Histoplasma mississippiense: HCAG_00094
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Entry
HCAG_00094 CDS
T02229
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aje
Histoplasma mississippiense
Pathway
aje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCAG_00094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aje03019
]
HCAG_00094
Messenger RNA biogenesis [BR:
aje03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
HCAG_00094
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
HCAG_00094
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
5450482
NCBI-ProteinID:
XP_001543048
LinkDB
All DBs
AA seq
2348 aa
AA seq
DB search
MSFPSPAQSLIASGTDKPSASRTARSHQSVWGTSASQSNVRRGLTPLSTNISNSNSSVSP
PRRPAQPHSPAPSVSATSPLTSSFSAVLTSSNRIPTNRHNSSPAPSHASFTSHQQAGSHQ
QQQQQQSQPISSPKIRSLTPSSTSHLATSTTSGGGSGGGGGGGGGGGVGAGISRSAAFSP
LLTGNTINSPTGFPSDKAGATATSGANSGQSSLSKISVAQVFLLLDSINEKEGKEKWETK
AAQIHKLVDSNGMEVFAKYFRRLLSGNAPQIFPGINKVVENAGNYPLLVQEVHKVSQDPD
QSQKIAETIDASDGDIFRDFDLSTFLEHFKLDPITKVALTLAFKNVSKADLRTKADAILT
NSTTQFLHSLSTISDTNKEFTTSFISLTLERFILHSPRNFDEEIKQKLVYACRARYQSAD
MDIPPEIESALQMFGLSDPQLTLVRQIQARGPKSMGSQDSIVETINSAGPSGWSEEQIAS
ALLYIIISPNWLQFSPELLLTTVQNHQRGETFSWPKLMRGFDKVGMVIDPNQFGRLFNVL
HVASHDNPSLDIQALWSGEWENRDTQLSFLTAALSSNIDISRIPKFRSTYPLDIFSDASE
TIRQQAEQAQHSLLRSRDAVRAIFDLILKTPGTWSLPDSQRFVKTVLQHDLPIFLCSAFA
IPQPWTTVQVNFVMRSFSIFISKRQDGYQFALHGVWKLNREWVVEQLFHAFTQDPSCTEL
IYDHAVEHGWLDYILEFTNGLAMDLASLAHRKDDYDLEQWVKKAAQKSPIDMGNLLLKFL
RIKAEDELRVQRKEQPTPQMVSLSVKTVFALLQILEDYIVDHETLTPIQRICLQAYPRLI
NYGEGFDDIIEVNGAHGNAIPVEIDKQMQDLFGKMYHEELSLREILELMRRYKTSRDPAE
QDLFTCMVHGLVDEYNCYHTYPLEALTKTAVMFGGIINFKLISGIPLKVGLGMILDAVRE
HEPHQPMYKFGVEAIEQLISRLPEWAGFCNLLLQIPSLQGTPIYRKAEEVLRDQGHHPIN
ETDGAGLNGLSDGMAMTNGNIDELLAPDTTHRKFSSLHVDPPLRPEIYRDPDEEAHDKIL
FILNNVSEQNIEGKLRDLKDVLQEEHHQWFASYLVEERAKLQPNFQQLYLDLLELIGDKT
LWMEVLRETYVSAIRLLNAESTLNSATERTYLKNLGGWLGSLTIAKDKPIKHRNIYFKDL
LIEAFDSQRLMVVIPFTCKVLVQAMKSTIFKPPNPWLMDIIALLIEIYHFAELKMILKFE
IEVLCGDLSLDYKTIEPSTCIRERPTQLEDGISSANIPEGLETFEDMSLSNISHAIRNER
IPQTSIMPSLPNLDQILVFPPSASTMADPGILRQIVHSAVERAIAEIITPVVERSITIAS
ISTAQLILKDFAMEPDEEKVRQAAGTMVRALAGSLALVTCKEPLKMSMTNYIRVIQQEFS
DQPMPEGLILMCVNDNLDAACGIVEKAAEEKSLPEIEKVIESQLEARRRHRAARPNEPFI
DPSISRWGFFIPEPFKQIPGGLNKEQLAIYENFARQSRGTGPTHIQNASTDSGKQIPDVL
QESFPAIPNLSTPAEQPAVPHHVAQTQQESSLQQPAITAPQSQINGFLETANPREKVETL
ISQLQLAARNASEEHLKDLGRDSSILQDYNQVFRTILSAPNGEDLARLAALKICTTLYSR
TESRLEVELLVHILAKICELSSLVARYTWAVLADVDDEHMFNVPVTVALIDAGLLDLQRV
DMILTKLIQEKNVAALELLSNLIDRVLLNDEPSALRSDFSGSLGAMNKLVVENPDLPVAK
DIIRKLRESGIPETVNALLTDQARSKRDQMEYIFSEWIGVYKFARSNDRTYSTFLKDMHQ
