KEGG   Austrofundulus limnaeus (annual killifish): 106517257
Entry
106517257         CDS       T06063                                 
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03040  Spliceosome
alim04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106517257 (prpf19)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106517257 (prpf19)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:alim03041]
    106517257 (prpf19)
   04121 Ubiquitin system [BR:alim04121]
    106517257 (prpf19)
   03400 DNA repair and recombination proteins [BR:alim03400]
    106517257 (prpf19)
Enzymes [BR:alim01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106517257 (prpf19)
Spliceosome [BR:alim03041]
 Complex B
  Other components
   Prp19 complex
    106517257 (prpf19)
 Complex C
   Prp19-CDC5 complex
    106517257 (prpf19)
Ubiquitin system [BR:alim04121]
 Ubiquitin ligases (E3)
  U-box type E3
   106517257 (prpf19)
DNA repair and recombination proteins [BR:alim03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    106517257 (prpf19)
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Prp19 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_Aladin Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_WDR41 Beta-prop_TEP1_C Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_Vps41 WD40_RFWD3 Beta-prop_DCAF4 U-box Beta-prop_SPT8 Beta-prop_VPS8 PROPPIN Beta-prop_Nup120_160 Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Cytochrom_D1 RMC1_N zf-Nse B-prop_COPA_B_2nd Ge1_WD40 Tricorn_2nd Peripla_BP_2 DUF2518
Other DBs
NCBI-GeneID: 106517257
NCBI-ProteinID: XP_013863461
UniProt: A0A2I4B6T9
LinkDB
Position
Unknown
AA seq 505 aa
MSLVCAICNEVPEHPCISPVSNHVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVTHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
NKEVTAAREALATLKPQAGLVTPQAVPASQPSAAGAGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILALDVCPSDTNKVLT
GGADKNVVVFDKSEEQIVVTLKGHTKKVTSVIFHPSQSMVFSASPDATIRVWSVTGGNCV
QVVRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTDHTGLVT
GVAFGENAKFLTSAGMDRSLRFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctttggtttgcgcgatctgcaacgaggtaccggagcacccgtgcatctctccggtg
tccaatcatgtgttcgagcgcaggctgatcgagaagtacatcgcggagaacgggacggat
ccgatgaacggacagccgctgtctgaggagcagctggtggacatcaaagtgacacatcct
atcagaccaaaggctccgtccgcaacaagtattcctgccattctcaagtctcttcaagat
gagtgggatgctgtcatgctacatagcttcaccttgcggcagcagctgcagacgactcgy
caagaactctcgcacgccctttatcaacacgatgccgcctgcagagtcatcgctcgactc
aacaaggaggtcactgctgccagagaagctcttgccacacttaaacctcaagctggactg
gtgacccctcaagcagtcccagcctctcagccatcagctgcaggtgctggcggagagcct
atggagatcagtgaacaggttggaatgactccagagatcattcagaagctccaagacaag
gctactatcctcaccacagagagaaaaaagagaggaaaaactgttccagaggagctggtc
agagctgaggatctcagcaaatatcgccaagtggcctcgcacgctggtcttcacagtgcc
agtgttcctggcattctggctctggatgtgtgtccctcagacaccaacaaagtcctcact
ggtggagctgataagaacgtggtrgtgtttgacaagagcgaggagcagattgtggtgact
cttaaaggtcacaccaaaaaagtcacctctgtcattttccatccatctcagtctatggtc
ttctctgcctcccccgacgccaccatccgtgtgtggtcggttactgggggcaactgtgtg
caggtggtgcgtgcccacgaggcaggcgtcactggactctctctgcacgccactggagac
tacctgctcagctcctctgaggatcagtactgggccttttctgatattcaaactggtaga
gttctcaccaaagttactgatgaaagtgctggctgtgctctcacgtgtgctcagttccac
cctgatggtctcatttttggcaccggcacggccgactcccagattaaaatctgggatctg
aaggaacgcaccaacgtggccaacttccccggccactctggccctgtcacctccatcgct
ttctctgagaacggatactacctggccacaggtgctcaggatagctctgttaaactgtgg
gatctgaggaaactgaagaacttcaagaccatcacgctggacaacaattatgaggtgaag
tcccttgtgtttgatcagagtggaacctacctggctgtcggagggtctgacattcgtgtc
tacatctgcaagcagtggtctgaggttctcaactttacagaccatacaggactggtgact
ggagtggcctttggagaaaacgcgaagttcctgacctcagcaggaatggacagaagcctc
agattttacagtttgtag

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