Algoriphagus sp. NBT04N3: GYM62_14245
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Entry
GYM62_14245 CDS
T09623
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GYM62_14245 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
algo03021
]
GYM62_14245 (rpoB)
03400 DNA repair and recombination proteins [BR:
algo03400
]
GYM62_14245 (rpoB)
Enzymes [BR:
algo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GYM62_14245 (rpoB)
Transcription machinery [BR:
algo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GYM62_14245 (rpoB)
DNA repair and recombination proteins [BR:
algo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GYM62_14245 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QYH39889
LinkDB
All DBs
Position
complement(3281914..3285789)
Genome browser
AA seq
1291 aa
AA seq
DB search
MAIKNQTERKSFSSIKVVKDYPDFLDIQLQSFKDFFQLDTPAEKRRADGLFKVFSENFPI
SDSRENFTLEFIDYAVDPPKYSVGECIDRGLTYSVPLKAKLRLLCHDEDNEDFETIEQEV
FLGNLPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIE
FATDINNVMYAYIDRKKKFPVTTLLRAIGYGSDKDILDLFGLSEEVSATKTALKKAAGRK
LAARVLRTWVEDFVDEDTGEVVSIDRNEVLLERDTVLTDEDIEMILDSGSKSIILHREDV
NIADYSIIYNTLQKDNSNSEKEAVEVIYRQLRNTEAPDEATAREVIHSLFFSDKRYDLGE
VGRYRINKKLGLDIEAEKIVLTKEDIISIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQ
LYSQFGVGLARMARTIRERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAELTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KVNSMGFLETPYRKVKEGKVGMKQEDIVFLTAEEEDDHNIAQANAPLDEKGTFVNERVKA
RFEGDFPVLEPSEISYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAE
APIVGTGLEAKAAIDSRSLIIAEADGVVDYVDAKKITIKYDLSDDELLVNFTDEYKTYDL
IKFRRTNQDTTINLTPLVLKGQRIEKGQVLVEGYSTNNGELALGKNLKVAYMPWQGYNFE
DAIVISERVVREDIFTSIHVEEFQLEVRDTKRGEEELTSEIPNVSEDAVKHLDENGIIAV
GAEVKEGDIIIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIETKL
FSRPKKDKDNRAKAKAEVEKLKAKYSKDLLGIRARMINKLVTILDGKTSLGVKHKFGDEI
ISKGMKFNAKNIENNLFPAKNPYRDESNYNVPEEANLISDIILDDWTDDAHTNNLIVQLV
KNYTNSRNEISGRFKRERFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGI
VARIVRDEDMPFLEDGTPMDIVLNPLGVPSRMNIGQIFETVLAWAGQKLGKKYATPIFDG
ASMEEVSAELDAAGLPSYGRTYLYDGLTGAKFDQPVTVGVAYMLKLGHLVDDKMHARSIG
PYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTVKSDDVIGRAKAYEAIV
KGENLPKPNIPESFNVLVHELRGLALEITLD
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttggctatcaagaatcaaaccgaaaggaaaagtttctcctccattaaggtggtcaaagac
tatccggattttctcgatattcagttgcagtctttcaaagatttcttccagctggatacg
cctgcagaaaagcgccgggctgacggattattcaaagtgttttctgagaattttccgatc
tctgattccagagaaaacttcactttggaatttatcgattatgcagtggatccacctaaa
tatagtgtgggtgaatgtatagatcgtggtttgacctactcagtacctttgaaagcaaaa
ttaagattgctttgccatgatgaggacaatgaggatttcgaaacaatcgaacaagaagtt
ttcttaggcaacttgccttacatgactgagaagggttcgtttgtaatcaatggcgcagag
cgtgtgattgtatctcaattgcacagatcaccaggtgtattttttgctcaaagtaagcac
actaatggtacgaaattatactctgcccgtatcattcctttcaagggttcttggattgag
tttgctactgacatcaacaatgtcatgtatgcttacatcgatcgtaagaagaaatttcct
gtaactaccctgctaagagctatcggttacggttcagataaagacattttggatttattt
ggcctatccgaagaagtatcggcaaccaaaactgctttgaaaaaagctgcaggcagaaaa
ttagctgctagagttttgagaacatgggttgaagacttcgtagatgaagatacaggtgag
gtagtttccatcgatagaaacgaagtattgcttgagcgtgataccgttttgacagatgag
