Austrofundulus limnaeus (annual killifish): 106513932
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Entry
106513932 CDS
T06063
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
3.6.4.13
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106513932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106513932
03009 Ribosome biogenesis [BR:
alim03009
]
106513932
Enzymes [BR:
alim01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
106513932
Spliceosome [BR:
alim03041
]
Complex A
U1 snRNP components
U1 related factors
106513932
Complex B
106513932
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
Pre-60S particles
Helicases
106513932
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UTP25
CMS1
Motif
Other DBs
NCBI-GeneID:
106513932
NCBI-ProteinID:
XP_013858448
UniProt:
A0A2I4ASI6
LinkDB
All DBs
Position
Unknown
AA seq
527 aa
AA seq
DB search
MLASRFRLQCLRLLHSSHGGRPPWFGGSQSGARGGRKNFSFPGERLVKKHWNLNELPKFE
KNFYQQHANVACMSPEEVEEYRTTRAITVTGDCPNPVTKFHEVNFPSCVMEVINKQNWTE
PTPIQAQXWPVALGGKDMVSIAQTGSGKTLAYLLPAIVNISHQPPLKNGDGPICLVLAPT
RELARQVQQVAAXYTRAANLKSTSVYGGAPKYPQLRDLESGVEICIATPGRLIDFLEEGQ
TDLSRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEIRQLANDFLKD
YVQINVGALQLCANHNIRQIVDVCRNEDKEKKLVHLLQDIMSEEENKTIIFVATKMQCDY
LTRRIKKEGWIALGLHGDKRQNERDRVLNKFKTGEAPILIATDVASRGLDVEDVKFVINF
DYPNTSEDYXHRIGRTGRCQKTGTAHTFFTPDNMRQARDLISVLQEANQDINPELTMLAE
AGGRPGVGRNIYRSNYRSNNRSNYRSNYRSNYRDDGLNRQQLFGRGQ
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcttgcctcccggttcagactgcagtgtttgcggctgctacactccagccatggcggt
cgacctccatggttcggtggcagtcaaagtggagccagaggtggtagaaaaaattttagt
tttcccggtgaacgactggtgaaaaaacactggaacctgaacgagctcccaaagtttgag
aaaaacttctaccagcagcatgccaacgtcgcctgcatgtcaccggaagaggttgaagaa
tacaggacgaccagagcaattacagtgacaggagattgtccgaaccccgttacaaagttt
catgaagtcaacttcccctcttgtgtaatggaagtaatcaacaaacagaactggaccgaa
ccaacacccatccaggcacagrgttggccggtggctcttggaggcaaggacatggtcagc
attgctcagactggctctggcaagactcttgcttatctcctgcctgcaattgtcaacatc
agccaccagcctcccttgaaaaatggagatggtcccatttgtttagtgctggccccaact
cgtgagctggcccggcaggtgcagcaggtggccgcagaktataccagagctgctaacctg
aaatcaacctctgtctatggaggagcaccaaagtaccctcagcttcgtgacctggaaagc
ggtgtggagatctgcattgccactccaggcaggcttatcgacttcctcgaggaaggacaa
acggacctcagcaggtgtacctacctggtgctggatgaggctgacagaatgttggacatg
ggctttgagccacagattaggaaaattgttgaccaaatcaggcctgacagacagactctg
atgtggagtgccacgtggcctaaagagattcgccagctggcaaacgacttcctgaaggac
tatgtgcagattaacgttggtgcccttcagctctgtgccaaccataacatccgccagatt
gtggatgtttgccgtaacgaagataaggagaagaagctcgtccatctgctacaagacatc
atgagtgaggaggaaaacaagaccatcatctttgtcgcgacaaagatgcaatgtgattat
cttacccgtagaattaagaaagaagggtggattgctctgggactccacggtgataaaaga
caaaacgaacgagaccgcgttcttaataagttcaaaactggcgaggccccaattctgatt
gctacagatgttgcatccagaggtttagatgtggaggatgtgaaatttgtcatcaacttt
gactaccccaacacctccgaggactatrtccaccgcattggcagaacgggtcggtgccag
aagacgggcacggcccacaccttcttcacaccagacaacatgaggcaggccagggacctg
atctctgttctgcaggaggccaaccaggacatcaatcctgagctcaccatgctggcagag
gcaggaggtcgtcctggagtcggcagaaacatctacagaagtaactacagaagtaacaac
agaagcaactacagaagcaactacagaagcaactacagagatgatggtttgaatcggcag
cagctgtttggtagggggcaatag
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