RQVMNNQEDSALFFRLSIDISVAMFEHECQNPNGNLDEAFLYIDALAKLVILLVKFQGES
SGAVKASKPVYLNSILSLLVLVLNHHQVMRGENFNQRVFFRLFSSILCEYSTCALQNTDQ
HKEMMAVFADKFLSLQPKHAPGFVYGWLALISHRIFMSGLLNMPDQSGWESYCEIIEVLL
PYIGEQQKPANVSFVAKDIYKGVLRILLILHHDFPEFVAENHYRFCNVIPSHCAQLRNLV
LSAYPSSFQKLPDPFREGLKVDRLDEIRKAPKVAGDISAPLQRANLINIVDNAFRTAVPD
STIQHICDVLSNPVAKATGQFFTPINVDVVLMNSLVLYVGQNAVVSTGQKGNIPAAFSNS
PHTALLEKLSKVLQPEALYYFLSAIANQLRYPNSHTHYFSYVILHLFGYEQPAQQGSDIR
EQIVRVLLERLIVHRPHPWGLIITLQELLQNDSYTFFRLPFIQAVPEINNLFDALLQHIQ
QQSPRALA
NT seq
7047 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcccttcccccgctcaatctttgattgcttctggcaccgacaagccatcagct
tccaggacggcgagatcccaccagtctgtctggggtaccagtgcgtcccaatctaacgtc
cgccgtggcctgacgccgctatccaccaatatatccaactcaaactccagtgtatcacct
ccccggcgtcctgcccagcctcatagtccagctcctagcgtttctgcgacatctcccctt
acctccagcttttccgcagtcctgacatcctctaatcgcattcccaccaaccgccacaac
tcttctccggcgccttctcacgcctccttcacttcccaccaacaagctggctcacaccaa
cagcagcaacagcaacaaagccagccaatttcatcacccaaaatcagatctcttacccct
tcatcaacatcgcacctggctacctcgacgacctcaggaggaggtagtgggggtggagga
ggtggtggaggtggtggtggtgtgggcgcgggtatatccaggagtgctgcgttctctccc
ctattgacagggaacacaatcaactcaccaacgggattcccctctgataaggccggagct
accgcgacatcaggtgcaaattctggccagtcatctctgtccaaaatctccgtagctcag
gtgttcctgctattggactccatcaacgagaaggaagggaaagaaaagtgggaaactaaa
gctgcacagattcacaagctcgttgattcaaacggcatggaagtttttgcgaagtatttt
cgtcgcctactttccggcaatgccccccagatctttccgggaattaacaaggtggtggaa
aatgcagggaactatcctttgctagtacaggaggttcacaaggtgtcacaggatcctgac
caaagccagaaaattgcagagacaattgatgcatctgatggtgatatctttcgtgatttt
gacctctcaacattcctcgagcattttaaattggatcccattaccaaagtcgcgttgaca
ctcgccttcaagaatgtcagcaaagcagatttgcgcacaaaagccgatgcaattcttacc
aattccactacccagttcctacatagcctctctaccatttctgatacgaacaaagaattt
accacgtcatttatcagtctcaccctagagcgcttcatcctgcactctcctcgtaatttc
gacgaggaaattaagcaaaaacttgtgtatgcgtgccgagcgcgataccaatccgcggac
atggacataccacctgaaatcgaatcagctttgcaaatgtttgggttatctgatccacaa
ttgaccttggttcgccagatacaagctcgagggcctaagtcgatgggcagtcaggacagc
atagttgaaaccataaattcagcaggtcccagtggttggagtgaagaacagattgcttct
gcgctattgtatattataatatcccctaattggcttcagttctctcccgaattacttctc
accaccgtccaaaatcaccaacgaggtgaaacttttagctggccaaagctcatgcgtggt
ttcgacaaggttggcatggtcatcgatccgaatcagtttggtcgactatttaatgtactc
catgtcgcttctcatgataacccaagtcttgatattcaagcgctctggagcggagaatgg
gaaaatcgagacacccagttgtcctttttaaccgcagctctctcctccaacattgacatt
tcccgcatccccaagttccgttcgacataccctttggacatttttagcgatgcttctgaa
actatccgtcagcaagctgagcaggcccaacatagtttacttcgctcccgtgatgcagtt
agggccatctttgatcttattctcaagacaccaggaacatggagccttccggatagtcaa
agattcgtcaaaacagttcttcaacatgatctgcccatattcctttgctctgcgttcgcc
attcctcagccgtggactactgttcaggtcaacttcgttatgcgatctttctccattttc