gatattgaaatgattttggactctggctctaagtctatcattcttcacagagaggatgta
aacattgccgattactctatcatctacaatacacttcaaaaagataattctaactcagag
aaagaagcggtagaagtaatttaccgtcaattgagaaacactgaagctcctgatgaggct
actgcccgtgaggtgattcactctcttttcttctctgataagcgatatgacttaggtgaa
gtaggccgatacagaattaataaaaaattgggtctggacatcgaggctgagaaaatcgta
ttgactaaagaggatattatttccatcgtgaaatatttgatcggtttgatcaactctaaa
gcagtagtcgatgatatcgatcacctttccaatagaagagtaagaactgtaggggagcag
ctttacagccagtttggagttggtttggcgagaatggccagaacaatccgtgagcgtatg
aacgtacgtgacaacgaagacttcaaaccagttgatttgatcaacgctcgtacgctttcc
tcagtaatcaactctttcttcggtaccaaccagctttctcagttcatggatcaaaccaat
ccattggcagagttgacgcacaagcgtagactttctgctttgggtccaggtggtctatcc
agagaaagagcgggtttcgaggttcgtgacgttcactatacacactatggtcgtctttgt
actatcgaaactccggaaggtccaaacatcggtttgatttcttctctttgcgttcacgca
aaagtaaactccatgggattccttgaaacaccttatagaaaggtgaaagaaggtaaagtg
ggtatgaagcaggaggatattgtattcttgactgcagaagaagaagatgaccataacatt
gctcaggcaaatgctcctttggatgaaaaaggaactttcgtaaatgagcgagtaaaagca
agatttgaaggtgacttcccagtgttggagccttctgaaatcagctacatggacgttgct
ccaaaccaaattgtatctgttgcggcatctttgattccattcttggagcatgatgatgcg
aaccgtgcattgatgggatccaacatgcagcgtcaggcagttccattgttgaaagctgaa
gcacctatcgtaggtacaggcttagaagcaaaagctgctattgactccagatctttgatt
attgcagaggctgacggtgtagttgattatgtagatgctaagaaaatcaccattaagtat
gacttgtcagatgatgagttgttggtgaatttcacagatgaatacaaaacctacgatctg
attaagttcagaagaaccaaccaagatactaccatcaacttgactcctttagttttgaag
ggtcagagaattgaaaaaggtcaggtattggtggaaggttactctaccaacaatggtgag
ttagccttgggtaaaaacttgaaagttgcctacatgccttggcaaggatacaacttcgag
gatgcgattgtaatttctgagcgagtagttcgtgaagatatctttacttccatccacgtt
gaagaattccagctagaggtaagagataccaagcgtggagaagaagaattaacttctgaa
attcctaacgtttctgaagatgcagtgaagcatttggacgaaaacggtatcattgcagta
ggtgctgaagtaaaagaaggagatatcattattggtaagattactccaaagggtgaaaca
gatccaactcctgaagagaaattgctaagagcaatcttcggtgataaagctggtgatgtg
aaagatgcttctttgaaagcttctccatccttgaatggtgtggtaatcgagaccaaattg
ttctccagacctaagaaggacaaagacaatagagctaaagctaaggcagaggttgaaaaa
ctgaaagctaagtattccaaagatcttttgggcatcagagccagaatgatcaataagctg
gtaactatattggatggtaagacttctttgggagtgaagcataagtttggtgatgagatc
atctccaaaggaatgaagttcaacgcgaagaacattgaaaacaacttattccctgctaag
aacccttacagagatgagtctaactacaatgttcctgaagaggcgaatttgatttctgat
atcatcttggatgattggactgatgatgcacacaccaacaatctgattgttcaattggtg
aaaaactacactaactcaagaaatgagatcagtggtagattcaagagagaaagattcact
ttggaagttggagacgagttaccagcaggtatcgttcagcttgctaaagtttacatcgct
aagaagcgtaagctgaaagtgggtgataagatggctggtcgtcacggtaacaaaggtatt
gttgccagaatcgtaagagacgaagacatgcctttcttggaagacggaactccaatggat
atcgttctgaacccattgggtgtaccttctcgaatgaacatcggacagattttcgaaaca
gtattggcttgggccggacaaaaattaggtaaaaaatatgctactccgattttcgatgga
gcttctatggaagaggtttctgctgaattggatgctgctggattgccttcttatggacgt
acctacctatatgatggattgaccggagctaaattcgatcagcctgtgactgtaggtgta
gcttacatgttaaagcttggtcacttggttgatgataagatgcacgcaagatctatcgga
ccttactctttgattactcagcagccattgggtggtaaagcccagtttggtggtcagaga
ttcggagagatggaggtttgggctcttgaagcattcggtgcatctcacgtacttcaggaa
atcctgacagtaaaatctgatgacgtaatcggtagagcgaaagcttatgaagcaattgtg
aagggtgaaaaccttcctaagcctaacatccctgaatcattcaacgtattggttcatgaa
ctgagaggcttggctcttgaaattaccttagattaa
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integrated database retrieval system
