KEGG   Austrofundulus limnaeus (annual killifish): 106526958
Entry
106526958         CDS       T06063                                 
Symbol
cstf1
Name
(RefSeq) cleavage stimulation factor subunit 1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106526958 (cstf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:alim03019]
    106526958 (cstf1)
Messenger RNA biogenesis [BR:alim03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     106526958 (cstf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd WD40_Gbeta CSTF1_dimer Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_Aladin NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_SCAP WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_NWD2_C Ge1_WD40 Beta-prop_Vps41 PROPPIN Beta-prop_DCAF12 Beta-prop_SPT8 Beta-prop_WDR11_1st DUF7099 Frtz VPS8_N
Other DBs
NCBI-GeneID: 106526958
NCBI-ProteinID: XP_013877155
UniProt: A0A2I4CAY7
LinkDB
Position
Unknown
AA seq 431 aa
MFRPKPTLKDRQHLYKLIISQLLYDGYTSIANSLVNEVKPQSVVSPSEQLMQLAKIGMEN
DDSTVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFLLVGTQHPT
LRLYDTNTFQCFVSCNPMDQHTDTISSVSYNPSANSYVSCSKDGSIKLWDGVSNRCVSTF
EKAHDGAEVCSAIFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRTAERKNLLSLGHNNIVRAIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtttcggcccaaaccgactctgaaggaccggcagcacctgtacaaactcatcatcagc
cagctgctctatgatggatacaccagcatcgccaacagcctcgtgaatgaggtgaagccc
cagagcgtggtgtccccatccgagcagctcatgcagctggcaaagatagggatggagaat
gatgacagtactgttcagtatgctattggacgctcagacacagtggccccaggcgttggc
attgatctggagtttgatgcagaygtgcagaccatgtccccagaggcttcagagtacgag
acctgctacgtgacgtctcacaagggcccgtgccgcgtggccacgtacagccgggacggg
cagctcattgccactggttctgctgacgcctccatcaagattctggatacggagcgcatg
ctggctaaaagtgccatgcccatagaggtgatgatgaatgaaacggcgcagcagaacatg
gagaaccacccygtgattcggaccctctacgaccacgttgatgaagtcacctgtctggcc
ttccatcccactgaacagatcctggcctctggctccagagactacaccttgaaactgttt
gattattcaaagccctcwgcaaagagagcctttaagtacatccaggaagcagaaatgctg
cgttcgatctccttccacccctctggtgattttttgctggtgggaacacagcaccccacc
ctacgtctctacgacaccaataccttccagtgctttgtgtcctgcaacccgatggatcaa
cacaccgacaccatcagcagcgtcagctacaacccatctgctaacagctacgtcagctgc
agcaaggacgggagcatcaaactgtgggacggtgtctccaaccgctgtgtgtccacattc
gagaaggcacacgatggagcagaggtctgctccgctatcttctccaagaactccaagtac
attttgtccagtggaaaagactctgtggtgaaactctgggagatttctacaggccggaca
ctggtgaagtacacaggtgcgggtctgagtggccgtcagatgcatcgtactcagggtgtg
ttcaaccacacagaggactacgtgctgctgcctgatgagcgcaccatcagcctctgctgc
tgggactcaagaacggctgagaggaagaacctactgtctctgggccacaacaacattgtc
cgtgccattgtccactctcctactaaccctggcttcatgacgtgtagtgatgacttcagg
gcccgcttctggtatcgtcgcaccaccacagactga

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