Acanthopagrus latus (yellowfin seabream): 119028777
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Entry
119028777 CDS
T08233
Symbol
smx5
Name
(RefSeq) smx5
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119028777 (smx5)
09123 Folding, sorting and degradation
03018 RNA degradation
119028777 (smx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119028777 (smx5)
03041 Spliceosome [BR:
alat03041
]
119028777 (smx5)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119028777 (smx5)
mRNA degradation factors
5'-3' decay
Lsm complex
119028777 (smx5)
Spliceosome [BR:
alat03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119028777 (smx5)
Complex C
U2 snRNP components
119028777 (smx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
119028777
NCBI-ProteinID:
XP_036970932
LinkDB
All DBs
Position
11:5336750..5339665
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttctactcgtttttcaagtcgctggtggggaaggatgtggtggtggagctcaag
aacgacttgagcatctgtgggacgcttcattctgtggaccagtacctgaacatcaagctc
acagacatcagtgtcacagatccagagaagtatccacacatgctgtctgtgaaaaactgt
ttcatccgtggatctgtggtccggtacgttcagctacctgcagatgaagttgacacgcag
ctgctgcaagacgctgcacggaaagaagcaatgcaacagaagcagtga
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integrated database retrieval system
