Austrofundulus limnaeus (annual killifish): 106519614
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Entry
106519614 CDS
T06063
Symbol
dchs2
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-23
KO
K16507
protocadherin-16/23
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alim04515
]
106519614 (dchs2)
Cell adhesion molecules [BR:
alim04515
]
Cadherins
Cadherin related
106519614 (dchs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_3
Cadherin_2
RET_CLD1
Cadherin_4
PepSY
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
106519614
NCBI-ProteinID:
XP_013866816
UniProt:
A0A2I4BGF0
LinkDB
All DBs
Position
Unknown
AA seq
3289 aa
AA seq
DB search
MGRRSALFLLVLALLCAQSLGQVFNLSLSVKEGLPAKTIVGDLGAVLTRPSTGFFISESR
DSYVFRDLEIDADRGIISTAVVLDRERRDQYEFVAATLTGEMISVRIEVDDVNDHSPVFP
TDEVLLEISELSPPGSRFQIEGAKDQDKGEFGTQGYRITEAEMSELFQLDYRSGSENQHG
LDLILKRKVDRETQDFYLLTIEAFDGGVPVKTGTLQVKVHILDENDNPPVFNQTEYHTSV
GEDASTGSIICQVHASDRDLGDSGRITYEINRRQSDPNYVFSINGTTGLVHLNKRLDFEA
QPFHELIVSARDNGAQPEFSSAFVGIRVLNVNDNSPTISVLFLSETGDAVVSEAAAVGDY
VARISVSDPDFEDEKVTVTLEGGDGKFTLKQTDDFLYALCVNSELDREEKDLYELKVQAS
DLGNPPLSSEEVFLLKVTDTNDCHPVFDKDVYIISIPEDAPVGSSLIQIQARDADEGGNS
DVRYSIMKSQQSDLISIDSESGLITTAAALDREKQVEVWFLVLAADRGDPALSSTATVTV
LVEDINDNEPVFQQQLYNVSLPEHSDVGSCFLQVVATDADSPEFSAVLYSLSDGFDNQEK
HPLFQIHPHTGELCVSQDIDRDSGQTVHDIVVKAEDPGGLSAQTYVHIEIEDVNDNPPVF
SPEEYTVSISSHAPPGTELGNVVATDRDAGRFGQITYHIHPGDVSDLFALDKQTGTLFLN
SSLTHLGAASMKLFITAQDEEGLTSPRPAEVTVNILXSSQAPAVFEVPXYTFTVPEDAPV
GTSVGTVVASNPTDSAGSVSYRLSSGDPHALFSVHPKSGLISSIKPLDHESQPFVLLVLQ
SYTDTSPVYSTTQINITVDDVNDNAPIFAKRSNAITVSQNTQPGMVLFIAHAHDHDSGAN
GRVQYYLKSSQNGTFAIDANLGTVTLNQTLGVRHPRWYNLEIVAKDEGEPPLSSXLTLSV
YVDQTAAEESLSFETLVYQVEIGESHRRDSRVIQVRAHRTQRAHTSNSGLVYSLEAEPGF
TLPPFRIHPKTGWLYLSRSLDYETESSYRFQVLATSKEASVANITATATVTVQVLDVNDN
APVFSSEVYYFTVCEGSSPQGLIGRVTAIDKDSGKNSQLSYILLSDGKFFRINAKTGEII
NWVALDREQHSQHSVKVMVTDQGRPRLNATATVHILITDVNDNAPQFTHLPASKELSVHI
WAGVPAGFLVMNMFAKDLDAGENGTVTHSLITVGLTDEHFEIDSETGDIRSTHLFIQTTE
TFYTLRITARDRGATPQEETAVLHVQVYGLEDLYSSSDHXALRHFSVREDADPATIIGSA
SVSEEGRFQYSIAEGDGSVYFGIDATSGEIYVNQPLDYESAMQYFLIIRAEDVGPAPGVN
VSVLVSVAVEDVNDHTPWFPEKLLMFGLREDAVVGSLAFAFHARDADGTYPNSALFYSLT
FDPEISGSPSHLPFHLNPRTGSLTVVAPLDRESTPSFVFAVTATDQAERLDERKQTAVTV
QLFLLDVNDNRPVFVSADRVQLMEDTEVGSLVHHFAAIDGDQGENGEVSFSIMAGNKKGL
FTLEEKTGLLFLSTPLDYETRRVHRLTVRAVDHGLPSLSSTQTLTVEVGDVNDHPPVFSQ
TTYNTSVAENRDPGETVVRVSATDMDSEENSVVWYSLLPGPGYEFFSINPYTGLITTTSH
