Acanthopagrus latus (yellowfin seabream): 119023834
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Entry
119023834 CDS
T08233
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119023834 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119023834 (cnot1)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119023834 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119023834 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
119023834
NCBI-ProteinID:
XP_036961935
LinkDB
All DBs
Position
8:24386018..24410523
Genome browser
AA seq
2396 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADFPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFGFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSSVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDPLSGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSTPNPSTPFGGIGSLSSQLPGMD
SVAGPLGSGIGSGIGSGLGMQTVNTDPFGTRKMSTPGLNPPTFQQSKMKASDLSQVWPEA
NQNFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAHVQAQAQSQQPGGPKAPQPGQPSTLVTTTTTTTTAAKTTTITRPTTSFKKDVPPS
INTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPW
VSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDR
SLLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRS
MVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKL
KSLEEQLSAPKKEAKPPEEMLPVSTAGDFVPFAAPPSTPAATTTTCTTTGPPTPQFSYHD
INVYALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCE
QIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPT
PQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC
DPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQ
QAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALG
LLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDE
YKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVT
EADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQAS
EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFR
LCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC
NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR
NVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM
RLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNL
QVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDT
EGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaattaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgcgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttacgccattgacaatcccctgcac
taccagaagagtttgaagccatcggcccacttattcactcaactgagtaaagttctcaaa
ctcagcaaggttcaagaggtgatatttggccttgctttgctcaactccagcaacacagac
cttcgtggttttgctgcgcagtttatcaagcagaaacttccagacctcctgcggtcctac
gttgacgcagatcttggtggaaaccaggaaggtggcttccaagacattgccatagaggtc
ttgcacctactgctctcccatctactgtttggccagaagggagccagtggggtagggcaa
gaacagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctcttgcagaattcatgcaa
gaagttggctatggcttctgtgctagtctggacgagtgcagaaacataatcctccagtat
ggggtgagagaggtgacggccagccaggtagccagggtcctaggcatgatggcacgtacc
cactctggactaactgatggcattccactacagtccatctctgctccaggaagtggaatc
tggagtgatggtaaggataagaacgatggctcgcaggcacacacgtggaatgttgaggtt
ctcatcgatgttgtgaaagaagtgaatcccaacttaaacttcaaagaggtgacatacgag
ctggaccacccaggcttcataatccgggacagtaaaggcttgcatatagtggtgtatggc
