Apostichopus japonicus (Japanese sea cucumber): 139978543
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Entry
139978543 CDS
T10891
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139978543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ajj03019
]
139978543
Messenger RNA biogenesis [BR:
ajj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139978543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_16
TPR_1
TPR_19
TPR_17
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_11
ANAPC3
HrpB1_HrpK
ARM_TT21_5th
TPR_20
ARM_TT21_C
TPR_30
Motif
Other DBs
NCBI-GeneID:
139978543
NCBI-ProteinID:
XP_071844941
LinkDB
All DBs
Position
13:19760533..19800941
Genome browser
AA seq
1501 aa
AA seq
DB search
MATGKSTLSKEAKTALKAAKEAIKNKEYKEAIKHCKIVFKEDKTNYNALVFVGVAASEMG
QLEQGVAAYKKAIDVEPEQELAWQGLCSVYEKSQTPEHMEALLETYPKLMKIFAGKDNKK
WEKVARKRVQLLQDNGRKEEACTELHKMITSGHCHDNRVTLELQMQLVDMAACETSQQES
SDIVEDAFKAILGSEDAKKDEKQKYHRSYIKFILNKGFDVVKEECANMHREHPSDPYPMA
ILVEFNLQKPLDSISDDVFINLENLRALDPDDPLIDLADGQTKLFRKNYAEAKTSLMKSV
KKNQSNPFAWLFLAHCHVKLRSPKSVHVTIEKGMQELKKYSFPGVDKISVEEQFLLLETA
SLLDCEASASAAQALQITERLVTREGSSAEVKVAHLKALVSTGQLDQAKELLLSVMTSQE
IPNKLKLELKIIEGQIKFYQHHLEDALKCFQEVTASEPENSVSLYWQGRVYWQQGDETRR
DRSKCLDALMKAAKLDPNHSSTLLYLGYFHQHVVGDLNKAKRCYQQSYILNPASEEAGSM
LGDAMIALGEQDKAFDLYNSVTSKSAPGTAKWAWLRLGLYHFKFGDPTDAINSFQSALRA
DPSDKQCWECLGDAYMKRGSYTAAMKAFTKAIELGGSTLYCRYQIAAIKQTLGLYSEAVL
DYDEVLKETKNYVPALKGQGETFLRLAQMSLVDFFNGRAVDYVEKAIQTVARASVLRPDL
CCLWSILGSACSLLVPVDRDLIRVNVPSSLLPSSKVTSGLNETRQLGKSELLALGARCYT
RALQLQSNSGNLWCDLGVNYFHQSEISKDNESMMATKAFQCIHKALSLDGTNHKYWTILG
VICNSNGIKRPSISQHCFIKSIELERNNVVAWTNLGVLYLIQGDIKLANKAFNFAQSLEP
SYVQCWIGQAIIAETVSSDETMDLFRHTTELATHNEGSIGYAHWVCKTLLDPNLDQDSSL
YRYNILQMSAVTQALVVMEKHNDRCHTNPSALMINGLLLERQKLYRSAVNIYRRCVEELE
KRSDDSERLLAARVNFARCLSACGMTDEALKQYEAVGSSADETSRLGYALCLYKAGNYER
CFQVYQEALEACESGDSEVHILAALGMVAYKCDNVTQAKTMLFKSSQKIPPSGPGLKALC
AIGLLSGDATLSHAVITELEKQSTDVSMVKGLTILKSALLIMEGQKDKALATVVSSIHRY
PWLPDIWQTAAEVIIHSGSCQAEIAALAMLKAHHFQKSPSGSSLQIRALCNLAAGQFRKT
SSGAESCLRSVQRAVFLFPDDVGNWSLLLASLISEALVYHTEQKKAVIDLLINRVHHKVK
LMKNSPMEHWSVVLSLWWSLQQCQYDRCMELANTYTEWYDYPKPVVSEIQMISALAETLK
LNRRFWELENLSNAKQLILEELQSCASLQLLGSLYERGRCFAAAEHCYRQALVRAEGNQA
LVLMKMCKFALDAAASTLPDNKEWISLAKEAFQEVYKTKLQNPVCVGLLQGTMKLLEGNE
R
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atggcaactggcaagtcaaccctgagtaaggaagctaagactgctctgaaagctgcaaaa
