Alteromonas sp. Mac1: AV939_18130
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Entry
AV939_18130 CDS
T05687
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ale
Alteromonas sp. Mac1
Pathway
ale03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ale00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AV939_18130 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ale03021
]
AV939_18130 (rpoB)
03400 DNA repair and recombination proteins [BR:
ale03400
]
AV939_18130 (rpoB)
Enzymes [BR:
ale01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AV939_18130 (rpoB)
Transcription machinery [BR:
ale03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AV939_18130 (rpoB)
DNA repair and recombination proteins [BR:
ale03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AV939_18130 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AMJ88963
LinkDB
All DBs
Position
complement(4287520..4291548)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTQNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFEKVSVRIDKDKLMME
VVPDRLRGETAAFDIIDGEGNVVVETGRRVSARHTRALEKAGLTELEVPADYLIGRVFAA
TYVNEDTGEVIVSANEELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFQNLFFSDERYDLSSVGRMKFNRRLGREELIGSGT
LDKDDIVSVMKQLIEIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDSIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
SEEIDYLSAIEEGQFAIAQANIVLTANGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGRVDYVDASRIVIKVEEDEMLPGEAGIDIYNLTKYTRSNQNTCINQRPTCSVGDPIVA
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAQNALLRSGVEQAKLDSLPREKWFEIALNDEDVQLEIDQIADQHA
EIKEDFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHMGMAAHGLGVKIDRMLKEHEEMQ
KLRNFLKEIYELGENHQEVDIDNFTDHEITRLANNLRKGVPIATPVFDGARESEIKEMLK
LADIPESGQISLFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
atcgacgccgatgctcaatacggcttggaagcagcatttcgttccgtttttccgataaaa
agctactcaggtaactcggagcttcaatatgttagctaccgtttgggagagccagtattc
gacgttaaagaatgtcaaattcgtggcgtcacattctctgctccattaagagtaaaacta
cggttagtattgtttgataaagacgctgcgccaggtaccgtaaaagacattaaagaacaa
gaagtgtacatgggcgaaatcccattgatgactcagaacggtacgttcgttatcaatggt
acagagcgtgttatcgtgtcacaactacaccgttcacctggtgtgttcttcgatcacgat
aaaggcaaaactcactcgtcaggaaaagtgctttataatgcacgtgtaattccttaccgt
ggttcttggcttgatttcgagttcgatccaaaagataacctgtttgttcgtattgaccgt
cgtcgtaagttgccagcaacaatcatcttacgcgcgcttgaaatgacatcagaagaaatc
ttggatacgttcttcgagaaagtcagtgtacgtatcgataaagacaagttaatgatggaa
gtggtgccagatcgtcttcgtggcgaaacagcggcatttgatatcattgacggtgaaggt
aatgttgttgttgaaaccggtcgtcgtgtatctgcacgtcatacccgtgcgcttgaaaaa
gcgggtttaactgaacttgaagttccagcagattacctaatcggtcgcgtattcgcggca
acgtacgtaaatgaagatactggcgaagttatcgttagcgctaacgaagagttaacgctt
gagaacttagcggcacttagccaagctggtattaaagagttcgaaacgctgtacattaat
gaattggaccacggttcatacatttctgacacattgcgtatcgactcttcaacaaaccgc
ctagaagcgcttgttgaaatttaccgcatgatgcgtcctggtgagccaccaacaaaagac
gcagcagaaaccttattccaaaaccttttcttctctgatgagcgttatgatctatcttct