LDREKHQHFILRVEARDSGARPFSGTAVVLCSVLDDNDNPPEFMQSSLQIRLPENLPPGV
IHTVQASDPDHGENGTIHYSIJGKEPICGSVSQALIPFNPSQSLNPCSLPPGEDHRGRFT
IDSHSGSISTIQILDREEAQNYTLTIQAQDYGPTSLSSTTQLXLVLLDQNDNVPTFSIES
YHASISEGLPAGAEVLSLSAXDPDDGPNGDVTYSLTEDSSHGAFSVDLYTGLIRTTRSLD
RESVSQYTLRAVATDSCAQGPLSSVASVTVQVEDVNDNPPVCDQNPFNAWVSTRTPPNQI
VTTVVATDGDQGENGTMQFVLSDXENLFDVNTNSGEISLRRRVRAGFTGKKLQVLVSDRG
HPSLTSTCLVFIHLKGEHDGLQFTNKVYNVTVEENSRAGTLVAKVEANDETNSRQRITYT
IFSGNENLVFSMNXHTGEIRVQKDHILDFEVSPQIQLVVLADSGTQTAHCRVSITLLDVN
DNSPQFEHSSYRTSVWEGQVRNTYIMQVFASDTDSGVNGQIEYSILSGNTNEAFVLDSMR
GILATNVLLDREITSSYKLILQATDKGKQPLSSTTNVRVQVVDINDNSPVIPPMKPVFIA
ENLPAGYLVTQVAANDVDLSSTITYSFSDNSSTSHPFAIDRYTGAITLTQALDFEIKSEY
SLTVWASDSLHQTTGEVKVQVFDANDNAPVFTQASYQVELSELVTEDTLVVALAATDEDS
GLNGNISYTLLSSPLQGFYIQPDSGAVFTSKPLKDLANSNPIHLLVEARDGGDPVLSTVT
SVSIKILDNNDHEPLFLKDVYALSVPEDTPTETTLLTLSAEDKDWSPENTHLDYDIISGN
ERKRFCLEVKMILIDNRMSNVAKLVLCQPLDRETTESYVLTVTVSDRGTPPLNSSAVIKV
IVTDFNDNPPVFSSTEYHTQVSENSQIGTSVVQVTAQDPDLGINGLVRYSIVSGNDKNHF
KLDYQTGLLLVNHSLDYEQDLKYVLTIRAADGGEASENSKVAFTVVFIEVLDENDNTPYF
MFPTMNCSVLENLPAFTHACSVHAVDKDLGPYGKLTYSILSSCFMDYGSGSPERKEAFAI
DPLTGGIHTRQTFDYERESEYCFVVEARDKGDKTARVRVQMSIKGVDEFSPIFTQKQYNF
LLPENIKTGDTVGFVMAMDHDGGVDGLVEYSLLNSSPFFSINKTIGAIFVSDPINRRGGS
YANKDTVELTVSAGSPKLGSRTTTCLVFINISSSAEALVGVHLESHMLSLSLALLLFLFV
LVIFVGLVFKFKVKEATLGKAAAVVPHLNHSTGSFDESNGQMQRAIALQDLPQCRILVTK
RDNVNSYNHSDSSGRGSAEGETAEDQEIKWINEYPCHKEDTFEKHATEIPNFALPGDDLS
CHSINVGSKPILSLNKGLTTGMSIIESLHHFKEEGGGEGLILRVNDLEDCMGTKGYTPLS
EAQAPADSLSSLFYLEEQLQGSYSWDYLLDWEPRFQALASVFTDISMLPDEELQGGHEDL
AAETNCLIYPPPLITGVAQPGIRTVPSRRPRRMPSLSRKPSFPKYAYSPLARNTGLTPSA
MTPTFSPSLSSLTVRTPNASPVVSDAGVGGIRXDSGPLTASLLEPDIQV
NT seq
9870 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgccggagcgcgttgttcttgctggtcctggcactgctttgcgcacagtctctc
ggacaggtgttcaacctgtcgctctctgtaaaagagggtctgcctgctaagaccatcgta
ggagatctgggtgcagttttaactagacccagcaccgggttcttcatctcagagagcaga
gactcgtacgtgttcagagacctggagatagacgcagacaggggcatcatctccacagct
gtggtcctggacagggagcgcagggaccagtatgagttcgtggcagccaccctcacaggg
gagatgatcagtgtgaggatagaggtggatgatgtgaatgaccactcacctgtgtttccc
actgatgaggtgctgttggagatatcagaattaagcccaccagggagccggtttcagatt
gaaggtgccaaggaccaggataagggggagtttggtactcaggggtacaggatcacagag
gctgagatgagtgagctcttccagctggattaccgcagtggatctgaaaaccagcatggc
ttggatctcattctgaagaggaaagttgacagagaaacacaggacttctaccttctaaca
atagaggcctttgatgggggggtcccagtgaagacagggaccctgcaggtgaaagtccac