atctccaagcgccaggatggctatcaattcgcacttcatggcgtttggaaacttaaccga
gagtgggttgtagaacaactcttccacgcatttactcaggatccttcgtgcactgaactg
atctacgaccatgccgtagagcatggttggttagactatattttggaatttaccaacggc
ctagccatggaccttgcatctttagcgcacaggaaggacgactatgatctcgaacagtgg
gttaagaaggcggcccagaagtctcctattgacatgggaaatttgttattgaaattcctg
cgaataaaagctgaggacgaacttcgcgtccaacggaaagaacagccaactccacagatg
gtcagtctgtcagttaaaaccgtctttgctctcctccaaattctcgaagactacatcgtc
gatcatgaaactttgactcccatccaacgaatttgtcttcaagcttacccacgattgata
aattacggtgaaggattcgatgatatcattgaggtcaacggcgctcatggtaacgcaatt
ccggttgaaattgataaacagatgcaagatttattcggcaaaatgtatcacgaagaactt
tccctgcgtgaaatactcgagctaatgcgacgatacaaaacatcgcgcgaccccgctgag
caagatttatttacatgtatggtccatggcctggtcgatgaatacaactgctaccataca
tatccactcgaggcattaacaaaaactgctgtcatgttcggtggcattattaatttcaag
ctaatatctggtatcccgctcaaagttggcctcggaatgatcctagacgcagtgcgggag
catgagccccatcaaccgatgtataagtttggtgtcgaagccatagagcaattaattagt
cgcctcccagaatgggctgggttttgcaaccttcttctacaaatcccctctcttcaagga
acgccgatataccgcaaagcagaagaagtgcttcgagaccaaggccaccacccaattaac
gaaaccgatggggctggattaaatggactgtccgatgggatggctatgacaaacggcaat
atcgatgaactcttggctcctgacaccactcatcgcaaattctcttccctccacgtggat
ccgccgcttcgccctgaaatatatcgtgacccggatgaagaagctcatgacaaaatcctt
ttcattttaaataatgtctccgagcaaaatatcgagggtaagttaagagatctaaaagat
gttttgcaagaagaacatcaccaatggttcgcctcataccttgttgaggaacgagcgaaa
ttgcaaccgaacttccagcaactttacctcgaccttttagagcttattggcgacaaaacc
ctctggatggaagttcttagagaaacatatgttagcgcaatccgattgctaaatgcagaa
tccaccttgaactcagcgactgaacgcacgtacttgaaaaatttaggcggatggcttggc
tctttgactattgccaaggataaaccaataaaacatcgaaacatctacttcaaggacctc
ctaattgaagcgtttgatagccaacgcctcatggttgtcatacctttcacctgcaaggtg
ttggtgcaagccatgaaatccacaattttcaagccaccaaacccatggttaatggatatc
attgccttgttgatcgagatataccattttgcggaactgaaaatgattctcaaatttgaa
atcgaagttctctgtggggatttaagtcttgattacaagacaatcgagccatcgacgtgt
attagggaacgccctacgcaactagaggatggcatttcttcggcaaacattcctgagggt
ctggaaacctttgaagatatgtccctaagtaacattagccatgctatccgcaacgaacga
ataccccaaacctctataatgcctagtctccctaacctggatcaaatcttggtgttccct
ccttctgctagtacgatggcagatcctggcatcctccggcaaattgttcatagcgctgta
gagcgggcgattgctgaaataatcacccccgtcgtcgaacgttctatcaccattgcgtct
atatcaacggcacagcttattctgaaggattttgcaatggaacctgacgaggagaaagtt
cgccaggctgcaggaacgatggttcgagcgctcgcaggcagtttagctctggtaacatgc
aaggagcccctaaaaatgagcatgacgaattatattagagtgattcaacaagaattctca
gaccagccgatgcctgaagggcttatcctcatgtgtgtcaatgataacctagacgctgcg
tgtggtatcgttgaaaaggcagcggaggaaaagtctctgcccgaaatcgaaaaagtcatt
gaatcgcaactagaggctcgacgccgccaccgtgcagcacgtcctaacgaacccttcatc
gatccttccatcagtcgttggggattttttatcccggaaccatttaagcaaatcccagga
