Austrofundulus limnaeus (annual killifish): 106530753
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Entry
106530753 CDS
T06063
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106530753 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106530753 (sf3b1)
03036 Chromosome and associated proteins [BR:
alim03036
]
106530753 (sf3b1)
Spliceosome [BR:
alim03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106530753 (sf3b1)
Complex B
106530753 (sf3b1)
Complex C
U2 SnRNP specific factors
106530753 (sf3b1)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
106530753 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_MROH2B_C
HEAT_ECM29
HEAT_EF3_N
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Menin
Adaptin_N
UNC45-central
Motif
Other DBs
NCBI-GeneID:
106530753
NCBI-ProteinID:
XP_013881901
UniProt:
A0A2I4CPI2
LinkDB
All DBs
Position
Unknown
AA seq
1318 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMRASLVENGEQGVGVDSTGVYDFEIYGGSDSRFAGYVTSI
AANEQEDDDDVDTSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPPKIAEREDEY
KGRRRHMIISPERHDPFADGGKTPDPKLQVRSYVDVMMEQNLSKEEREIRQQLVEKAKSG
DLKAVNGAAAAQAAAQAAAKRKRRWDQTADQTPSNATPKKMSSWDQADATSETPGHTPAH
TPSNSRWDETPGRPKGSETPGATPSFCMWDPTPSHTPAGAATPGRDTPGHATPGHGGATG
SVRKNRWDETPKTERETPGHGSGWAETPRTDRGEESVGETPTPGASKRKSRWDETPASQM
GSSTPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELDA
MFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQAEDRTTKQMNDQPSGNLPF
LKPDDIQYFDKLLVEVDEATLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREF
GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDED
YYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLP
FLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISA
LAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYT
REVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALD
RRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDH
KLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAK
VRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGM
HKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELL
KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ
TASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRM
LQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNVYVRYELEYVV
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacgcacgaagatattgaggcccagatccttgagatccagggt
atgagggcctccctggtagaaaatggagagcaaggagtgggcgtggactccactggtgtt
tacgactttgagatctatggaggcagcgacagccgttttgctggatatgtcacttctatt
gctgctaatgaacaagaggatgatgatgatgtcgacacatcaacaagcttgttgggacaa
aagaaaccaggctatcatgcaccagtagcaatacttaacgccattcctcagtcagatgag
cartacgacccatttgcagagcatcgcccaccgaagatcgctgagcgagaggatgaatac
aaaggccgacgcagacatatgatcatctcacccgaacgtcacgacccttttgcagatggg
ggcaaaacgccggaccccaagcttcaggtcaggtcttacgtggacgtcatgatggagcag
aacctgtcaaaagaggagagggagattcgtcagcagttggtggaaaaggctaaatcagga
gacctaaaagctgtcaatggggccgctgctgcccaagctgccgcccaagctgctgcaaaa
cgtaagcgacgttgggaccagacagccgaccaaaccccatccaatgccacacccaaaaag
atgtccagctgggaccaggctgatgccacttctgagactccaggacacactcctgcacac
acaccctcaaacagcagatgggatgagacccctggtcgccctaaaggcagtgagacccca
ggagccacccccagtttctgtatgtgggatccaacgcccagccacacrcctgctggggct
gccacccctggtagggacacacctggccacgccacacctggtcacggtggagccacaggg
