Apostichopus japonicus (Japanese sea cucumber): 139977056
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Entry
139977056 CDS
T10891
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like
KO
K18735
protein SMG9
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139977056
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139977056
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
Dynamin_N
MMR_HSR1
AAA_18
NB-ARC
Motif
Other DBs
NCBI-GeneID:
139977056
NCBI-ProteinID:
XP_071842159
LinkDB
All DBs
Position
12:13078527..13106120
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AA seq
520 aa
AA seq
DB search
MASKPIGVGLGGPGSGSDRGGGRRRRKAPRGRTKPTEGTSRERDPTETFDRGSPAILNKP
PKILQKNQAVEKPKVLLDSPNPEEYRSKPPVDTPFKIKTRATDDTKTNEISTPESLMSQR
PSAPGTITIASNKLGPPLRVNVKEDIRAKNATPTHSPRPLAIEVPVHKRLSVPAEMTHSI
TLVDESGSWCENGIEMLLDLTDYLVVGVLGMQGSGKSTVMSFLAGNDISDNKSSYIFKPE
TRETILKASHQTLGVDFFVTKERVILLDTQPILSSSVLDDLLSHEKNLQPEYTSAENYAE
MQSLQLVSFLMTVCHVVLVVVDWFPDLSLMEFLKRAEMLKPPTPSPPPSQSQDVEASKDK
EDYSPCIAFVINKSTPSDFHPTVVNEAEKSIASVFKNSQLKFQGCSSLARANIMPSLSSA
TLPLDVNLFLIPHFHDNETDITAIYNNGQSILYSLLPNKVKGHPRTETLVRCFRNQIFGA
ARYPLTHTSLTEKNWFHYAARTWETMRKSGLMSDFNRLLT
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaagcccatcggagttgggttaggtggacccggctctgggtcagatagggga
ggcggacggagaagaaggaaggctccaagaggaagaacaaagcctacagagggcacatct
cgtgagcgggatccaacagaaacgtttgatcgaggttctcctgctattttaaataaacca
cccaaaatacttcagaaaaatcaagctgtagagaagcccaaagtcctccttgattcccct
aacccagaggaatatcgatccaagcctcctgtggacacacctttcaagatcaaaaccaga
gctaccgatgatacgaagacaaatgagatttctacgccggagagcttgatgtcgcaacgt
ccttctgctcctggtaccatcaccatagctagcaacaagctcggtccacctctcagggtg
aatgtgaaagaagacataagagccaagaacgccactccaactcactcgccacgcccatta
gcaatcgaagttcctgtccataagaggctgtctgttcccgcagagatgacacattccatt
acgctcgtagacgaaagcggttcctggtgtgaaaacggtattgagatgttactggacctt
accgactacttggttgttggagttcttggcatgcagggaagtggaaaatcaaccgtgatg
tcatttcttgctggaaatgacatcagtgacaacaaaagctcgtacatcttcaagccggaa
acacgtgagaccatcctcaaagccagtcaccagactcttggggttgacttttttgtgacc
aaagagagggtcattcttctggacactcagccaatactcagctcgtcggtccttgatgat
ctactgtcgcacgaaaagaaccttcaaccagagtacacatctgctgagaattacgctgaa
atgcagtctctccagctggtgtccttcttgatgaccgtgtgtcatgtggtgttggtcgtc
gttgattggtttcccgatctgagtctgatggagttcttgaagagggcggaaatgctgaaa
ccccccaccccatctccacccccaagtcagtcccaggacgttgaagccagtaaagataaa
gaagattattcaccctgtatagcttttgtgatcaataaatccactccatctgattttcac
ccaactgtcgtgaatgaagcggaaaagtccatcgcctcagtcttcaagaacagtcagctg
aagttccaaggatgttcctccttagcgagggccaacattatgcccagcctctcatcagca
actctgcctctcgacgtcaacctcttcttgataccacatttccatgacaacgaaactgat
attactgctatatacaataatggtcagtccattttgtacagccttctgcctaataaggtc
aaaggtcacccacggacggaaaccctggtcaggtgtttcagaaaccagatctttggagcg
gcgcgttatccactgactcacacatctttgaccgagaaaaactggtttcattatgcagcc
agaacctgggagacaatgagaaagtcgggcctgatgtcggatttcaatcgtttgctgacc
tga
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