atcctggatgagaacgacaaccctcccgtgttcaaccagactgagtaccacacctcagtg
ggcgaggatgcttccactgggtctatyatctgtcaagtgcacgcatctgaccgtgacctg
ggagacagyggcagaatcacctatgagatcaaccggcggcagagtgaccccaactatgtg
ttctccattaacggaaccaccggattggttcatctaaacaagcggctcgatttcgaggcc
cagccattccacgagctgatcgtcagcgccagagacaacggagctcagcctgagttcagc
agtgccttcgtgggcatcagggtgctgaatgtcaacgacaacagccccaccatcagcgtg
ctgttcctcagtgagacaggagacgctgtggtgtccgaggcagcagccgttggagattat
gttgctcggatctctgtgtcagacccggactttgaagacgagaaggtcactgtcactctg
gagggaggggatgggaagttcaccctgaagcaaactgatgatttcctgtacgccttgtgt
gttaactcagagctggacagggaagagaaggacctctatgagctgaaggtccaagcatct
gatttaggaaatcctccactgagcagtgaggaggtcttcttactgaaagtgaccgacacc
aacgactgccacccagttttcgacaaggacgtttacatcataagcatccccgaagatgct
cccgtggggagttccctcatccagattcaggcccgggacgcagacgaaggtggcaactca
gacgtcagatactccatcatgaagtcacagcagagcgacctgatcagcatcgactccgag
tcgggcctgatcaccactgctgcagctttggacagagagaagcaggtggaggtgtggttc
ctggtcctggcagcagatcgaggggatccggcgctgtcctccacggctacggtcacggtg
ctggtggaggacatcaacgacaacgagccggtgttccagcagcagctgtacaacgtgtcc
ctaccagagcacagcgatgttgggagctgcttcttgcaagtcgtagccacagacgcagac
agcccagagttcagtgctgtcctctactcattgtctgatggctttgacaatcaggaaaaa
caccctctcttccaaatccatccacacaccggagagctgtgtgtctcccaggacatcgat
cgagactcaggacagactgtccatgacatagtggtcaaagctgaagaccccggaggcctg
agcgctcagacgtacgttcatatagagatagaagacgtgaacgacaaccctccrgtgttc
agccctgaggagtacacagtgagcatcagcagccacgctcctcctggaacagaacttggt
aatgtcgtcgccaccgaccgagacgccggcagatttggacagatcacctaccacattcac
cctggagacgtgtctgatttgtttgcactggataaacaaacaggaacacttttcctgaac
tcctctctaacccacctgggtgcagccagcatgaagctcttcatcaccgcacaggatgaa
gagggcttgacctcaccccggcctgcagaggtcactgttaatattttacraagctctcag
gctccagcagtgtttgaggtcccgnnctacaccttcacagtgcctgaggacgcacctgtt
gggacatctgtggggacggtggtggccagtaacccaaccgactccgctggatcagtgtct
taccgactttcttctggagaccctcatgctttgttctccgtacatcccaagtctggtctt
atcagcagcatcaagcctctggaccacgagtctcagccgttcgttctgctggtccttcag
tcctacactgacacgtctcctgtttacagcaccacgcagatcaacatcaccgtagatgac
gtcaacgacaatgcccccatctttgccaaaaggagcaacgccatcactgtgtcccaaaac
actcaacctggaatggtgctgttcatcgcccatgcacatgaccatgacagcggcgccaat
gggagggtgcagtattacctgaaaagtagccaaaatggtacctttgcgattgatgccaac
ctcggaacagttacactgaaccagactttgggggtcagacatccacgatggtacaacctg
gaaatcgtagctaaagatgaaggagaacctcccctgagctccmcgctaaccctctctgtt
tatgtagaccagactgctgcagaagaaagcctgtcctttgagacgttggtctaccaggtg
