Alcaligenes sp. NLF5-7: MID00_08195
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Entry
MID00_08195 CDS
T10407
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MID00_08195 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alcn03021
]
MID00_08195 (rpoB)
03400 DNA repair and recombination proteins [BR:
alcn03400
]
MID00_08195 (rpoB)
Enzymes [BR:
alcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MID00_08195 (rpoB)
Transcription machinery [BR:
alcn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MID00_08195 (rpoB)
DNA repair and recombination proteins [BR:
alcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MID00_08195 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
UTM03376
LinkDB
All DBs
Position
1750261..1754373
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQQVPYLLATQLHSFRTFLQKDTLPSQRKVEGLQEAFSSI
FPIVSHNQMARLEFVSYTLGEPVFDVKECQLRGLTYASPLRAKVRLVLMDREVSKPTVKE
VKEQEVYMGEMPLMTDNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLKAIGLTPEQILAHFFEFDHIELHQEG
GKLQFVPEHWKGEVARFDITDRDGRVLVEKDKRINAKHLRDLQAAKIEYISIPEDFLLGR
VLAKNIINAETGEVIANANDEITESILAEMRAANVRDFETLYVNELDQGGFISLTLRTDE
TADSNAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEESYDLSRVGRMKVNSRLGRGDSI
EGPMTLTDEDILDTIQVLVNLRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAVKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
VDGKVSEQIDYLSAIEESNYVIAQANAELTEDGAFADDLVACREAGETMMTAPENIHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQARRGGVVVDVDAQRVVIRVHDDENVAGEVGVDIYNMTKYTRSNQNTNINQRPIVKRG
DIVARGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSVHIE
ELTVVARDTKLGPEDITRDISNLSEIQLNRLDDSGIVYIGAEVRADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIERDKRAQSIIDDELR
RYRQDLNDQLQIVEDDAFDRALKFLVGKTVNGGPRKLPKGTELTADYLNDLDRWQWFDIR
LADEQHALVLEHTKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRIVPVEDMPHMADGTPVDIVLNPLGVPSRMNVGQVLEVHLGWAA
KGIGHRINDMMQEEKNVQVSELRAFLDKVYNTAGKKTRINELTDDEVMNMATNLQKGLPL
ATPVFDGATEQEIDQMLRLAYPDDIAEKLQLAPHRTQVRLFDGRTGEAFERMVTVGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDIAGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLSLDMDLERK
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttattcgtacaccgaaaaaaagcgcatacgcaagagcttcgccaaacgtgaagac
gtacagcaggttccttacctgttggctacccagctgcattctttcagaaccttcttgcag
aaggacacgctgccttctcagcgtaaggttgaaggcttgcaggaagctttcagttccata
tttccaatagtaagccataaccaaatggcgcggctagagttcgtgagctatacgctcggc
gagccggtgttcgacgtcaaagagtgtcaacttcgtggtttgacctatgcttcccccttg
cgggcgaaggttcgtctggtccttatggaccgcgaggtgagcaagcctaccgtcaaggaa
gtaaaagagcaagaagtctacatgggcgaaatgcccttgatgactgataacggctctttt
gtgatcaacggtaccgaacgagtcatcgtttcccagctgcaccgttcccccggcgtgttc
tttgaacacgaccgcggtaaaacgcacagctcgggcaagttgctgttctcggctcgcgtg
attccttaccgtggttcctggctggacttcgagttcgatcccaaggacattctgttcttc
cgtatcgaccgtcgtcgcaagatgcctgtgactatcttgctgaaggccattggcctgacg
ccagaacagatcctggcccacttcttcgagttcgatcacatcgaactgcaccaggaaggt
ggcaagctgcaattcgttccagaacactggaagggcgaggttgctcgtttcgacattacc
gaccgtgatggtcgcgtactggttgaaaaggacaagcgtatcaatgccaagcatttgcgc
gacctgcaagcagccaagatcgaatacatttccatcccggaagatttccttctgggtcgt
gtgctggccaagaacatcatcaacgccgaaaccggcgaggtgattgccaacgccaacgac
gaaattaccgaatccattctggctgaaatgcgcgcagccaatgtgcgtgatttcgagacc
