Histoplasma mississippiense: HCAG_02364
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Entry
HCAG_02364 CDS
T02229
Name
(RefSeq) DNA-directed RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
aje
Histoplasma mississippiense
Pathway
aje03020
RNA polymerase
aje03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aje00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCAG_02364
09124 Replication and repair
03420 Nucleotide excision repair
HCAG_02364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aje03021
]
HCAG_02364
03400 DNA repair and recombination proteins [BR:
aje03400
]
HCAG_02364
Enzymes [BR:
aje01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCAG_02364
Transcription machinery [BR:
aje03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
HCAG_02364
DNA repair and recombination proteins [BR:
aje03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
HCAG_02364
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
5449238
NCBI-ProteinID:
XP_001542193
LinkDB
All DBs
AA seq
1747 aa
AA seq
DB search
MASVNFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRL
GTIDRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTT
DQKYLEALRFRDPKRRFDAIWRLSKDVLICEADPSPDDDEPFAKEPSKPVRSHGGCGNIQ
PQIRKEGISLVGTWKPSKNRDMMDDMDVQQPEKRQITPQMALNIFKTISEEDVRLMGLSN
DYARPEWMIITVLPVPPPPVRPSVLIGGSGSGQRGEDDLTYKLAEIVRANQNVTRCEQEG
SPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGK
RVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPGAR
YVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKESMMGHRIRV
MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMG
IVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPRWTGKQMISMVL
PPGLNLLRVDRDKAPLSEKFSPLADGGLLVHGGELMYGMFSKKTVGATGGGVIHTIFNEY
GPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIEKIEEAVRVRKEEVDEITASA
TDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIIN
ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA
MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAH
IENQRVDIIKCSDERFRDRYRVDLMDPDRTLSPNVLEQATEIAGDIEVQKYLDEEWEQLL
KDRAFMRSVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQVRAMLERL
VVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIESRFSKAM
ANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMT
VYQDPSRAMDKESVKQLRSVVEHTSLRSVTETTEIYYDPDIQSTVIEADRDMVESYFIIP
EDVADDSSRQSKWLLRIILSRPKLLDKSLTVQDVAMKIKDAYPQDIAVIFSDNNADEQVI
RIRQIQDSKQDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFINEKSRVRVLEDGS
LHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFGIEATRTALLRE
LTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLD
AAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQDMLMGVVSSNAGLMAADGKGLLSD
GAATPYDSSSPLQDNMYIGTPDPDSNFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARS
PGGGYSPSSPFNTSPTSPRYSPSSGYSPTSPGMSITSPRFMSSPGFSPASPAFAPTSPAY
SPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGV
STGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTF
NPISPRQ
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgtcaatttcccttactcgaaggcgcagttgcgcacaattaaggaaatacag
tttggccttctttcgccggaggagatcaaaaggatgagcgttgtccatgttgagtacccg
gagactatggatgagcaacgacagcgcccacgagagaaaggtctaaatgaccctcgtctt
ggcaccattgatcgaaattggcgctgcgctacctgtgaagaagggatcaatgattgccct
ggacattttggtcatatcgagctatctactcctgtgttccatattggtttcctgactaag
atcaagaaactgttggaaactgtttgccacaactgtggaaagatcaaggcaaatacgacc
gatcaaaagtatttggaagcgctccgtttccgcgatccaaagagacgttttgatgcgatt
tggcgtttgtcaaaagatgtcttgatttgcgaagctgaccctagtcccgatgatgacgaa
ccgttcgccaaagaaccttccaagcctgtgcgctcccatggtggttgcggaaatatacaa
cctcaaatacgtaaggagggaattagtttggttgggacctggaaacctagcaagaatcgt
gatatgatggatgatatggatgtacaacaaccagagaaaagacagattactccacagatg
gccctcaacatattcaagaccatctcggaagaagatgttcgtttgatggggttgagcaat
gattatgcaaggcctgagtggatgattatcacagttcttcccgtacctccacctccagtt
cgtcccagtgttctaatcggcgggagtggaagcggtcagcgtggagaagacgacttgaca
tataaactggcagagattgtgcgcgcgaatcagaatgtcacccgatgcgaacaggaagga
tctcctgagcacgtggtccgtgaatttgagtctcttttgcaatatcatgttgcaacctac
atggacaatgatattgccggacagccacaagctatgcaaaagtctaaccgacctgtcaaa
gctatccgtggccgcttaaagggtaaagaaggtcgcctgcgtcagaacttgatgggcaaa
cgtgtcgatttttccgcacgtacggttattactggtgacccgaatttgtctttggatgaa
gttggagttccaatcagcattgcacaaactttaacttaccccgaggtcgtcactcctttc