gagataggtgagagtcaccgaagagactcacgggtcatccaagtgagggcgcaccggacc
caaagagctcacacatcaaactcaggccttgtctactctttagaagcagagcccgggttc
actttgcctccttttcgcattcacccaaaaactggatggttgtatttgtcccgcagtctc
gactacgagacagagtcaagttatcgatttcaggttttagccacatccaaggaggcctct
gtggcaaacatcactgcaacagcaactgtgacggtacaagttctggacgtcaatgataat
gctccagtgttcagcagcgaggtgtactacttcaccgtctgtgagggatcgtcgccgcaa
ggcctcatagggagagtgacagccatcgataaggattctgggaagaacagccagctgtcc
tacatcctactctcagatgggaaattctttcgcatcaatgctaaaacgggtgaaatcatc
aactgggtggcgctggaccgagagcagcacagtcagcacagtgtgaaggtgatggtgaca
gaccagggtcgccctcggctaaacgccaccgccactgttcacatcctgatcactgatgtc
aatgacaatgctccgcagttcacacatctgcctgcaagcaaagagctgagcgttcacatt
tgggctggtgtacctgcaggattcctggtgatgaacatgtttgccaaagatttggatgct
ggagagaatggaactgtaacccattctctgataacagttggtttaacagacgaacacttt
gagattgacagcgaaactggagacataagatcaacacatcttttcatccaaaccactgaa
actttctacactctgaggataactgccagagacagaggagccacaccccaggaggaaaca
gcagtgcttcacgttcaggtgtatgggttagaggatctgtacagcagctctgaccaccmg
gcactcagacatttctctgtgagggaggatgcagatcctgcaactataatcggctccgcc
tctgtttcagaagaaggccggttccagtacagcattgctgagggtgatgggagtgtttac
tttggaatcgacgccacctccggtgagatttacgttaaccagccgctggactatgagtct
gccatgcagtacttcctcataatccgagctgaagacgtcggccctgctcctggagtgaat
gtgtccgtgttggtcagcgtggcggtggaggatgtgaatgaccacaccccctggttccct
gaaaagctgctgatgttcgggctgagggaagacgctgtggtcggatccctggcctttgct
tttcacgccagagacgctgacggcacttaccctaacagtgccctcttctactctctgacc
tttgaccctgaaattagtgggtcaccgtcacacctcccctttcacctgaacccacggacg
ggcagcctgaccgtggtggcaccgttggaccgggagagcaccccctcttttgtttttgcg
gtgacggccacggaccaggcagagaggctggatgagcgtaaacagacggcggtgacagtt
cagctcttcctgctggacgtaaacgacaaccgtccggtgtttgtgtccgctgacagagtc
cagctgatggaggacacagaagtggggagtctggtgcatcattttgcagctatagatggg
gatcaaggtgaaaacggggaggtgtctttctccattatggctggaaacaaaaaaggcctc
tttacactggaggagaaaacaggccttttgtttctctccacacccttggactacgagacc
cggcgtgtccaccgtctgaccgtccgtgcggtggatcacggcctcccctcactgtcctcc
acccagactctgaccgtagaggtgggggatgtgaatgaccacccacctgtcttcagtcag
accacctataacaccagtgtggcagagaacagagaccctggagaaactgtggtcagggtt
tctgccactgacatggactcagaggagaactctgtggtgtggtacagtcttctgccgggt
cctggctatgagttcttcagcatcaacccatacaccggcctcatcaccaccacctcccac
ctggacagagaaaaacatcaacattttatactcagagtggaggctcgggacagcggcgct
cggcctttctcggggacagccgtagttttgtgttctgtgctggatgataatgacaatcca
ccagagtttatgcagtcatcattacagatccgcctgccagaaaacctccctcctggagtt
atacacacagttcaggcctctgacccagaccacggagaaaatggcaccatacactactcc
