Acidovorax sp. JS42: Ajs_0406
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Entry
Ajs_0406 CDS
T00455
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Ajs_0406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ajs03021
]
Ajs_0406
03400 DNA repair and recombination proteins [BR:
ajs03400
]
Ajs_0406
Enzymes [BR:
ajs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Ajs_0406
Transcription machinery [BR:
ajs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Ajs_0406
DNA repair and recombination proteins [BR:
ajs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Ajs_0406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
ABM40658
UniProt:
A1W333
LinkDB
All DBs
Position
412621..413613
Genome browser
AA seq
330 aa
AA seq
DB search
MQTNLLKPKAINVEQLGPNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEI
VNPEHVIATLSAGGKLDMQIKVEKGRGYVPGNLRRYADEATKSIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLVVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDA
PASSRGAATFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKS
LNEIKEVLASRGLTLGMKLENWPPAGLDKR
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaatttgctgaaacccaaggcaatcaatgtcgagcaacttggccccaaccgt
gccaaggtggcgttggagccttttgagcgcggttacgggcacacgctgggcaatgccatt
cgccgtgtactgctctcttccatggtgggttacgcagcaacggaggtgacgattgccggt
gtcttgcacgaatactcgtccattgacggcgttcaggaggatgtggtcaacatcctgctg
aacctcaagggggtggtgttcaagctgcacaaccgtgacgaagtcacgctgagcctccgc
aaggatggcgaaggcgtcgtcacagcgcgcgacatccagacgccgcacgacgttgaaatc
gtgaaccccgagcacgtcattgccacgctgtctgcgggcggcaagctggacatgcagatc
aaggtggagaagggccgcggctacgtgcccggcaacctgcgccgctacgcggacgaggcg
acgaagtccattggccgtatcgtgctggatgcttccttctcgccggtgaaacgcgtgagc
tataccgtcgagagcgcgcgtgtggaacagcgcacggacctggacaagctcgtcgtcgag
atcgaaaccaacggcgctattactgccgaggacgcggtccgcgcttccgccaagattctg
gtggaacaactggcagtattcgcgcagctggaaggcggtgagttggcagctttcgatgcg
ccggcaagctctcgcggcgctgcgaccttcgatccgatcctgctgcgtcctgtggacgaa
ctggaactcaccgtccgctctgccaactgcctcaaggcagagaacatctattacatcggt
gatctgattcagcgaaccgagaatgaactgctgaagacgccgaacctgggtcgcaagtcg
ctcaacgagatcaaggaagtgctcgcttcgcgcggcctgaccctcggtatgaagctcgag
aactggcctccggcagggctagacaagcgttaa
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