Austrofundulus limnaeus (annual killifish): 106528719
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Entry
106528719 CDS
T06063
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106528719 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106528719 (cnot1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106528719 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106528719 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
106528719
NCBI-ProteinID:
XP_013879410
UniProt:
A0A2I4CHE5
LinkDB
All DBs
Position
Unknown
AA seq
2391 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGTSGVGQDQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIIIQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHIVVYSIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYDQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLTTMLTCLKSCAG
SVSQELSETILTMAANCNNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDHLTGMSSL
SLGGTASSHTQSMQSFQTSLSSALSNPLSPAKAFPPLPNPNPSTPFGGINISSQLPGMDS
GPLGSAIGSNSGFSLGMPTVSADPFGTRKISTPGLNPPTFQQSKMKASDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQ
VQAQTQSQQPASLKPPQPGQPSTLVTTTTTTTTAAKTSTITRPTPSTFKKDMPPSINTTN
IDTLLVATDQTERIVEPPDTVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYL
VMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLSETYRNIKVLLTSDKAAANFSDRSLLKN
LGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRP
QNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINELKPGNLLKDKDKLKNLDE
QLSAPKKETKPPEELLPVSTTGDFVPFAAPTSTPAATTTTCTTTGPPTPQFSYHDINVYS
LAGLAPHININVNVPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRK
DFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQRE
MMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVL
TYQAERMPEQIRLKVGGVDPKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKNQAWAT
DDVAQIYDKCIADLEQHLHAIPPALAMNPLTQGLRSLLEAVALARNSRDGIAALGLLQKA
VEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNV
EAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADLF
QTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDP
PGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEM
CVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNK
VLGIVVGVLIQDHDVRQTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHI
LRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELI
KPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDP
FTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNE
PGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYL
FLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7176 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctatttggtggataattta
acaaagaaaaactaccgagccagccaacaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagactttcaccagacacagtttctgatccaagagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctgtgttatgccattgacaaccctctgcac
tatcagaagagtttgaagccatctactcatctttttactcaactgagtaaagttcttaaa
ctcagtaaggtccaagaggtgatatttggccttgctttacttaactccagcaacactgac
cttcgtggttttgctgcacagttcatcaagcagaaacttccggacctactgcgttcatac
gttgacgcggatctcgggggaaaccaagaaggtggcttccaggacattgccatagaggtg
ttgcacctgctgctttctcatctgctgtttggacagaagggaaccagtggggtggggcag
gaccaaatcgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagcaaagaccatcatggagagttctcttgcagacttcatccaa
gaagttggctatggcttctgtgctagtctggatgaatgcagaaacataatcatccaatat