aatatcgccaagctaggtgagcttgtggataacggccctgatattcaccctggtgcccgt
tatgttattcgcagcactggtgaacgcattgacttgcgccatcataagggtggaggtggg
aggaacttcctacagtatggatggagagtggagcgtcatatcgtggatggcgatgtcatc
ctattcaatcggcaaccgtccttgcacaaggaatctatgatgggccaccgtattcgtgtg
atgccctactcgactttccgactaaatctgtctgtcactacaccttacaacgccgatttc
gacggtgatgaaatgaacttgcatgttccccaaagcgaagaggctcgcgctgaactcagt
caactttgtatggtaccattgcagattgtatcccctcaacgaaacggtccgttgatgggt
attgtccaggatactctttgtggaatctacaaaatctgccgtcgtgatgttttcttaacg
aaagagcaggtcatgaatattctactctgggtccctgattgggacggcgtaataccccag
cccgcaattttgaaaccccggcctagatggactggaaaacaaatgatcagtatggtcctt
cctcctggtctcaacctcctccgggttgatcgagacaaggcacctctttctgagaaattc
tcccctctagctgatggtggactgttagtgcacggtggcgaacttatgtacggaatgttt
tccaagaagacagttggagccacaggggggggtgtcattcatactatcttcaatgagtat
gggcctgagacggcgatgaatttcttcaatggcgcccaaactgtagtcaactattggctg
ctccaccacggcttcagtattggaattggtgatacaattccagacctagctacaatcgaa
aagattgaggaagcagttcgtgtgagaaaggaggaagtcgatgagatcacagctagtgca
accgacaacaccctagagcctttgccaggtatgaatgtccgtgagacctttgagagcaaa
gtatctcgcgcccttaacaatgcccgtgatgaagccggaacggagaccgaaaaaagcttc
aaggacttgaacaacgctgtccagatggcccgttctggttcaaagggctcgatcatcaac
atttctcaaatgactgcggttgtcggccagcaatctgtcgaaggcaaacgtattccattc
ggtttcaaatatcgtaccttgccacatttcacaaaggatgattattcgccagagtctcgt
ggcttcgtcgaaaattcgtatctccgtggtctaaccccgactgaattcttcttccatgct
atggctggtcgtgaaggtcttattgacactgccgtcaagacagctgaaactggatatatc
cagcggaagcttgtcaaggctcttgaagaggtcatggttaaatacgatggtactgtgcgt
aactcgctgggggatgttgtacagttcctttacggagaagacggtttggatggcgcacat
attgaaaatcaacgcgttgatattatcaaatgctcggacgaaagattccgtgatagatat
cgagtcgatctgatggatcctgacagaactctatctcccaatgtattggagcaagccacg
gaaattgctggcgatatcgaggtacagaagtatcttgacgaagaatgggagcagctcctg
aaggaccgtgctttcatgcgtagcgttgccaaagaggacgaagaaatgatgcaattgcca
attaatgttcagcgtattctcgagtcggcaaaaactatatttagaattagagaaggcgcc
attagcgacttgcatcctgcagaggtcatacctcaagtcagagcgatgttggaacgcctt
gtcgttgttcgtggtgacgatgtgatttcccgcgaagcacaagaaagtgccacattgctc
ttcaaggcacagctccgttcccgccttgcattccgtagactcgttgtggaatattcactt
aacagactcgcattccagcacgtattgggtgctattgaaagtcgattctccaaggcgatg
gcgaaccctggtgaaatggttggtgttttggctgcacaatcaattggagagccagcaaca
cagatgaccctgaatactttccattttgctggtgtctcgtccaagaacgtcacccttggt
gtgcctcgtttgaaggaaattctcaatgttgccactaatatcaaaaccccttctatgact
gtctatcaagaccctagtcgcgccatggacaaggaatctgtcaaacaactccgtagtgtt
gttgagcataccagtttgaggtcggttacagaaacaacagagatctactacgatcccgat
atccaatctaccgtgattgaagcggaccgcgacatggttgaatcatacttcattatccct
gaagatgtcgcagatgattcgagccgtcaatccaaatggttacttagaatcattcttagc
cggccgaagctcctggacaaaagtcttacggttcaagatgttgcaatgaaaatcaaagac
gcttatccgcaagatattgcggttatatttagcgataataacgctgatgagcaggtcatt
cgtattcgacaaattcaagactctaagcaggatgacgatgatgatgacaccgaatatgac
gtgacactaaagaagctggaaagtcatttgcttgatacccttactttacgaggggtggct
ggcattgaacgtgctttcatcaatgagaaatcgagagttcgcgtcttagaggatggatct
ctgcatcaaagcgctgatgaccctctatgtaaggagtgggttctagaaaccagtggatcg
gcactcggcgaagtcttgaccatccctggcgtggatacaactcgcacgtattctaaccag
ttcattgagattctggaagtattcggtatcgaagctactcgtactgcacttttgcgagag
ttaacccaggtgcttgcttttgatggatcgtacgtcaatcatcgtcatttggccctcctt
gtcgatgttatgacttcacgaggcttccttatggcagtaactagacatggtatcaaccgt
gctgatactggtgctttgatgcgatgttcatttgaggaaacagtggagattctacttgat
gccgctgcatttgcagagttagatgactgccgtggggtatctgagaacctgatcttggga
cagatggcaccagctggaactggggagtttgatgtctaccttgatcaggatatgcttatg
ggagtcgtttcgagcaacgctggtctaatggcggcagatggcaaaggattactcagtgat
ggagctgccacaccttatgatagcagctccccattgcaggacaacatgtacattggcaca
ccagaccctgactccaatttctcacctatcagacaagctggatctgagacccctgcaggg
ttcactgaatatcagccttccggatttagtggtggttttagccctcatggcgcgagaagc
cccggtggaggctattcgcctagcagtcctttcaataccagcccgacctctcctcgctat
tctccatcctctgggtactctccaacctctcctggtatgagcattacgagtcctcgattc
atgtcctctcctgggttttcgccagccagtccagctttcgcgccaacttcgcctgcctat
tcgccaacctctccgagctatcaacaatcaccgacttcgccatcgtattcgcctacgtct
cctggtttctctcccacgtcacctagttacagtccaacgtctcccagttttagccctgct
tctcctgcttttagccctacttctcctagttatagccctacaagtcctgcgctcggagtt
tcgactggcagacacctttctccaacttcccctacctctcctaaatatactcctacttcc
cctggttggtctccaaccagtccagagacctactcacccacctcacccaacttctctggc
tcaccaacttctccgggaggtccaacatcccctggctacagcccgacctcccccactttc
aaccctatatctccacgccagtag
DBGET
integrated database retrieval system
