacaaagcaatca
gcacagaacgttctagcaaccggaaatattgagatgttcgctgttggaatcggcaatgct
tacaaacccgaactggacatcatggcgtccaagccgtccgaggattatgtgttccagatt
gataatcttgatgccttggagtctctaaagaacaaattcgctttccgtatttgtaaagaa
caacccggatgcagtttggctgaaggatgcaaccagtacaaagccgacattgtggtggtt
tcggatgcctctacaagtatcggtgatgaaagctttgacaagcagaagggattcatctca
agcattgtggagaaatacaacataggcccagagggtgtacagatcggcatgatctcttac
tcagatgatgctcacaccgacttcagtttgaacacttactccacagaggctgaaatcatg
actgctattgaaaacgtaagatatctgacaggagtgacgtatactgataaggccattgaa
atgatgacgactcaaggattcacttccggatcaggagcacgtgacggtgttccaaaagtc
ggcattgtcatcactgacggtgtatcacgtgatcaagcacgaacacaagaaatggcaagg
aacgctaaggcacagggcatcactctctttgcaatcggtgttggcagtagcattgactta
gccgagctccaggggatagcatctgaccccgccccttattttacattcatggtggacgac
ttcgcctccttggttgatcatgaagacattctgattaagaaaacatgcgcaggtccatca
cctacggttcagactaagagaggaatccaatctgaaattgaggatctacgatctctgttt
caaatgttggaagccaaactatataaaggaataggaacaattctttctgtgggaataaac
cggggagagccagcaatcaagatgtgggtcatttacatctcaatcgtattgacgctggga
tcattgattcagccgtcagtcgaggaggtctcgctgaaaggatgtaagctagacatagcc
tttgtagttgattcctcaagctcgatctattctctggactttgacaaacagaaagccttt
cttcatgattttatcaacatgtttgaaactgttactgatgacgtgcagttcgctgcagtc
tcattcagcaatcacgtgttcgatgaattcaacttcaatagctttacgtcaagagaggac
attttgaatgcggtggataatatacggtacagcgctggtgacgctacaagaacctacctt
gccattgaacggatgcgaaatgtaagttttggagccggaaatggcgcccgcgaggacgct
gtacatatcggtgttgtccttaccgatggttgcactaacccaggttcatatgatagttat
acaaaacctgcggggaagaaagcgacacagcaacaggcaacgatggccaaaagcaacgga
atccatatgtttgctattggcattggagataaatatgacatagaagagatccgtggcata
gcttcagatccggacgagaagtttgtcatcactgttgacagttacagccagctggataca
gaacacataaaggaattattagcttgtagagtctgtcgggtatccactttcgagagaagg
ctgggcaaacgttcgttgtacgcttcactatttaaccatcacatgcacgagacccgagct
agtcagccatacacatacggtaaccaaatgcaacaagttagcaaatgcgaggcggaaaag
gtttgccgaggaaatcatgttgatataattttcattcttgatgagtcaacaagcatcggg
tcaccagaaaactttaggaaggaacttaattttgtccgtgctgtatccgacaagtttgac
atcggaccggatatgacgcatgtaagcgtaatcacctacagtaacgacactcagctgagg
ttctcactgaacaagtacacggacaaacccagccttgagcacgcgatagagaacatcgac
tggaccactggatatacgtacaccaacaaggccctggatcttctcctgacccatagcttg
tccgaggtccgagagggaatccaacacatcggaatcgtcatcacggacgggaaatcgact
aactatgacaagacaagggtgtccgcccacaatgtgttggctactggtgaaatagaaatg
ttctctatcggtataggtgcggcatacaaaccagagctagacatgatggcatcaaaacca
tcagtcgactatgtataccagatagatgatttggacgctttggaatcacttgagaataaa
tttgcttatcgcgtctgcaaagaacaacccggatgtgcagtccctgaaaggtgcaacacg
tacaaagccgacatcgtgatagtatcagacgcctctacaagtatctcagaagaggacttc
gtcgtacagaagcagtttatcgctagcttggtggacaagtacaacattggacctaacggt