atawtaggtaaggagcctatatgtggctcagtatcccaagctctgattccatttaatcca
tcacagtcacttaatccctgttcactgcctccaggtgaggaccacagaggtcgattcacc
atcgacagtcacagtggttctatcagtaccatacagattcttgaccgagaggaagcacag
aattacactctcaccattcaggcccaggattatggtccaacctcactcagctccaccacc
cagctcyatctggtgctgctggaccaaaacgataatgtccccacatttagcattgagagc
taccacgcctccatcagcgaaggtttaccggctggagctgaggtcctaagtcttagtgcc
twtgaccccgacgatgggcccaatggkgatgtracctactcgctgaccgaagacagcagc
cacggggctttctctgtggacctctacaccggactgatccgcaccaccaggtctctggac
agagaaagtgtttctcartacaccctcagagctgtggccacagacagctgcgctcaggga
ccgctgagctctgtggcatctgtcaccgtacaggtggaggacgtgaacgacaacccgcca
gtctgtgaccagaatcccttcaacgcttgggtttccacgagaactccaccaaaccagata
gttaccacggtggtggcaacagatggcgaccagggcgagaacgggacaatgcagtttgtg
ttgtctgatgrggaaaacttgtttgacgtcaacacaaattcaggggagatttcactgaga
agacgagtaagagcaggttttactgggaaaaagttgcaggtgttggtttcagaccgaggc
catccctccctgacctccacctgcttggttttcatccacctgaagggagaacatgatgga
cttcagttcacaaacaaagtctacaatgttactgtcgaggaaaacagcagagcaggcacc
ttggtcgcaaaagtagaggccaacgatgaaacaaacagcagacaaagaatcacgtacacc
atatttagtggcaacgagaatcttgttttctccatgaatcrtcacacaggtgagattcga
gtgcagaaagaccacatcctggactttgaagtgagccctcagatccagctggttgtactg
gctgacagtggaacgcagacagctcactgcagggtttccatcaccctgctggatgtcaac
gacaactcaccacagtttgaacacagcagctacagaacatcagtttgggaggggcaagta
cgcaacacctacatcatgcaggtgtttgcgtctgacactgacagcggtgtgaacggacag
attgaatactccatcctgtctggtaacactaacgaagcattcgttttggattctatgaga
ggcattcttgccaccaacgtcttactggaccgagagatcacttcctcwtacaagttgatt
ctacaagcaacagacaagggcaaacaacctctcagcagcaccaccaatgttagggtccaa
gtggtggacatcaatgacaacagccccgtcattccccccatgaagcccgtgtttatagct
gaaaatctaccagcagggtatctggtcactcaggtggctgcgaatgacgtggacctgagc
tcaaccatcacctacagcttttcagacaacagcagtaccagccatccctttgcaatcgat
cgctacactggagccattaccctgacgcaagctctagactttgaaataaagtcagaatat
agtctgacagtgtgggcgtccgactcgctccatcagaccacgggagaggttaaagttcaa
gtgtttgatgccaatgacaacgctcctgtcttcacacaggcttcttatcaggtggagctg
tcagagctggtcacagaagatacgttagttgtggctcttgctgctacagacgaggattca
ggactcaatggcaatatcagctacacattgctctcatctcctcttcaaggcttctacatc
cagccagactctggtgctgttttcaccagtaagcccttgaaggacttggcaaacagcaac
ccgatccatcttctggttgaggcaagagatggaggcgatcctgttctatccactgtcact
tctgtcagcatcaagattctggacaacaatgaccatgagcctttgtttctcaaggacgtc
tacgctctttctgtccctgaagacacgcccactgagaccacccttcttactttgtctgca
gaggacaaagactggagccctgaaaatacccatctggactatgacatcatcagcggaaac
gagagaaaacgattttgtttggaagtgaaaatgatactaattgacaatcgaatgtcgaat
