Apostichopus japonicus (Japanese sea cucumber): 139965568
Help
Entry
139965568 CDS
T10891
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139965568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139965568
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139965568
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139965568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
139965568
NCBI-ProteinID:
XP_071824169
LinkDB
All DBs
Position
3:complement(24239339..24279640)
Genome browser
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISILVANLTKKNYKQSVGEVARLVSQHGPEADRHLLRCLFSAVDFSSE
SKTNGKDAHQTQYLVDECSQLVAKPSFISSLCFAVDNPLSHQKTLKPSPQLLHQISKVLK
LTKVKEVVFGLALTHSASTDLKNFALQYVKQRLPDFLRLYIDADQHSRPEASLADLSVEI
LHLLLTHLLYRSKDQLGIPATQTAAFLKALKKEFPVEQVPVVLVPLLYSDRQDITMDRIT
NDPSNIPKGVMDASLADMLQEMGYACCASPDDCKKTLKMVNPNLNPGVVAKVIGMMARTH
DTLTDSHPLQTPGGTIWGDGRETRSDGSANSWNIDAFVDVIKEVAPHMNFHVVAMELDHP
ALIIKDGKALQMVKNAIVRATQTEFPVEILFKVWNNKDGQLSWIQQALKFPEVFCFSDFQ
SSRKVVTDILKSPPEDENKKIATWKSLELVEVLLKLAETEKADQVQLLFTFPIKNCPDLL
LLALLQVQSSWSFMKSELIRALMPTFLGNHANSGIILHYAWSGQGRSPTIQKIIIKSMAE
WYLNAENDQTRLSRILDIAQDLKALLLLLSTQQYNFMIDLACLASRREYLKLEKWMTDKI
REIGEPFVKSTLTFLKRKAPQVSGLVPPEPRDLPGGGKTGVLPTETIATILACLQACQNN
VSPETSDVIMQMVSNCSPLLNSVRPPQGVIQPQNALPALSPHIGPGLGPGLAPGINSPMD
PMPPLQAPIGTSATPTTPGAIQGFPPGGPLSGAFSNPPPAAPQFPLLSTVGLGSMNNPSH
GMDNSLRSNMRPGNMMTNPVGTGATGAALNQPPRTPGSVKPGCSDISNLWPELSQTFPPE
IDEEANRIFQKIYNQPQDQIKVDDVLMKLKKFKDSTVKKERDVFMCMLRNLFEEYKFYHQ
YPERELMITACLFGGIIEQGLVTYMALGIALRYILDALRKSPDSKTFMFGITALDKFKTR
LKEYPQYCQHLASIPHLSQFPERLIEYIQYGQQSMEPPSRPNISSAPVPAGPTTTVSGPA
ETGVVSVPKTATTTTTSVSKILPKSNPPSIANTTNIDTLLSAKDKRSELREEPPEAIQEK
VAFIFNNLSLSNMTQKGEELSEVITEEHIDWLAQYLVMKRASIEINFHQLYANLVDHLKI
QGLVEKVMLETYSNIEVLLSSDKSASNFSDRSLLKNLGHWLGLLTLAKNKPILQIDLDLK
SLLFEAFHKGQSELLYVVPFVAKVMEACLNSRVFKPPNPWTMAIINVLAELHQTPSLKLN
LKFEVEVLCKNLGLDINELDPPIFLKEIDRLRYIKEKLSVGKPKEESLLLAPVSEPPAAI
TTTVTTAAVTLAPTTTTTTAGSPSQMPQFNFHDLNTTSLNGLAPHIVINSQLALFQNHPQ
LRSCVRPAIDRAVSELVHPVVDRSIKIALTTCEQIIKKDFALDPEETRMRQAAHHMVRNL
TAGMAMITCREPLIPSISNNFKTSCLSAINGGTQQQKDMIEQASGVIAQENVELACCFIQ
KCAVEKAIPEMDRRLATEIELRKHARQENRRYCDPVVLTYQAERMPEQIRLRVGGAPTNQ
IAVYEEFARSIPGFLPTPEANLPSGFLDNPPQAFVLDDMSKIYEKCMSDIEAHLHALIQT
APHSQHLQVLHTLLEAVAMARNSREVVTALALLTKAVEGILEGYTPPATVDTPELAQRYR
DCHILVLKALQDQRAYGSQWTNKQITRVIFETTGDRKYNLDAIEQLLRSHLINLQTFDQY
LAGSMESGLNFNYVAFAMGVAKRFLVDDQQSNIVNEADLYQTLHMLSRILTQSANPPEGL
QQLIEMIRQNQDPAFLDKVPGGPTSMMHSGISQAREYDDPHGLREKTEYLLREWVQKHHS
PAGSRDNLRAFSAFVSQMHQQGILKTDDLITRFFRICIELCVDLCYRAQAEQAHNPTITR
AKCFHTLDAFVRLIALLVKHSGDVNNPVTKINLLNKVLGIVAGVLLQDHEARQTDFHQLA