gtaggtcgtatgaagttcaaccgccgtttaggccgtgaagaattgattggttcaggcacc
ctagataaagacgatattgtttcagtaatgaagcaacttatcgagattcgtgacggcaaa
gacgaagtggacgatatcgaccacttgggtaaccgccgtattcgttctgtgggtgaaatg
gctgaaaaccaattccgtgttggtttagtacgtgttgagcgtgctgttaaagaacgtcta
agcttaggcgaccttgatagcattatgccgcaagacctaattaacgctaagcctatctcg
gctgcggttaaagagttcttcggttcatcacagctttctcagttcatggaccaaaacaac
ccgttatcagaagtaacgcataagcgtcgtatttctgcattaggcccgggtggtcttacg
cgtgagcgtgcaggcttcgaagtgcgtgacgtacaccctacgcactacggtcgtctgtgt
cctatcgagactcctgaaggtccaaacatcggtttgatcaactcattggcgagtttcgca
cgcaccaatgattttggtttccttgaaacgccgttccgtcgcattgttgatggcgtggta
agtgaagaaatcgattacttgtctgcaattgaagaaggtcaattcgcaattgcacaggca
aacattgttttaaccgcaaacggtgagctagtagacgaccttattccatgtcgtcaccgt
ggtgaaaccaccttgatgccgaaagaagacatcaagtacatggacgtttctccacagcaa
atcgtttcaatcgctgcgagtatcattccgttcctagaacacgatgatgctaaccgcgca
ttgatgggtgcgaacatgcaacgtcaggctgtacctacattacgtgctgataagccgctt
gttggtaccggtatggaaagaaccattgctgttgactcaggtgttactgtagttgctaag
cgtggtggtagagttgactatgttgacgctagccgtatcgttattaaagtagaagaagat
gaaatgcttcctggtgaagcaggtatcgacatctacaacctgactaaatacacacgttct
aaccagaacacctgtatcaatcagcgtcctacttgtagtgtaggcgacccgattgttgct
ggcgatgtattggctgacggtccatctactgacttgggcgaccttgctcttggtcagaac
atgcgtatcgcgttcatgccttggaacggttataacttcgaggattcaatccttatctct
gagcgagtagctcaggaagaccgtttcaccactatccacattcaagaactaagctgtatt
gctcgtgataccaagcttgggccagaagaaatttcttctgatattccgaatgttggcgaa
tctgcactaagcaaacttgatgaatcaggtgttgtttacattggtgcggaagtgaaaggc
ggcgacattctggtaggtaaagtaacacctaaaggtgaaactcaacttacgccagaagaa
aaactattaagagcaatcttcggtgaaaaagcgtctgacgtaaaagatacgtcactacgt
gtgcctaactctgttcacggtacggttatcgacgttcaagtctttacccgtgacggcgta
gagaaagacaaacgtgcgcttgaaattgaagacatgcaacttcgtcaggttaagaaagac
cttactgacgaatttgaaattcttgcagacggtatctttgctcgtgcacaaaacgcatta
ttacgctctggtgttgaacaagctaagcttgacagcctaccgcgtgagaagtggtttgaa
attgcattaaacgacgaagacgtacagcttgagatcgaccaaattgctgatcagcacgca
gaaatcaaagaagacttcgataagaagtttgaaactaagcgtcgcaagatcacacaaggc
gatgacctagcaccaggtgtccttaaaattgttaaggtttacctagctgttaaacgtcat
atccagcctggtgataagatggccggtcgtcacggtaacaaaggtgtaatttcaacgatt
cagcctgtggaagatatgccatatgatgctaacggtacgccggtagacatcgtattgaac
ccactaggtgtaccatcgcggatgaacatcggtcagatcctagaaacacatatgggtatg
gctgctcacggtcttggtgtgaaaatcgatcgcatgctgaaagagcatgaagagatgcag
aagcttcgtaacttcttaaaagaaatttatgagcttggcgaaaatcaccaagaagtggac
atcgataacttcaccgaccacgaaattacacgtcttgcaaacaacctacgtaagggtgtt
ccaattgcaacacctgtattcgacggtgcacgtgaatctgaaattaaggaaatgttgaag
ttagctgacattcctgaaagcggtcagatttcgttgttcgacggtcgtactggtcgcgag
tttgagcgtccggttacggttggttacatgtacatgctgaaactgaaccacttggttgac
gacaaaatgcacgctcgttcaactggttcgtacagccttgttacacaacaaccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggagagatggaagtgtgggcccttgaagct
tacggtgcagcatatacccttcaggaaatgcttactgttaagtcggatgatgttaacggc
cgtactaagatgtacaagaacatcgtcgatggtgaccacagaatggaacctggcatgcca
gaatcattcaacgtattacttaaagaaatccgctcgttgggtattaacatcgagttggaa
gagaagtaa
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