gaagccatcaagaacaaggaatacaaagaagctatcaaacactgcaagatcgtattcaag
gaagacaagactaattacaatgctttggtctttgtcggtgtcgctgcgtccgagatgggt
cagttagagcaaggagtagctgcctacaagaaagcgatcgatgtagaacctgagcaggaa
cttgcttggcagggcctctgcagtgtttacgaaaaaagtcagacccctgaacacatggaa
gctctgttagagacttatccaaaacttatgaaaatatttgctggaaaagataacaagaaa
tgggaaaaggttgccagaaaaagggttcaacttttacaggataatggaaggaaagaagaa
gcttgcacagaacttcataagatgatcacatcaggtcattgccatgacaacagggtcact
cttgaactccagatgcaacttgtggacatggcagcatgcgagacctctcagcaagaatct
tctgacatcgtggaagatgccttcaaagccatcttaggatctgaagatgcaaagaaggat
gaaaagcaaaaataccacagaagttatatcaagttcattttgaataaaggatttgatgtg
gttaaggaggagtgtgcaaacatgcacagagaacatccatctgatccctaccctatggcc
atcctggtagaattcaaccttcagaaaccattagattccatatctgacgatgtcttcatc
aatttggagaacctgagggctttggatcctgacgatccattgatcgatctcgccgatggc
caaacgaagctcttcaggaaaaattatgcagaggctaagacgtcactgatgaagagtgtg
aagaagaaccagtctaatccatttgcctggctctttcttgctcattgtcatgtcaagctg
agaagtcctaaatcagtgcacgtcaccatcgaaaagggtatgcaagaattgaaaaagtat
tcatttccgggggtagacaagatatcagtggaggaacagtttttactgttggagacagct
tctcttctagactgtgaagcatccgcaagcgcggctcaggctctgcaaattacagagcga
ctggtaaccagagagggttcaagcgccgaggttaaagtggcccacctgaaagctctcgtg
agcacaggtcagcttgaccaagcaaaagagttactgttatcggtgatgactagccaggaa
ataccaaacaaacttaaattagagctcaagataatagagggccagattaaattctaccaa
catcatctggaagatgccttaaagtgtttccaagaggtcacagcctctgaacccgagaac
tcagtttccttatactggcagggaagagtttactggcaacaaggcgatgaaacacgcaga
gacagatcaaaatgtttagatgctcttatgaaggctgccaagcttgaccctaatcattca
agtactttgctttaccttggatactttcaccagcatgtggtaggagacttgaataaggcc
aagagatgttaccaacaatcctacatcttaaacccagcaagtgaagaggcaggaagcatg
ctaggagatgctatgatagctttgggagaacaggacaaagcatttgatctctacaactct
gttaccagcaaatcagctccaggcactgctaagtgggcatggcttagacttggactctac
cacttcaagtttggtgaccctacagatgcaataaacagttttcagagtgcattgagggca
gatccatcagataagcagtgctgggaatgtttaggagacgcatacatgaagcgagggagc
tatacagccgcaatgaaagccttcacgaaagcaattgagctaggaggctcaacattatac
tgcagatatcaaattgcagccattaagcagacccttggtttgtactccgaggctgtgctg
gattatgatgaagtgctaaaagaaaccaagaactacgttccagctttaaaaggtcaagga
gaaacctttttgcgactggctcagatgtcactagtagatttcttcaatggcagagcagtt
gactatgttgagaaggctatacagacagttgccagggcctctgttttacgacctgatctt
tgctgtttgtggagtattctcggctcagcatgttctctcctcgtcccagtcgatagagat
cttatcagagttaatgttccatcttccttgctgccttcctctaaagttacaagtggttta