YHRIFSMLLLELNAPEQILEAINFQIMTAFCNALHVLRPSKAPGFVYSWLELISHRIFIA
RMLAVLPQQKGWPMYAQVLIDLLKFLAPFLRNAELPKHTFLLYKGTLRVLLVLLHDFPEF
LCDYHYGFCDVIPPNCIQMRNLILSAFPRNMRMPDPFTPNLKVDMLPDITQPPRILTNFS
AMIQPTSFKKDLDSYIKTRGPVTFLSELRSHLQVSNEAGQRYHVSLMNALVLYVGSQAIA
YIHSKGGSPSMSNITHSSHMDIFQNLVADLDTEGRYIFLNAIANQLRYPNSHTHYFSCTL
LYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIRNHNYKFWNHEFIHCAPE
LERLFESVARSCIQPKQPSQQGRTSQEGGEAQELSA
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattccctttctctggccttgtcgcagatttccatcttagtggccaacctc
accaagaaaaactacaaacaaagcgttggggaagtcgcacggctggtgtctcagcacggg
cctgaggcagacaggcacctgttgcgctgtctcttctccgctgttgatttctcgagtgaa
agtaaaaccaacggaaaagacgcacaccaaacccagtatctcgttgatgaatgctcacag
ctggtggcaaaacctagtttcatcagtagcctgtgttttgctgttgacaacccacttagc
catcagaagactttaaagccatcacctcaacttcttcatcaaatcagtaaagttctgaaa
ctcaccaaagtcaaggaagtggtcttcggccttgctcttacccattctgccagtacagac
ctcaagaattttgcactgcagtacgttaagcaacgtttgcctgacttcctgaggctttac
attgacgcagaccaacatagtcgacccgaagctagtcttgccgatctctcggtggaaata
ttacacttgcttctgactcatcttctgtatcgatccaaagatcagctaggaatcccggcc
actcagaccgctgcattccttaaagctctgaagaaagagtttccagtagagcaagtgcct
gtggtattggtaccgttgctctactcagacagacaagatatcaccatggacagaatcaca
aatgacccttcaaacattccaaaaggagtgatggatgcttctcttgcagacatgctccaa
gagatggggtatgcctgctgtgctagtccagacgattgcaagaagacattgaagatggta
aatcccaacctcaatccaggggtagttgctaaggtcattggcatgatggccaggacacat
gatacccttacagatagccatcccttacagactcctggtggcaccatttggggtgatggt
agggaaaccagaagcgatgggtcagccaactcatggaatattgatgcctttgtggacgtc
ataaaagaggtagctcctcatatgaactttcatgtcgttgccatggagttagaccatcca
gctttgatcattaaggatggcaaggcattgcagatggtgaagaatgccattgttagagct
acacaaacagagtttcctgtcgagatattgttcaaagtgtggaacaacaaagatggacag
ctctcttggatacagcaggccctgaagttcccagaagtcttctgcttctccgactttcaa
agcagccgtaaagtcgtcaccgacatcctgaaatcccctccagaggatgagaacaagaag
atagcgacttggaaatcgttggaactcgtcgaagtccttctgaaattggcagagacagag
aaggctgatcaagttcaactccttttcacgtttccgattaaaaattgccccgatctgctg
cttttagctctcctacaagttcagtcctcgtggtctttcatgaagtcagagctgatccga
gccttgatgccgaccttcttgggtaatcatgccaactcagggattatattacactatgca
tggagtggacagggtcgatctccgaccattcaaaagatcataataaagtcgatggcggaa
tggtacctcaatgcagagaacgatcagaccaggctgtcacgtatcctggacatcgcccag
gacctcaaggcactcctgttgctactgagcacacaacaatacaacttcatgatcgatctg
gcatgccttgcttccagacgagagtacctgaaactagagaaatggatgacggacaagatc
agagaaattggagagccttttgtgaagagtacccttacctttcttaaaaggaaagctcct
caagtctctggtctggttcctccagagccaagagatttacccgggggtggaaagaccggt
gttcttccaacggaaacgatcgctacaatactggcttgtcttcaggcttgtcaaaacaac
gtctccccagaaaccagtgatgtcataatgcagatggtatctaactgttctcccctgttg
aacagtgtgaggccccctcagggggtcattcaaccccagaatgccctgccagctctgtca