gtacagataggaatggtgtcgttctcgactaacgctcatgtcgatttcagtctgaacagc
taccatcttgagaaggatctaaaaacggcaattgcacaggttccgtatttatccggtgat
acgtccactgatgacgcattagacctcatgacaagacaatcattcacgacggaggccgga
gcacgagcaggtctccccaagttagctatcgtgataacggacggatcacctcaacgccaa
agtaggaccgtgcaaatggccaacaaagccaaggctcagggtatcactattttcgccatc
ggtatagggagtaaagtgaatatggaccatctgaaggcgatcgcttccactccagctgag
tattataccttcatggtcgatgattttgcttcgttggtggagcatgaagatatcctcatt
aagaagacatgctcaggccaactgccagtgggcttgtccggtggcagtagcattaaccaa
ctgaaatgtcgggttgatattgcctttgtggtggactcctctagcagtatatgggaggtt
gactttcaaactcaaataaggttcattgaagacgtcgtaagacggtttgacgtcagccct
aatgatgtccaatttgctgcagtttcttatagtacttacgtgcgggatgaattcaaattc
aacgacaatactaaccaatccgatgtcatcaaagacgtaagtaaaattcgctacagtgaa
ggtccggccaccaggacgtacaaaggcattgaacgcatgcgcaaatatttatttgcgcct
ggtaacggcgcacgtgacgatgcaattcacgtgggtatcattttgacagatgggaccact
aaccccggcggttatgacaaactttcctccagaatgggtaaggctgaaacgcaaaatcaa
gctaagttaatcaaagatgataacacatatttgtttgctgtgggcatcggttcctctgta
aatatggacgaactgcgagggatagcgtctgatcctgacgatacctttgtcatcaaagtt
gacagctacaatgacttaaacacagagaagatcaaagaggaactatcgtatagggcctgt
tatgctgtcaccacaccgcggccccctgtaacaagccctcaaccaatcacaccgacgaaa
cctcaaaaagaagacccaggagaggtttgtcaaggaaaaccggcggatgtgtttttcata
attgacgagtcaagtagcatccacaatacttcgaacttccggttgcaactctcctttgtg
gaacaagttatcgactacttagacgtaggaaaagatgttacacgtgttggggtcatgacc
tttagtgatagtgctacaatgcgcttcccacttaaccagtacaatagtaaagatgaggtt
caaacagccgtaagggctatagattggagaggaggaaacaccttcactgataaagccctc
aaaatgctcctggacgaggggtttaccgtggaaatgggagctcggaagggcgtagcacaa
ataggaattatcgtcacagacggaaattctacaaacccttacagcacgcgtactgaagct
gccctggtccacaacaaaggcatatatatgtttgcgatcggtgtgggagccgtttacaga
cctgaattagacatacttgcatcagatccgaattctgacttcgttttcactgtcgacaac
cttggagctctcaacacaatcaaagatattttggcctacagggtctgcaaagaggaccag
aatgacagtccacaggaaatttgtagaagacaggttgcagacattgcattcatcgccgat
gcttctactagtatcggacaggcagactttaataaactcatcaattttatcaaggaagtt
gtcgatgagtttgacatcggtgttgattccacccgagttggcctcatatccttcgctaat
acgtcacagattgagttcggtctctctacctacacgtcctcagcggaggtagaaaaggct
ctctcaagggtcgaatggaggagaggactaacgtatactgccgaggctttacaaatgatg
tacgatgggttgttcgcagacgcacgaggcggagatgttccgaaaatagggataataatc
acagatggaaactcacgagaaccaaagaaaacatacgctatggcggcagaggcaaagaag
cgtggaatacgcatgtttgcgataggcgttgggcagtacattgttgaggatgaactgaga
gtgatgtcttcagatctggatagttacttcatggtcgaggacttctcttcattaaactcc
attcgtcaagctctaactacgaaagcctgtaaaagagggaagaaatcgaagggaaagcga
acttccgaaatctggggagagaaggcagcaatggacaacttgaactatcgggaaatagag
tcactcattgacatcctgaaggggcgacaactttga
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integrated database retrieval system
