Amphritea japonica: AMJAP_3206
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Entry
AMJAP_3206 CDS
T06992
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ajp
Amphritea japonica
Pathway
ajp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ajp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMJAP_3206 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajp03021
]
AMJAP_3206 (rpoB)
03400 DNA repair and recombination proteins [BR:
ajp03400
]
AMJAP_3206 (rpoB)
Enzymes [BR:
ajp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMJAP_3206 (rpoB)
Transcription machinery [BR:
ajp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMJAP_3206 (rpoB)
DNA repair and recombination proteins [BR:
ajp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMJAP_3206 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
BBB27791
UniProt:
A0A7R6PGF2
LinkDB
All DBs
Position
complement(3638903..3643003)
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPEAMDVPYLLAIQLDSYLKFLQQDADSAERKDVGLHAAFSSV
FPIVSYSGNAALEYVGYRLGEPVFDVKECQMRGITYAAPLRVKVRLVIYDRDSSNKAIKD
IKEQEVYMGEMPLMTDNGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDSLFVRIDRRRKLPATILLRALGYTTEEILDTFFDNTEWSLTADK
VLMTLVPSRLRGETATFDIKDGSGNIVVESGRRITPRHIRQLEKEKLQQLDVPSEYLIGN
VIAKDIIDPATGEVLCEGNSEITEELLEQMRGAGVAGLETLYTNELDCGPFISDTLRIDT
TRSQLEALVEIYRMMRPGEPPTKESAENLFENLFFSEERYDLSAVGRMKFNRRLTRADET
GSGILDKDDILAVMKTLIDIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDNLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNDYGFLESPYRKVV
DGKVTDEVEYLSAIEEGRHVIAQASAGMDDSNNLTDELVAVRHQNEFTVMPPEKVTYMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERYVARDSGVC
VTAERGGVIESVDAARIVVRVSDEETLAGEAGVDIYNLTKYTRSNQNTCINQRSIVRQGE
TVQRGDIMADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGSEEITSDIPNVGESALGKLDEAGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKTGTIGKVIDVQVFTRDGVPKDERAVSIEESELKR
IRKDLNEELRIVDQATFERLERALCGLKAEGGANFKKGEEITSEALAELKKSDWFKIRVA
DEATQEMLEKAQEQLEERRVELDAKFEDKKNKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDIVLNPLGVPSRMNVGQVLETHMGMAAKG
LGVKINAMLQAERDRLETVKELREFLDRIYNSELGGYKSGRHEDISSFSDDEVLELAKNL
KGGVPLATAVFDGAKEVEVKELLRMADLSDTGQFTLFDGRSGDQFSRPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESD
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgaaaagaaacgcatccgtaaagacttcggaaagctgccggaa
gcgatggatgtgccatatctgttggcaatccagttggattcttatttgaaattcctgcaa
caggatgctgactctgcagagcgcaaagatgtcggactgcatgcggctttcagttccgta
tttccgattgtttcctattccggaaacgctgcattggaatatgtaggttaccgtctgggc
gagcctgtttttgacgttaaagaatgccagatgcgcggcattacatatgctgctccacta
cgcgtaaaagtacgcctagtaatctacgatcgtgattcatcgaataaagcgatcaaagat
attaaagaacaagaagtatacatgggcgaaatgccgctgatgaccgacaacggtacattc
gttgttaacggtactgagcgagtaatcgtatctcagctgcatcgttcgccaggtgtattc
ttcgaccatgacaagggcaaaactcactcttctggtaagttgttgtattctgctcgtgtt
attccttaccgtggttcttggttggacttcgagtttgatcctaaagatagcctgtttgtt
cgtatcgaccgtcgtcgtaaactgccggcaactattctgctgcgcgcgctgggctatacc
actgaagagatcctcgataccttctttgataatacagagtggtctctgactgccgataaa
gtgttgatgacactggtgccatcacgtttgcgtggtgagactgcaacatttgatatcaaa
gatggcagcggtaacattgttgttgaatctgggcgccgtattacgccgcgccatattcgt
cagctagagaaagaaaaattacagcagctggatgtcccatctgaatacctgatcggtaat
gtcatcgcgaaagatattattgatcctgcgactggcgaagtgctgtgtgaaggcaacagt