ggggtgagagaggtgacagccagtcaggtagccagggtcctgggaatgatggctcggacc
cactcaggtctatctgatggtatcccactgcagtccatctctgctccaggaagtggtatc
tggagcgatggtaaggataagaatgatggttcccaggcccacacctggaatgttgaggtt
cttatcgacgtcgtcaaagaagtgaatcccaacttgaacttcaaagaggtgacgtatgaa
ctggaccacccaggctttataatccgggacagtaaaggccttcacatagtggtgtacagt
atccagagagggctgggcctggaagtctttcctgttgacctcatctatcgaccatggaaa
catgctgaaggacagttgtcatttattcagcactccctgatgaacccagatgtgttctgc
tttgctgactatccttgtcacactgtggccatcgacatcctcaaagccccaccagaagat
gataacagagagattgccacatggaaaagtctcgacctggtggaaagccttctgagactc
tctgaggtgggacagtacgaccaggtgaagcagcttttcagcttccccatcaagcactgc
ccagacatgttggtgctggcactgctgcagatctccacatcctggcacacactgcgccat
gagctcatctctaccctaatgcctatcttcctgggcaaccatcccaactctgccattatt
ctgcactatgcctggcatggacagggccagtctccctccattcgtcagctaattatgcat
tcaatggctgagtggtatatgagaggagagcagtatgatcaggctaagctgtctcgcatc
ctggatgtggcccaggacttaaagtctctttctatgctgctgaatggtactccatttgcc
tttgtcattgacctcgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgacagacaaaatcagagagcatggggagccttttatccaggcctgcgtgacattcctt
aagaggcgctgcccgtccattatggggggtctggctccggacaaggaccagcccaaaagt
gcccagctgcccccagagacgttaaccaccatgctgacctgtttgaagtcctgtgctggg
agtgtgtcccaggagttgtcagagaccatcctaaccatggctgccaactgtaataatgtc
atgaataaagctcggcagccaccaccaggagtcatgcccaaaggacgggccccaagtact
agcagcttggatgccatctcacctgtacagatggaccatctgaccggtatgagctccttg
agcctggggggaacagcttcctctcacactcagagcatgcagagcttccagacttcactg
agttcagctctcagtaaccccctgtcccctgcaaaagccttcccaccactccctaaccct
aatcccagcacaccattcgggggtattaatatcagctcgcagctccctggtatggactct
ggtccattgggctcagctattggatcgaacagtggctttagtctgggaatgccaacagta
agcgctgatccatttggtaccaggaagataagcacaccgggcttgaacccgcctaccttt
cagcagagtaagatgaaggcctctgatctttctcaggtgtggcctgaagcaaaccagcac
tttagcaaggagattgatgatgaagcaaacagctacttccagcgaatctacaaccaccca
cctcacccaactatgtctgtagatgaagtactggagatgcttcaaaggttcaaggactca
acaatcaagcgggaacgagaagtattcaactgcatgcttcgaaacttgtttgaggagtac
agatttttcccccagtacccagacaaggagctgcacatcactgcctgcctctttggtggt
attattgaaaagggtcttgtgacctacatggccctgggtctggccctgcgatatgttctt
gaagccttacggaaaccttacggatcaaaaatgtattactttggaattgctgccctagat
aggttcaaaaacagacttaaggattatcctcagtattgtcaacacctggcctcaattgct
cactttttgcagtttcctcaccatttacaagagtatatagagtatggacaacagtcccgg
gaccctccagtgaaaatgcagggctctatcaccacacctggaagcctggctctggcccag
gttcaagcccagacccagtcccagcagccggccagcctcaaacccccacagccaggccag
cccagcaccctggtcaccaccaccaccaccacaaccacagcagccaaaaccagcaccatc
acaagacccacacccagcacctttaagaaggacatgcctccttccattaacacgaccaac
attgacaccctgttggtggccactgatcaaacagaaaggattgtagaacccccagacacc
gttcaggagaaaatagctttcatctttaataacctttctcagtccaacatgacacaaaag
gttgaggagttaaaggagactgtgaaggaagagttcatgccatgggtatctcagtacctg
gtgatgaaacgtgtcagcattgaacctaacttccacagtctctattccaactttttggac
actctcaagaacccagagtttgtcaagatggttctcagtgaaacttacagaaatatcaag
gtgcttctgacgtcagacaaggcagctgctaacttctctgatcgctccctgctgaagaac
ctgggccactggttaggcatgataactctggccaaaaacaagcccattctttatacagat
ttggagcttaaatctctgctgctggaagcgtatgtgaaaggccagcaggagcttctttat
gtagttccctttgtggccaaagtcttggagtctagtctgcgtagcatggttttcagacct
cagaatccttggactatggccatcatgaatgttcttgctgagctacatcaagaacatgac
ctgaagttgaacctgaagtttgagattgaagttctgtgtaagaacttatctctggatatc
aacgagctgaagccaggaaacctgctgaaagacaaagacaagctgaagaacctggacgag
cagctgtcagcaccaaagaaagaaaccaaacctccagaggagttgctgccagtttctact