agcgttcgcaagaaccgctgggacgaaaccccaaagactgagagggagactccgggacac
ggcagtggctgggctgaaaccccacgaacagaccgaggagaggagtctgtgggcgaaacc
ccaacccccggggccagtaagaggaagtctcggtgggatgaaacccctgccagtcagatg
ggctcttcaacccccctgctgaccccaggaaagactccattaggaacaccagcaatgaac
atggccacaccaacacctggacatctgatgagcatgactccagagcagctgcaggcctgg
agatgggagagggagattgatgagaggaaccggcctcttacagatgacgagcttgacgcc
atgttcccagagggatacaaggtcttaccacctccagccggttatgttccgatccgtacc
ccagcccgtaagctgtcggccacacccacacctattggaggcatgactggcttccacatg
caggcagaggaccgcaccaccaaacagatgaacgaccagccttcaggaaatcttcccttt
cttaaacctgatgacatccagtactttgacaaactcttggttgaggtggatgaggcaacc
ctgagcccagaggaacagaaggaaaggaagatcatgaagctcttactaaagattaaaaat
ggaacaccacccatgagaaaggctgctctgcgtcaaatcacagacaaagctcgtgagttc
ggagccggtccactcttcaaccagatcctgccactgctcatgtctcccactcttgaagac
caggagcgccacctgctggtcaaagtcatcgaccgtatcctgtacaaactggacgacctg
gttcggccatacgtccacaagattctggtggtgatcgaaccgctgctcattgatgaggac
tattacgctcgagtggaaggcagagagatcatctccaacttggcaaaggctgctggcttg
gccacaatgatctctacaatgagacctgacatcgacaacatggacgagtatgtcagaaac
acaacggctcgagccttcgctgtggtggcctcggccctcggcattccctccctcctgccc
ttcctcaaagctgtgtgcaaaagcaagaagtcgtggcaagcgcgacacacaggcatcaag
atcgtacagcagattgccatcctgatgggctgcgctattctgcctcacctgcgcagtttg
gtggagattatcgaacacggtctggtggatgagcagcagaaggtgaggaccatcagtgct
ctggctatagctgccctggctgaagctgctacaccctacggtatcgagtccttcgactcg
gtgctgaagccgctctggaaaggtatcaggcagcacagaggaaagggtctggctgctttc
ctcaaagctattggttatctcatcccactgatggatgctgagtatgccaactattacacc
agagaggtgatgttgatcctcatcagggagttccagtccccygacgaggagatgaagaag
atcgtgctcaaggtggtgaaacagtgctgtggaacagatggtgtggaggcaaactacatc
aaaacggagatcctgccgcctttcttcaagcacttctggcagcacaggatggctctggat
agacgtaactacagacagctggtggacaccacagtggagctggccaacaaagtgggagca
gcagagatcatttctcgcattgttgacgatctaaaggacgaggcagagcagtacaggaag
atggtgatggagaccattgaaaagatcatggggaacctgggtgcagccgacatcgaccac
aagctggaggagcagctgatcgacggcatcctgtacgcttttcaggaacagaccacagag
gactccgtcatgctgaatggtttcggtacggttgtgaaygctcttgggaagcgtgtgaaa
ccttacctgccccagatctgcggtacggtgctgtggcgtctcaacaataagtcagctaaa
gtgcgtcagcaggcagcagacctgatctctcgcacagcagtggtgatgaagacctgtcag
gaggagaaactgatgggtcacttaggtgtggtgctgtatgagtacctgggagaggagtac
cctgaagtgctgggcagcatcctgggagcactaaaagccatcgttaacgtcatcggcatg
cacaagatgactccgcccatcaaagacctgcttcctcgtttgacacccatcttgaaaaac
agacatgagaaagttcaggaraactgcattgatctggtgggcaggattgctgacagggga
gctgaatatgtgtcggccagggagtggatgaggatttgttttgaactcctggagcttctc
aaagctcacaaaaaggccatccgcagagccacagtcaayacgtttggttacatcgccaaa
gctattgggcctcatgacgtgttggccactttgctcaacaacttgaaggttcaggagcgt
cagaacagagtttgcaccaccgtggccatcgctatcgtggctgaaacgtgttctccgttc
acggtgctgccagccctgatgaacgaatacagagtycctgaactcaacgtgcagaacggt
gtcctcaagtccctctctttcctgtttgagtacatcggagagatgggcaaggactacatc
tacgctgtcacccccctgctggaagatgcacttatggacagggacctggtccacagacag
actgccagcgctgtagtccagcacatgtctttgggtgtctatgggtttggctgcgaggac
tctctgaaccacctgttgaactacgtgtggcccaacgtgtttgagacgtcgcctcacgtc
attcaggcagtcatgggcgccctggagggtctgagggtagccattgggccctgccgcatg
ctgcagtactgcttacagggtctgttccacccagctcgcaaagtgagagacgtctactgg
aagatctacaactccatctacatcggctctcaggatgccctgatcgctcactatccacag
gtctacaacgatgagaagaacgtctacgtccgctacgagttggagtatgttgtgtaa
DBGET
integrated database retrieval system