ccccatattggtcctggattaggacccggtctagctccagggatcaactctccgatggat
cctatgccacccctccaagcgcctattggtaccagtgctactccaacaacaccaggggct
atacaaggctttcctccaggtggtcctttgagtggagccttcagtaaccctcctccagct
gcaccacagtttccgcttcttagcacggtcggtcttggaagcatgaacaacccctctcat
ggcatggataacagtctccgtagcaacatgaggcctggaaacatgatgaccaatcctgta
gggactggagccaccggtgctgcacttaaccagccaccaagaactcctggatcagtcaaa
ccaggttgttctgacatttcaaatctctggccagaactaagtcagaccttcccaccggaa
atagacgaagaagccaatagaatctttcagaagatttataatcagccgcaggaccaaatc
aaagtggatgatgttctcatgaagctcaagaaatttaaggactcaacagtcaagaaagag
cgggatgtgttcatgtgtatgctgaggaacttatttgaggaatacaagttctaccatcag
taccctgagagagagctgatgattacagcttgtctgtttggtggtatcatcgagcagggt
cttgtcacgtacatggccctcggcattgccttacgttacattctagatgcccttcgtaaa
tctcccgacagcaagaccttcatgtttggtatcaccgctctggacaagttcaagactcgt
ctgaaggagtaccctcagtactgccagcatctagcatcaattcctcatctctcacaattc
cctgaaagactgattgagtacattcagtatggtcagcagtccatggagccgccgtctcgt
ccaaatataagctcagctccagtaccagccggtccgacgactaccgtcagcgggccggca
gagacaggtgtggtatccgttcccaagacagccaccactactacaacatccgtcagcaag
atacttccaaagagtaacccgccctccatcgctaacaccaccaacatcgacactctgcta
agtgcaaaggacaagcgttcagaactccgtgaggaacctccagaagccatccaggagaaa
gtagccttcatcttcaacaacctatctctatctaacatgacacaaaagggagaagaattg
tcagaggttattacagaggagcatattgattggctagcacagtatcttgtaatgaagaga
gctagtatcgaaatcaacttccatcaactttatgccaatctggtggaccatctgaaaatc
caaggactcgtagagaaggtcatgttggaaacatacagtaacattgaggttctcctcagc
tccgacaaaagtgcctccaacttctcagatcgttctcttctgaagaatctgggacattgg
cttggactgttgacgcttgcaaagaacaaaccaattttgcaaatagatctggatctcaag
tctctcctcttcgaagccttccacaaaggccaatcagagctcctttacgtggttccattc
gtcgccaaggtgatggaggcgtgtctgaatagccgggtcttcaaacctccaaatccgtgg
actatggctatcatcaatgtcctggcagagttgcatcaaacacccagcttgaagctcaac
ctcaaatttgaggtggaagttctctgtaagaacttgggcctggatatcaatgaactggat
ccacctatattcctcaaagagattgaccgtttgcgctacattaaagagaagctgtccgta
ggtaagccaaaggaagaaagcttgctcctagcaccggtatctgaaccaccagctgcaatc
accaccacagtgaccacagcggcagtgaccctcgcccccaccacgacgaccacaactgcc
gggagcccctcgcagatgcctcagttcaacttccacgacctgaacacgacatcactaaac
ggtctggctccacacatagtcatcaattctcagctggctctctttcagaaccatcctcag
ttgcgcagctgcgtcaggcccgccattgacagggccgtctctgagctggtccaccccgtc
gtggatcgatccatcaagatagctctcactacttgtgaacagataattaagaaggacttt
gcattagatccggaagaaaccaggatgcgacaggcagcccaccacatggtcagaaactta
acagctggtatggccatgattacctgtagagaacctctgatcccaagtatcagcaacaac
tttaagacctcttgcctcagtgctatcaatggtggtacccagcagcagaaggacatgata
gagcaggccagtggagtcattgctcaagagaatgtggaactagcatgctgcttcatccag
aaatgtgctgtggaaaaagccattcctgagatggatagacgccttgccactgaaattgaa
ctcaggaaacacgcccgccaagaaaatcgccgttactgtgatcccgtggtactaacctat