atccagaggggtttgggcatggaggtcttcccagttgatctcatttatcggccatggaaa
catgctgagggacagttgtcattcattcagcactccctgatgagcccagaagtgttttgc
tttgctgacttcccttgccacaccgtggccattgacatccttaaggccccaccagaagat
gacaacagggagattgccacctggaaaagtctggacctggtggaaagcttgctcaggctg
tctgaggtgggtcagtatgagcaggtgaagcagctgtttggtttcccaatcaaacactgc
ccagacatgttggtgctggcattgctgcagatctccacctcctggcacacactgcgccac
gagctcatctctaccctgatgcccatctttctgggcaaccaccctaactcagccatcatc
ctgcactacgcctggcatggacagggacagtctccctcgatccgtcagttgataatgcat
tcaatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgttgctgaatggtactccatttgcc
tttgttattgaccttgctgctcttgcctctcgccgtgaatacctcaaacttgataaatgg
ttgactgacaaaatcagagagcatggggaaccttttatccaggcgtgtgtgacgttcctg
aagaggcgctgtccatccattatggggggcctggctccagacaaggaccagcccaaaagt
gcacagcttcccccagagaccttggccaccatgctggcctgcctgcagtcctgtgctggg
agtgtgtcacaggagctgtcagagaccatcctaaccatggttgccaactgcagcagtgta
atgaataaagcccggcagccaccaccaggggtaatgccaaagggacgtgcccccagcacc
agcagcctggatgccatctctcctgtacagatggaccctctatcaggcatgggatctttg
aacctggggggcacagccacttcccacactcaaagcatgcagggtttcccaacctcactg
agctcagctttcagtaatccccaatctccagcaaaagctttcccaccactctcaacccct
aaccctagcacaccatttgggggcattggtagcctgtcctcgcagctccctggcatggac
tctgttgcaggtcccttgggctctggcatcggctcaggtattggctctggtcttggaatg
caaacagtcaacacagacccttttggcaccaggaagatgagcacaccaggcctgaaccca
cctacctttcagcagagtaagatgaaggcctctgatctttctcaggtgtggcccgaggca
aaccagaactttagcaaggagatagatgatgaggcaaacagttatttccagcgcatctac
aaccacccacctcacccaacgatgtctgttgatgaagtactggagatgctgcagaggttt
aaggattcaaccatcaagcgggagcgagaggtgttcaattgtatgctccggaacttgttt
gaggagtaccgcttcttcccccagtacccagacaaggagctgcacatcactgcctgcctt
tttggcggcattatcgagaagggtctcgtcacatacatggcccttggcttggccctccga
tatgttcttgaagccttaagaaaaccctacggatccaaaatgtattactttggaattgct
gctctagataggtttaaaaacagactaaaggactaccctcaatattgtcaacatctggct
tcaattgcccacttcttgcaatttccccaccatttacaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggaccctccggtgaagatgcagggttccatcaccactcctggc
agtttggcactggcacatgtccaagcccaggcccagtcgcagcagccgggtggtcccaaa
gctccacaaccaggacagcccagcactctagtcaccaccacaacaactacaacaacagca
gccaagaccaccaccatcacaagacctacaaccagcttcaagaaggatgttcctccctcc
ataaacacaaccaacattgacaccctgctggtggccactgaccaaacagaaaggattgtc
gagcctccagagaatgtgcaggagaagatcgcttttatcttcaacaacctttctcagtcc
aacatgacacagaaggttgaggagttgaaagagactgtgaaggaggagtttatgccctgg
gtgtctcagtacctggtgatgaagcgtgtcagcattgagcccaacttccacagtctctat
tccaactttctggatactctcaagaaccctgagtttgtcaagatggtcctcactgaaact
tacagaaatatcaaggttctgttgacctctgacaaggcagctgccaatttctctgatcgc
tctctgctgaagaatctgggacactggttgggcatgattacactggccaaaaacaagcct
atcctttatacagatctggaagtcaaatctctgcttctggaggcctatgtgaaaggccaa
caggagcttctgtatgtggttccatttgtggccaaggtgttggagtccagtctacgaagc
atggtcttcaggccccagaacccctggacaatggccattatgaatgttcttgctgagttg
catcaggaacatgacctcaagcttaacttaaagtttgagattgaagttctgtgtaagaac
ctgtctctggacatcaatgacctcaagccaggaaacttgctaaaggacaaggagaagtta
aagagcctggaggagcagctctcagcaccaaagaaagaggcaaagcctccagaagagatg
ttgccagtctctactgcaggagactttgttccatttgcagctcctccctcaaccccagct
gccaccaccaccacctgcacaaccactgggccccccacgccacagttcagttaccacgac
atcaatgtgtatgccttggcaggcctggctccacacatcaatataaatgtcaacatccct
