Acinetobacter johnsonii: RZ95_03540
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Entry
RZ95_03540 CDS
T04178
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ajo
Acinetobacter johnsonii
Pathway
ajo03030
DNA replication
ajo03410
Base excision repair
ajo03420
Nucleotide excision repair
ajo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RZ95_03540 (ligA)
03410 Base excision repair
RZ95_03540 (ligA)
03420 Nucleotide excision repair
RZ95_03540 (ligA)
03430 Mismatch repair
RZ95_03540 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajo03032
]
RZ95_03540 (ligA)
03400 DNA repair and recombination proteins [BR:
ajo03400
]
RZ95_03540 (ligA)
Enzymes [BR:
ajo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RZ95_03540 (ligA)
DNA replication proteins [BR:
ajo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RZ95_03540 (ligA)
DNA repair and recombination proteins [BR:
ajo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RZ95_03540 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RZ95_03540 (ligA)
MMR (mismatch excision repair)
DNA ligase
RZ95_03540 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RZ95_03540 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_lig_T4_1
HHH
GFRP
Thiamine_BP
Motif
Other DBs
NCBI-ProteinID:
ALV72061
UniProt:
A0A0U3SZX9
LinkDB
All DBs
Position
706428..708467
Genome browser
AA seq
679 aa
AA seq
DB search
MTQTSTVVAQMRQLIQILAQHNHAYYVMDQPTILDSEYDQLFHQLKALEEQYPECIQPDS
PINKVGAKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAEERLPNQTIQYDVELKFDG
LAISLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLTTNQGEVPTLLEVRGEVLM
PKAGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQ
STMSESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQ
QQQLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAIEVELPSQCPVCESPVV
MPEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYH
LHEHREKLLTIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
LDALRVADIEALKKTPDVGDITAEWIVDFFQAPHNLEVLDRLLAAGIHWDAPVAPSRQPL
NGESWVVTGTLSTMGRDEATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIA
VINEAEFIQLMKDYGQLEA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaacttcgactgtcgttgcgcaaatgcgtcaactgatccaaattttggcacag
cataatcatgcttattatgtgatggatcagccgactattttagacagtgaatatgatcag
ctttttcatcagttgaaagctttagaagaacaataccctgagtgtattcagccagatagc
ccgatcaataaagtcggtgctaaacctttggcgaagtttacgagcgtgacccatgtggta
ccgatgctgtctttaggcaatgtgtttaatcaagaagaactttttgcctttgcacgccgt
gcagaagaacgtttgccgaatcaaacgattcaatatgatgtcgaactgaagtttgatggt
cttgcgatttcactgtggtatgaacagggtgtgctggttcgtggagtgacgcgtggtgat
ggtgagacaggggaagacattacccaaaacgtcaaaaccattcgtaacttgccgaaggtg
ttgaccacaaatcagggcgaagtacctacgctactggaagttcgtggcgaagttttgatg
cctaaagcaggatttgaaaagctcaatgcagaaaatgaagccaaaggtgagaagactttt
gccaacccacgtaatgccgcggctggcagtctacgtcagttagacccgaatattgcggct
tcgcgtccacttgcattttatgcttatggtattgcgcagtgtgaaccaaatcatggtcaa
agcaccatgtcggaaagtctagagtggttgcaacagtttggttttgcagttggtgagcgt
cattttgtctgcgatagtattcaagaagtccaagctgtttatgagcaaatcaatgcggaa
cgaccacaattgagtgtggaaattgacggcatggtgattaaggtcaacagcctcaaacaa
cagcaacagctcggctttttaagccgagaaccgcgttgggcaacggcttataaattccct
gcggtggctgcgctcaccacggttgaaaatattgactggcaagtgggacgtacaggtaca
ttgacccctgtagcgcggttgaatcctgtcgctgtcggcggcgtgaccgtttcaaatgtg
accttgcataatattggagaaatccaccgcctagatgtgcgaattggcgatactgtcagt
gtttaccgtagtggtgatgtgattcccaaagtggaaaaagtatggcctgagttccgtcct
gtcgatgccattgaagttgaactcccgagccaatgtcccgtgtgtgaatcgccagtggtg
atgcccgaaggtgaagctttagcacgttgctcaggtggtttgtattgtgccgcacagcgt
attgaggcaattcgccacttcgtgtcacgtaaagctcttgatattgaaggtttgggagat
cgttgggtcgaatcactgttacatcttgatctgcttaaagatgtggctgatatttatcac
ctacacgagcaccgagaaaagctattaaccattgaaaaaatgggtgagaagtccgttcag
aacttgattgattcgattgaaaatagcaagaaaaccactttggctgcatttatttatgca
ctggggattcgtggggtgggtgaaaccacagcacgtatgttggccaatactttccaaact
ttagatgcgctacgtgtcgcagacattgaagctttaaagaaaaccccagatgtaggggat
atcacggcggagtggattgtcgactttttccaagcgccgcataatcttgaagttttagac
cgattattggcggcaggtattcactgggacgcgcctgtggcaccaagtcgccagcctcta
aatggagaaagttgggtcgtgacgggtacactcagtacgatggggcgtgatgaagcaaca
cagctcctacaagcactgggcgcacgtgtcagtggtagtgtgtcgagtaagaccaagtgt
gttgttgcaggtgaaaaagcaggttcaaagctggataaagcagagaagcttgggattgct
gtgattaatgaagctgagtttattcaactgatgaaagattatggccagttagaggcttag
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integrated database retrieval system