acaggagactttgttccatttgcagccccaacctcaactccagctgcaaccaccaccacg
tgcactaccaccggacccccaacaccacagttcagttaccatgacatcaatgtgtactcc
ctggctggcctggcaccacacatcaacataaatgttaatgtccctctgctgcaggctcat
cctcagctgaagcaatgcgtgcgtcagtcagtggagagggcggtccaggagctcgtgcat
cctgtggtggatcgttccatcaagattgcaatgacaacctgtgaacaaatcatcaggaaa
gatttcgccctggattctgaggagtcccgcatgcgtgtagctgcacatcacatgatgagg
aatctgactgctggtatggccatgatcacatgtcgtgagcctctgttgatgagcatcgcc
accaatttgaagaacagctttgctgctgcactcagggcaccgaccccccagcagagagag
atgatggaagaggctgctgccagaattgcccaggacaactgtgagttagcttgctgtttc
attcagaaaacagctgtggagaaggctggccctgaaatggacaagagactagccacggag
tttgaactgagaaagcacgctcgccaagagggccgccgctactgtgaccctgttgttctg
acataccaagctgaacgaatgcctgaacagatcagactcaaggttggaggggtggacccc
aaacagctggctgtttatgaggagtttgccaggaacatcccaggtttcttaccaagcaat
gatctgtctcaacccactggctttttggctcagcccatgaagaaccaagcatgggccact
gatgatgtggctcagatctatgataagtgcatagcagacttggagcagcatcttcatgcc
attcctccagcacttgccatgaaccctctgacccagggtctgcgtagtttgctggaagct
gtggctttagccaggaactccagggatggcatcgctgcactcggcctcctgcagaaggct
gtggaaggtcttcttgatgctacaagtggagctgatgctgacctgcttctgcgctacaga
gagtgccacctgctggtgctgaaagccctgcaggatgggcgtgcttatggaccacagtgg
tgcaataagcagatcaccaggtgtctgattgaatgtcgtgatgaatacaaatacaatgtg
gaggcagtggagcttctgataaggaaccaccttgttaacatgcagcagtatgatgttcac
ctggcacagtctatggagaatggcctgcactacatggccgtagcatttgccatgcagttg
gtgaagctgctgctggtggacgaacgcagcgtgagccacgtcacagaagctgacctcttc
caaacaattgagaccctgatgaggacctgtgctcactctagagccaatgcaccagagggg
ctgccccagctgatggacgttgttcgctccaactacgaggccatgattgaccgagctcac
ggtggacccaacttcatgatgcactctgggatttcacaggcttcagaatatgatgatcct
ccaggcctgagagagaaggcagagtacctcctgagggagtgggtgaacctttatcactca
gctgctgctggaagggacagcaccaaagctttctctgccttcgttggccagatgcatcag
caggggatcttgaagacagatgacctgatcacacgcttcttccgtctgtgcacagaaatg
tgtgtggagatcagctaccgtgcacaggctgaacagcagcacaacccagcagccagtgca
gccatcatcagagccaagtgttaccacaacctggatgcctttgtgaggctcatcgccctg
ctggtcaaacattctggagaggccaccaacacggtgaccaaaatcaaccttctcaacaag
gtgctggggattgtagttggtgtcctgattcaggaccatgatgttcgtcaaacagacttc
cagcagctgccgtaccaccgcatattcatcatgctgctgttggagctcaatgcccccgaa
cacgttctggagaccatcaacttccagacgctcactgccttctgcaatacgtttcacatc
ctgagacccaccaaagcccctggctttgtgtacgcctggctggagctcatctcccatcgc
atctttatcgccaggatgttggcgcacacaccacagcagaagggttggcccatgtatgca
cagctgctgattgatctctttaagtacctcgctcccttcctgaggaatgtagagctcatc
aaacctatgcaaatcctctacaagggcacgctgagggtgcttctggtcctgctccacgac
ttcccagagttcctgtgtgattatcattatggcttctgtgacgtcattccacccaactgc
atccagctgcgcaacctcatcctcagtgccttcccacgcaacatgaggcttcctgacccc
ttcacccccaacctgaaggtggacatgctgagtgagatcaacatcgctcctcgtatcctg
accaacttcaccggcgtgatgccgtctcagttcaagaaggatctggactcgtacctgaag
acacgttcacctgtcactttcctgtctgagctgcgcagtaacctgcaggtgtcaaatgaa
ccaggaaaccgttacaacatccagctgatcaacgctctagtgttgtacgtaggcacacag
gccatcgctcacatccacaacaagggcagcaccccttccatgagcaccatcactcactct
gcacacatggacatcttccagaacctggctgtggacctggacactgaggggcgatacttg
ttcctgaatgccatcgccaatcagctgcggtacccaaacagccacactcactacttcagc
tgcaccatgctgtacctgtttgctgaggccaacaccgaggccatccaggagcagatcacc
agagtcctgctggagaggctgatagtgaaccggcctcacccctgggggcttctcatcacc
ttcattgagctgatcaagaatcctgccttcaagttctggagtcatgactttgtgcactgt
gcccctgagattgaaaagctgttccagtccgtagcccagtgctgcatgggccagaagcag
gctcagcaggtgatggaaggaactggagccagttaa
DBGET
integrated database retrieval system