gagatcactgaagagttgctggaacagatgcgcggtgctggtgttgctggccttgaaacg
ctttacaccaatgagttggattgtggtccgtttatctctgatactctgcgtatcgatact
acccgcagccaactggaagcgctggtagagatctaccgtatgatgcgtcctggtgagcca
ccaaccaaagaatctgctgagaacctgttcgaaaacctgttcttcagtgaagagcgttat
gacctgtcagcggttggtcggatgaagttcaaccgtcgtttgacccgcgctgatgaaacc
ggctcaggtattctcgataaagacgatattctggcggtgatgaaaaccctgatcgacatt
cgtaacggtaaaggcgttgtggatgatattgatcacctgggtaaccgtcgtatccgttct
gttggtgagatggcagagaatcagttccgtgtcggactggtgcgtgttgagcgtgctgtt
cgtgagcgtctgagcatggctgaatctgataacctgatgcctcaggatctgattaatgct
aagccggtcgctgctgcagttaaggagttcttcggatcttctcagctgtctcagtttatg
gatcagaacaacccgttgtcagaagttacccacaagcgccgtgtatcagcgttagggcct
ggcggtctgacccgtgaacgagctggttttgaggttcgtgacgtacacccgacccactat
ggtcgtgtatgcccaatcgagacacctgaaggaccaaacatcggtctgatcaactcgctg
gcgacttatgcccgcactaacgattacggcttcctggaaagtccgtaccggaaagtggtt
gatggtaaagtaacggatgaagttgaatacttgtctgcgattgaagaaggtcgacatgtt
atcgcccaggcatctgccggaatggacgatagcaacaatctgaccgatgaattggttgcc
gttcgtcaccaaaatgaatttaccgtaatgcctccggaaaaagtaacctacatggatgta
tctccacgtcaggttgtatccgtagcagcggcattgattccattcctggagcacgatgat
gctaaccgggcattgatgggatcgaacatgcagcgtcaggctgtaccaacactgcgtgct
gataagccgttagtaggtactggcatggagcgttatgtagcccgtgattccggtgtatgt
gtgacggctgagcgtggcggtgttatcgagtctgttgatgcggcgcgtatcgtcgtccgc
gtgagcgacgaagaaacactggcgggtgaagcaggtgtagatatctacaacctgactaag
tacacccgttcaaaccagaatacctgtatcaaccagcgttctatcgtccgtcagggcgag
actgtgcagcgcggtgatatcatggctgacggtccttccgttgacttgggtgagctggct
ctggggcagaatatgcgtatcgcatttatgccttggaatggttacaactttgaggattcc
atcctgatctctgagcgtgttgttcaggaagatcgttttaccactatccacattcaggag
cttacctgtgtggcgcgtgatactaagctgggttcagaagagattacatccgatattcca
aatgttggtgagtctgcactgggtaagctggatgaagccggtattgtacacatcggtgct
gaagtaggcccgggcgatattctggttggtaaagtgacgcctaaaggtgaaactcaactg
acgccggaagagaagcttctgcgtgcaatcttcggtgagaaagcctccgacgtgaaggat
acttcactgcgcgtaaagactggtactatcggtaaggttatcgatgtacaggtatttacc
cgtgacggcgtgcctaaagatgagcgtgctgtatcgattgaagaatctgaactgaaacgc
attcgtaaagatcttaatgaagagttacgcattgttgatcaggcaacctttgagcgtctt
gagcgtgcactttgcggtctgaaagcggaaggtggtgcaaacttcaagaagggtgaggag
atcacctctgaagctctggctgaactgaagaagtctgactggttcaagatccgtgttgct
gatgaagcaactcaggaaatgctggagaaggctcaggagcagctggaagagcgccgcgtt
gagctggatgcgaagtttgaagataagaaaaacaagctgcagacaggtgatgacctggcg
ccaggcgtactgaaaattgtcaaggtttacgttgctactaagcgtcgcgtacagccaggt
gacaagatggcaggacgtcacggtaacaagggtgttatctcggttatcatgcctgttgaa
gatatgccatacgatgagaacggtgagccggtcgatatcgtattgaacccgctgggtgta
ccgtctcgtatgaacgtaggacaggtacttgagacccacatgggtatggcagctaaaggt
ctgggtgtgaagattaatgcgatgctacaagcagagcgtgatcgtctcgagaccgttaaa
gagttacgtgaattccttgaccgtatctacaacagcgagctgggtggatacaagtcgggc
cgtcatgaagatataagcagctttagcgacgacgaagtactggaactggcgaaaaacctg
aaaggcggtgttccgctggcaacggctgtattcgacggtgcgaaagaagttgaagttaaa
gagctgctgcgcatggcagacctcagcgatactggacagttcacactgtttgatggtcgt
agtggagatcagtttagccgtccggtaaccgttggttacatgtacatgctgaaattgaac
cacttggttgatgacaagatgcacgcgcgttctaccggttcttatagcctggttactcag
cagccgctgggtggtaaggcgcagttcggtggtcagcgattcggtgagatggaggtatgg
gcacttgaagcttacggtgctgcctacaccctgcaggagatgctgacggttaagtctgat
gatgtgaatggccgtaccaagatgtataagaacatcgtggatggtgatcacagaatggag
ccgggcatgccagaatcgttcaacgtgttggtgaaagagatccgctcgctgggtatcgac
atcgagctggaatccgactaa
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integrated database retrieval system