aacgagacaagacaactgggcaagtctgaacttctggcactaggagcacgatgctacacc
agagcgttacagttgcagtcaaatagcgggaacttgtggtgcgatctcggagtcaattat
ttccaccaatcagagatcagcaaagataatgaatcaatgatggcaaccaaagcttttcag
tgcattcataaagctcttagtctggatggaacaaaccataagtattggactattttaggt
gttatttgcaattctaatggtatcaaaagaccgtccatctcacagcattgtttcatcaag
tctatagagctggaacggaataatgtggtggcctggaccaaccttggagtcttgtattta
attcagggagacatcaaactggctaacaaagcgttcaattttgcccagagtttggaaccg
agctacgtccaatgttggataggacaggcaatcattgctgaaaccgttagcagtgatgag
acaatggatttattccgtcataccaccgaactagcaactcacaacgagggcagtatcggg
tatgcgcactgggtttgcaagacacttctagatccaaacctggaccaagattcatcactc
tatcgctacaatatactacagatgagtgcagtaactcaggctctggtcgtcatggaaaaa
cacaatgatcgatgccacactaacccttctgctctgatgattaatggactgctactggag
agacaaaaactctatagatctgctgttaacatttacagacgctgtgtcgaggagcttgag
aaacgcagcgatgactcagaacggttacttgctgccagagtaaactttgccagatgccta
agtgcctgtgggatgacagacgaggccttaaaacagtatgaggctgtaggctcatcagct
gatgaaaccagccgtctcgggtatgcattatgcctttacaaggcaggtaactatgagaga
tgctttcaagtatatcaggaagcgctggaggcttgtgaaagtggcgactccgaggttcat
attcttgctgctttgggtatggtagcttataagtgcgataatgttacacaagcaaagacc
atgcttttcaagagttcacagaagataccaccttcaggaccgggcttgaaggctctctgt
gcaatcggactgctatccggtgatgcaactctctctcacgctgttattacagaacttgag
aaacaatccacagatgtttctatggtgaagggattgaccatactgaagagtgccttacta
attatggagggtcaaaaggataaggccttagctaccgtcgtctcgtccattcacaggtat
ccatggttaccagatatatggcagacagcagcagaagtgattattcacagtggatcttgt
caagcagagatcgctgcattggctatgctgaaagctcatcatttccagaaatctccttcg
ggatcaagcttacagatccgagctctgtgcaaccttgctgccggacaattcaggaaaaca
tcatcgggagctgaatcttgcctcagatcagttcagagggcagtctttctatttccagat
gacgttggtaattggagtttattactggctagtctcatcagtgaagctctggtataccac
acagagcagaagaaggccgttattgacttgctcataaaccgtgttcatcacaaagtgaaa
ctgatgaagaattctccgatggaacattggtcagtagtgttaagcttgtggtggtctcta
cagcaatgccagtacgatagatgtatggaattggcaaacacgtacacagagtggtatgac
tatcccaaacctgtggtgtcggagattcagatgatatcagccttagcagagaccctaaaa
ctgaatcgtcgcttttgggaactggagaatctgtcgaatgccaagcagcttattttggaa
gaactgcagtcgtgtgcctccttacaactgttggggtctctttacgaacgtggtagatgt
tttgccgctgcagagcattgctacaggcaagccttggtgagggccgagggtaaccaggct
ctcgtgctcatgaagatgtgtaaatttgcattagacgctgcagcatcgacattgcctgat
aataaagaatggatttcattggccaaagaagcatttcaagaagtttacaagaccaaattg
caaaatccagtctgtgttggtttactgcagggaactatgaagttactggaaggaaatgaa
agataa
DBGET
integrated database retrieval system