ggtctcaacaaagaacagctggctatatatgagaactttgctcgacaatcacgaggaact
ggacctactcacatccagaatgcatcaactgactcggggaaacaaattccggacgttctc
caggagtctttcccagcaattcctaacctgtctacaccagccgaacaacctgctgtccct
caccacgtagcacagacgcaacaagaatccagccttcagcaacctgcgattacagcgcct
caaagccaaataaacggtttccttgaaacagccaacccacgtgagaaagtagaaacactc
atttctcagttacaactagcggctcggaatgcttcggaggagcacctcaaagatcttggg
cgtgatagcagcatccttcaggactataatcaagtcttccgtactattcttagcgctcct
aacggtgaagatttagcaagattagctgctttaaaaatatgcacgaccttgtattcgcgg
actgagagccgtttggaggttgagctgctggttcacatcctggccaagatctgcgagctg
tcttcacttgttgccaggtatacctgggctgttcttgccgatgtggacgatgagcatatg
ttcaatgttcctgtcactgtcgcgcttattgatgcagggttattggatcttcaacgcgtc
gacatgattctcacgaaactcatccaagaaaagaacgttgctgccctggaattactgtcc
aatcttattgatcgagtccttctaaacgacgaaccctccgctttgcgatcggatttctca
ggcagcctgggcgcaatgaataagttggttgtcgagaacccagatctccccgttgccaaa
gacatcatccggaagctccgggaatcaggtattccagaaaccgtcaatgcgctccttacg
gatcaagcccgttcaaagcgcgatcaaatggaatacatttttagcgaatggatcggcgtg
tacaaattcgcgcgctccaatgataggacatacagtacatttctcaaggatatgcaccag
agacaagtcatgaacaatcaagaagattcagccttgtttttcagactcagcatcgatatt
tcagtcgccatgttcgagcatgagtgccagaatccaaatgggaacctcgatgaagcgttc
ttgtatattgatgcgctcgcaaagttggtaatcttgcttgtgaaattccagggcgagagc
agcggtgctgttaaagccagcaaacctgtctacttgaattctattctgtcgcttctagtt
cttgtcctgaaccatcaccaagtgatgcgaggggagaactttaaccagcgggtatttttc
aggcttttctccagcattctttgtgaatattccacatgtgctcttcaaaatacagatcag
cataaagaaatgatggctgtctttgcggacaaatttttgtccctgcagcctaagcatgca
cctggatttgtttacggatggctcgccctgatttcacatcggattttcatgtcgggattg
cttaatatgccggatcagtcgggttgggagtcatattgcgaaataattgaagttttactc
ccgtatattggcgaacaacagaagccggccaatgtttcatttgtcgctaaggacatatac
aaaggcgttcttcgcattttacttattcttcatcacgatttccccgagttcgtagcagag
aaccactaccgattttgcaatgttatcccgtctcactgcgcacaactgcgaaatcttgtt
ctgagcgcctacccatcatcatttcagaaactccccgatccatttagagaaggcctgaaa
gttgataggttagatgaaattcgaaaggcgccgaaggtcgcgggtgatatatccgctcct
cttcaacgagcaaatttgatcaatatagtcgacaatgccttccgaaccgctgttcctgat
agtacgattcagcatatttgtgatgttctatcaaacccggttgccaaagcaactggacag
ttcttcactcctatcaatgtcgatgttgttctcatgaattctctcgtcttgtacgttgga
caaaatgccgttgtttcgactggtcagaaaggcaatataccagcagctttcagcaattct
ccccatacagctctgttggagaagctctcaaaggttctacaaccggaagctctgtactac
ttcctaagtgccatcgccaaccaactgcgataccccaacagccatacgcattacttcagc
tacgtcatcctccaccttttcggatatgaacagcctgctcaacaaggatcggatattcgt
gaacagattgttcgcgtactccttgagcgactgatagttcatcgaccgcatccatggggt
ttgatcattactctccaggagctactacaaaatgacagttatacctttttccgcttgcca
ttcattcaggcggtacccgagatcaataatctctttgacgccctgcttcagcacatccag
cagcaaagcccaagggccctagcttag
DBGET
integrated database retrieval system