caggcagaacgaatgccagaacagataagattaagggtcggtggcgcaccgactaaccag
atagccgtttacgaagagtttgctcggagcataccgggattcctccccaccccagaggcg
aatctgccgtcaggattcctggataacccgccgcaagcatttgtactggatgacatgtca
aagatttatgagaagtgcatgagcgatatcgaagctcaccttcatgccttgattcagacg
gctccacacagtcaacatctgcaggtactccacactctattagaggcggttgccatggcg
agaaactccagagaggtggtcacagctcttgccctccttaccaaggccgttgagggcatc
ttagaaggttacactccaccagcaaccgttgatactccagaattggcccagaggtacagg
gactgccacattttggttctgaaggccttacaggaccagagggcctatggctcacagtgg
accaacaaacagatcacaagagtcatttttgaaaccaccggagacagaaagtacaacctg
gatgccatcgagcagctgctacgcagtcacctgattaatctgcagacctttgaccaatat
ttggccgggtctatggagtccgggttgaatttcaactatgtggcatttgcgatgggtgtc
gccaagcgtttcctggtcgacgaccagcagagtaacatcgtgaatgaggctgacctatac
caaacccttcatatgctctccagaatcctcacccaatcagccaacccaccagaaggcctt
cagcagctaattgaaatgatcagacagaaccaagacccagccttcttggataaagtacct
ggaggtccaacctccatgatgcattctgggatatctcaggccagagagtacgatgatcct
cacggccttcgagagaagacagagtacctcttgagagagtgggttcagaagcaccactct
cctgccggtagccgtgacaaccttagggcattttctgcctttgtcagtcagatgcaccag
caaggcatcctgaagacagacgacctcatcacccggttcttccgtatctgcattgagctc
tgtgtggacctctgttacagggcccaggctgagcaggcccataaccctaccatcaccaga
gccaagtgctttcataccctggatgcctttgtaaggcttattgcacttttggtcaaacat
tccggcgatgtcaacaacccggtcaccaagatcaacctgttgaataaggtgttaggcatc
gttgccggtgtgcttcttcaggatcacgaggccagacagactgatttccaccagctggca
taccatcgtatcttcagcatgctgctactggaactcaacgcacctgaacagatacttgaa
gcaatcaacttccaaatcatgacagcattctgtaatgcgctccatgttttaaggccaagc
aaagctcctggatttgtttactcttggctggagttaatttcacacaggatcttcatagct
agaatgttagctgtgcttcctcaacaaaagggttggccgatgtacgcccaagttttgatt
gatctgctgaagtttttggcacctttcttgagaaatgctgaacttccaaagcacacgttc
ctgctgtacaagggaactcttagggtcttgttggtccttcttcatgatttcccagaattc
ctctgtgattatcactacggtttctgtgatgttattccaccgaactgtatccaaatgagg
aatctaatcttgagtgcgttcccacgtaacatgagaatgcccgaccctttcaccccaaac
cttaaggtagacatgctgccagatatcacccaacctccaagaatcctgacaaacttctca
gcaatgattcaaccgacatctttcaagaaggacttggattcatacatcaaaacccgtgga
ccagtgacattcctttccgagctgcgtagccatctccaagtgtcgaatgaagctggccaa
agatatcatgtatcgctaatgaacgcattggtgctctatgtgggctcacaggcgatagct
tacatccatagcaagggcggatctccctcaatgagtaacataactcattcatcccatatg
gacatcttccagaacttagtggctgacttagacactgaaggacgttacattttcttgaat
gccatcgccaatcagctccgttatccaaacagccacactcactacttcagttgtacgcta
ctctacttgttcgcagaggcgaacaccgaggccatccaggaacagattaccagggtactc
ttggagagattaatcgttaacagacctcacccctggggattgttaatcaccttcatcgag
ctcatccgtaatcataactacaagttttggaatcatgaattcatccattgtgcacctgaa
ctagagagactctttgaatcagttgctaggagctgtatccagccgaaacaaccaagccaa
cagggacggacctctcaagaagggggtgaagcccaagagttatcagcataa
DBGET
integrated database retrieval system