ctgctgcaggcccatcctcagttgaagcagtgtgttcggcaatcagtagagcgagctgtc
caggagctggtgcaccctgtggttgaccgctctatcaaaatagccatgacaacctgtgag
cagatcatcaggaaggactttgccctggattcagaggagtcccgtatgcgtgtggctgcc
caccatatgatgagaaacctgactgccggcatggccatgatcacctgccgcgagcccctg
ctcatgagcattgccaccaaccttaagaacagctttgctgctgcacttagggcaccaacc
ccccaacagcgggaaatgatggaagaggctgcagccaggattgctcaagacaactgtgaa
ttggcttgctgtttcattcagaaaactgctgtggagaaggctggccctgaaatggacaag
agactagccacggagttcgagctgaggaagcatgcacgtcaagagggacgtcgttattgt
gatccagttgtcctgacgtaccaggctgagcgtatgccagagcagatcagactcaaggtg
ggaggagtggaccccaagcagcttgctgtatatgaggagtttgctagaaacgttccaggt
ttcctacccagcaatgatctctcccaacccactggctttttggctcaacccatgaagcaa
caggcatgggccaccgatgatgtggctcagatctacgataagtgcatggcagacctggag
cagcatctccatgccatccctcctgcccttgccatgaaccccctgacccaggctttgcgt
agcctgctggaagctgtggccttggctagaaactctagggacggcatcgctgcacttggc
ctgctacagaaggctgtggagggtcttctggatgctactagtggggctgatgcagacttg
ctgctccggtatagggagtgccatctgctggtgcttaaagccctacaggatggacgtgcc
tatggaccacaatggtgcaataagcagatcaccaggtgtctgattgaatgtcgtgatgag
tacaaatacaacgtagaggcagtggagcttctgatcaggaaccatttggtgaacatgcag
cagtatgacctgcacctggcacagtcaatggagaacggactgcactacatggcggttgca
tttgccatgcagctggtgaagctgctgcttgtggatgaacgcagtgtcagccatgtcaca
gaggctgacctcttccacacgattgagactttaatgaggacctgtgcacattccagagcc
aacgcacctgagggtcttccccagctgatggatgttgttcggtccaactatgaggccatg
attgaccgggcccatggcggacccaactttatgatgcactctgggatttcacaggcgtca
gaatatgatgatcctccaggccttagggagaaggcagagtacctcctgagggaatgggtg
aacctgtatcactcagcagctgctggcagggatagcaccaaggctttctctgcctttgtt
ggccagatgcaccagcagggcatcctgaagaccgatgacctgatcacaaggttcttccga
ctgtgcactgaaatgtgtgtggagataagctatcgggctcaggctgagcagcagcacaac
ccagcagccagtgcagctattatcagagccaagtgttaccacaacctggatgcctttgtg
aggctcatagcactgttggtcaaacactctggagaggccaccaacacagtgacaaagatc
aacctcctcaacaaggtgctgggtattgtagttggggtattgatccaggaccacgacgtc
cgtcagacggaattccaacaactgccgtaccaccgcattttcatcatgctgctgttggag
ctcaatgcccccgaacatgtcttggagaccatcaacttccagacactcactgccttctgc
aataccttccacatcctgagacccaccaaagcacccggctttgtctatgcttggctggaa
ctcatctcccatcgcatcttcatcgccaggatgttagcacacacaccacagcagaagggt
tggcccatgtatgcgcagctgctgattgatctcttcaagtacctggccccattcctgagg
aatgtagagctcaacaaacctatgcaaatcctctacaagggcacactgcgagtgctcctg
gtcctgctgcatgacttccctgagttcttgtgtgactaccattacggcttctgtgatgtg
atcccacccaactgcatccagctccgcaacctcatcctcagtgcctttccacgcaacatg
aggctccctgacccattcacacccaacctgaaggtggacatgctgagtgagatcaacatc
gctccccgtatcctcaccaacttcacaggcgtcatgccttcccagttcaagaaggatctg
gactcgtatctgaagactcgttcaccagtcactttcttgtctgagctgcgcagcaacctg
caggtgtctaatgagccaggaaaccgctacaacatccagctgatcaatgctctggtgttg
tacgtaggcacacaggcaatcgctcacatccacaacaagggcagcaccccctccatgagc
accatcactcactctgcgcacatggacatcttccagaacctggccgtagacctggacact
gaggggcgttacctgttcttgaatgcgatcgccaatcagctgcgctaccccaacagccac
actcattacttcagctgcaccatgctctatctgtttgctgaggccaacaccgaggccatc
caggagcagatcaccagggttctgttggagaggctgatagtgaacaggcctcacccatgg
ggtctcctcatcactttcattgagctgatcaagaatcctgccttcaagttctggagccac
gactttgtgcactgtgcccctgagattgaaaagctgttccagtcagtagcccagtgctgc
atgggacagaagcaggcccagcaggtcatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