gtagcaaagcttgttctgtgccaacctttagaccgtgaaacaactgagagctatgtacta
acggttactgtttctgacagaggaacgcctccactgaacagctcagcggtcatcaaggtg
atcgttacagacttcaatgataaccctcctgttttctccagcacagagtaccacacgcaa
gtaagtgaaaacagccagataggtaccagtgtggtccaggtcactgctcaggatcctgat
ctgggaatcaacggccttgtgcgatacagcattgtttctgggaatgataaaaaccacttc
aaactagactaccagacaggccttttgttggtcaaccattcccttgactatgagcaggac
ttaaaatacgtcttgaccatcagagcagccgatggaggcgaagcatctgaaaactctaaa
gtggcctttactgttgtcttcattgaagtcttagatgagaatgacaacacaccatacttc
atgttccctacaatgaactgttccgtgctggaaaacctcccagcttttactcatgcgtgt
tctgttcatgctgttgacaaggatttaggcccctacggcaagctcacctattctattctg
tcctcttgcttcatggactacggaagtggcagcccagagaggaaggaggcttttgccatt
gaccccctcacaggaggtatccacaccagacaaacatttgattacgaacgggaaagtgag
tactgctttgtagtagaggccagagacaaaggggacaaaacagcaagagtgagagtgcag
atgagcattaagggagtggatgagtttagtcctatttttactcagaagcagtacaacttc
cttcttccagaaaacatcaaaactggagatacagttggttttgtgatggcgatggaccat
gatggaggggtggacggactagtagagtactctctcctgaattcatcgccgtttttctca
attaacaaaacgattggtgccatctttgtgtccgatcctataaatcgcaggggaggtagc
tatgccaacaaggacacagtggaactgactgtgtctgcaggaagtcccaaactgggctcc
aggactacaacttgccttgtttttataaatatctccagctcagctgaagcacttgtcggg
gttcatcttgaatcacacatgcttagtttgagtctcgcactgctcttgttcctttttgtc
cttgtcatctttgtgggtttggttttcaaatttaaagttaaagaagccacccttggaaag
gcagctgcagttgttccacacttgaaccatagtactggctcatttgatgaatccaatggc
caaatgcagagagctatagctttgcaagatttaccacagtgtagaatcttggttacaaag
agggacaacgtaaactcatacaatcactcagactccagtggtcgtggatcagcagaggga
gagacagctgaagatcaggaaatcaaatggatcaatgagtacccttgccacaaagaagac
acatttgagaaacatgccacagaaattcctaactttgcattaccaggagatgatctttcc
tgccactctataaatgttggatcaaaacccattctatcgcttaataaaggtttaaccaca
ggaatgtccatcatagaaagtctccaccatttcaaagaggagggaggaggggagggttta
atacttagagtgaatgatttagaggactgcatggggactaaaggatacaccccactctct
gaagcccaagcccctgcagactctctgtcttcattgttttacctcgaggagcagctacag
ggcagctacagctgggactaccttttagactgggagccacgcttccaagctctggcttca
gtcttcaccgatattagtatgctccctgatgaggagcttcaaggtggccacgaggactta
gcagcagagacaaactgtctgatatacccacctcctctaataactggagtggcacagcct
ggcattaggactgttccttcaagaaggccaagacgaatgccaagcctgagcaggaagccc
tccttccccaaatatgcttattcgcccttagccaggaatacaggacttaccccatcggct
atgacgcccactttctccccatcactgtcctctctcactgtcaggacccccaaygcctca
ccagttgtctcagatgctggggtgggagggatcagasttgactcaggacccctcactgca
agtcttttggagcctgacattcaagtataa
DBGET
integrated database retrieval system