ctgtacgtcaacgaactggatcagggcggctttatctccctgaccctgcgcacggacgaa
acagcggattccaatgctgcccgcatcgcgatctatcgcatgatgcgtcccggcgagcca
ccaaccgaagaagcggttgaggctttgttcaaccgtctgttctacagcgaagagtcctac
gacttgtcgcgcgtgggtcgcatgaaggtgaacagccgtctgggccgtggtgacagcatt
gaaggtcccatgaccctgaccgacgaagacatcctggacaccattcaggtgctggtgaat
ctgcgtaacggccgcggtcagatcgacgatatcgatcacctgggtaaccgtcgtgttcgt
tgtgtgggcgaattggccgaaaaccagttccgcgccggtctggtgcgtgtggaacgtgct
gtcaaggaacgtctgggccaggccgagaccgaaaacctgatgccgcacgatctgatcaac
tccaagcccatctctgcggccgtcaaggagttcttcggttccagccagctgtcgcaattt
atggaccaaaccaacccgctgtccgagatcacgcacaagcgtcgtgtttcggcactgggc
cctggtggtctgactcgtgaacgtgctggctttgaggtgcgcgacgtgcacccaacccac
tacggtcgcgtgtgcccgattgaaacgcctgaaggtccaaacattggtctgatcaactcc
atggcgctgtacgctcgtctgaacgagtacggcttcctggaaacgccttaccgcaagatt
gttgacggcaaggtcagtgaacagatcgattacctgtcggctattgaagaaagcaattac
gtcatcgctcaggctaacgccgagttgaccgaagacggtgcttttgctgacgatctggtt
gcctgccgtgaagctggcgaaaccatgatgactgcgccagagaacatccattacatggac
gtggctccttcgcagatcgtgtctgtggctgcttcgctgattccgttcctggagcacgat
gacgctaaccgagcactgatgggcgccaacatgcagcgtcaggcagttccttgcctgcgc
cctgagaagcctttggtcggtaccggtatcgaacgtactgttgctgttgactcgggtacc
accgtacaggcccgtcgtggcggtgtggttgtagacgttgacgcacagcgcgtggttatt
cgcgtacacgatgacgagaacgtggctggcgaggtcggtgtagatatctacaacatgacc
aagtacacccgttccaaccagaacaccaacatcaaccagcgtcctatcgtcaaacgtggc
gatatcgtggctcgtggtgacgtgctggctgacggcgcatcgactgacctgggcgaattg
gctctgggtcagaacatgctgatcgccttcatgccctggaacggctacaacttcgaggac
tcgattctgatctccgagaaggtcgtggctgacgatcgttacacgtcggttcacatcgaa
gagttgacggttgttgcccgtgacacgaagctgggacctgaggatatcacccgcgatatc
agcaacctgtccgaaattcagctgaaccgtctggacgattccggcattgtgtacatcggt
gccgaagtgcgtgccgacgacgtgctggtcggtaaagtgacacccaagggtgaaactcag
ctgactccggaagaaaagctgctgcgcgccatttttggtgaaaaagcctctgacgttaaa
gacacctccctgcgcgtgccttcgggcatggtcggtacggtgatcgacgttcaagtcttt
acccgtgaaggtatcgagcgtgacaagcgtgctcagtccatcattgatgatgaactgcgt
cgctaccgtcaggacctgaacgaccagctgcaaatcgttgaagacgacgcctttgaccgt
gccttgaagttcctggtcggcaaaaccgtcaacggtggtccacgcaagctgcccaagggc
accgagctgaccgctgactacctgaacgatctggatcgctggcagtggttcgacattcgt
ctggctgacgagcaacacgcactggtgctggagcacaccaaggaatccttggagcaaaag
cgtcaccagttcgacttggcttttgaagaaaagcgcaagaagctcacccaaggcgacgag
ttgcctcctggcgtgctgaagatggtcaaggtttacctggctgttaagcgtcgtctgcag
cctggtgacaagatggctggccgtcacggtaacaagggtgtggtttcccgcatcgttccc
gtggaagacatgccgcacatggctgacggtacccctgtggacatcgttctgaacccgctg
ggcgtgccttcgcgtatgaacgtgggtcaggttctggaagttcacctgggttgggctgcc
aagggtattggccaccgcatcaacgacatgatgcaagaagaaaagaacgtgcaggtttcc
gaactgcgcgcgttcctggacaaggtctacaacactgccggcaagaagactcgcatcaac
gagttgactgacgacgaagtgatgaacatggccaccaacttgcagaaaggtctgccattg
gctacgccagtgttcgacggtgcaaccgagcaggaaatcgaccagatgttgcgtctggcc
taccctgacgacatcgccgaaaaactgcagctggcaccacaccgcacgcaggttcgcctg
tttgacggtcgtaccggcgaagcctttgagcgtatggtcaccgtaggctacatgcactac
ctgaagctgcatcacctggtcgatgacaagatgcacgctcgttcgacaggtccgtactcc
ctggttactcagcagccgctgggtggtaaggcgcagttcggtggtcagcgtttcggggag
atggaagtctgggcgctggaagcgtatggcgccgcctacaccctgcaggaaatgctcacg
gttaaatccgacgacatcgccggccgtaccaaggtctacgagaatattgtcaagggtgac
cacgtgatcgacgccggtatgccggagtcctttaacgttctggtcaaggaaatccgttcc
ttgtccctggacatggatttggagcgtaaataa
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