Anastrepha ludens (Mexican fruit fly): 128867883
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Entry
128867883 CDS
T10909
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128867883
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alud03019
]
128867883
Messenger RNA biogenesis [BR:
alud03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128867883
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128867883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_1st
CNOT1_HEAT
DUF4327
Motif
Other DBs
NCBI-GeneID:
128867883
NCBI-ProteinID:
XP_053965433
LinkDB
All DBs
Position
6:52118575..52137702
Genome browser
AA seq
2495 aa
AA seq
DB search
MNQLKFTLAQIGILVIQLNKKNFAETSESINQYIKEIGLEADRHCLRCLFSAINFTDTTS
TSPNSNYNFIVQAQAKLLGAQLENQLSRASVISNICFAVDHCFPQQKTLKPTPQLIAQIA
KLTGISKLCEVVLSIALTHSTQPDLSEYSLEHLKLSFPELIESFLENKDSTASIGSNLQD
VSIDILQIIIVYLDEFVNKKLRNQFLDILRKQFPLERSSLILAPHLYRQTTLCAKETVCC
ESTSSLEVLDAEEVYDKDTTITTADGGVASQHLTEIGIEDIYDNLCETIFTTQVNSNIMD
TSWINLILEIGYEFTSSVEECKNHLRCGSRELQSQDVAKIIGLMCRRHSSLLDCNVNLGT
PANFWPGQQGAGPGTQQQQNVANNNDGSNVTGSGVDKAANVNDKKDKVGGNAAGTTSTET
TQAWKPDAFVQALKEVVPQLNWKEVCLELDHPEFIIKDRIGLDLLLTIFRLGTQSALFPH
PECIYRHWQNVNGQLSLIAVMLKNPDLFSFSDYIFTAAPVEMLKTPPDSENKEVCAWKSL
HLVEVLLYIADQGYYPQVIELFKFPAQHSPDILFLSLLHINPPITALRQELFSQLIPTFL
TNHPNSGVVLLNAWNSANFGVVLRPIVMQAMSEWYQRGTEYDQVKLSRILDVAQDLKALS
TLLNERSFLFVIDLACLASRREYLKLEKWLSDKIREHGEPFIQAILKCLQRRCPQITNAK
IPESQLPSKQAQLPPETVTTMLQCLQACIVNVPPEIADLIMQMTANCSIMANKARAAVPP
LVPQLQGVMRGHRGMDMGGGVPGVPPPPFSANLNAQQMFGPTMDTLSNLTTNIANLNLGG
PNGAFNFGNVLGNLASTPASPSRLMNPAASPYPLNAMQIPPPNVGNLARMPPTAPQPTPT
PPNPINPGMADLQGPVSKEVEDEANSYFQRIYNHPPHPTLSIDEVLDILQRFKDSNIRRE
QEVYQCMLRNLFEEYRFFPHYPEKELQITAQLFGGIIERNLVPTCVALGLALRCVLDALR
KQDSKMYNFGITALDRFKNRLHSYNKYCEYIRSIAHFHEFPPHLIQYVECGYLQQEPPPA
KIQMLMSGSGQQAPPDSIYRSNSVTGNLVTTPTQQKPMVVAQSIHASRMKSIATATNIDT
LLVANQEEKVTIPPEPVQDKTAFIFNNLSQLNIPQKCEEIKEIMTKEYWPWLAQYLVLKR
ASLEFNFHTLYFNFLEALKNPEINKYVTKETLRNIKVLLRSDKGVVNFSDRSLLKNLGHW
LGMMTLGRNKPILQIEIDLKTLLAEAYHKGQQELLFVVPFVAKILESSNKSKVFKTPNPW
TMAIMNVLGELHQEPELKLNLKFEIEVLCKTLNIELQKLKPIVYLKDPSRSMNIEHQMSQ
PKPKNIEAPPQQQQPSQGQTPGPGQMGPNDPDPQALLMGSGSAIGGGSGGGGAGGGNVPG
GVVPSPSISNESAGQVIMQAPEPRFSFVEINIANFHLIAQHVVLSPNITFLHANPGLKHI
VLNAIERTITEWLQPVVDRSVRIAVTTTEQIVRKDFGLDPDENRMRTAAHQMVRYLSAGM
AMITCKDSLSQTLTNNIRKAFLSALTGGPGYQEIEAAALQLSNDNVELACAFIQKTAAEK
STPEIDRRMSTDFDTRKMTRDEGGRFYDTQTLAYQTERMPEQVRLKVGGIPHTQFAVYAE
FARNIPGFQPMTERDIALFLPKPQEIPPASFGTDELGLMYADLAGKMEAFLNSTINVSTL
QLQAGKMHALLNALMVTRRIRDNESALNLLTRVVEGLVEGLVNIPEHIEQMKLYRDIHLR
ILTLLQNTFGAGVTERAITKCIFDLREEVRYNVEATKLLITSHFINVPQFDLLLREAMDN
GNNYMAVTFAMTLMERLLDGRSSATLETEMTGTFEMLGRLPQNRHRYPEALTHQIDMMDA
GPFGGAERYLAGATQYMHSGMQHVRSNDCDDPPGLQEKTEFLLKDWVSIYNQSNNMSRET
KIFTSFVQKMNMYGILKTDDLITRFFRQATQICIDLVYRILNDPNNSPLQARTKIFHWMD
AFVHLIALLVRHSGESGNPTTKINLLNKVLGIVLGILLQDQELHGTAFQQLGYHRFFVML
FLELSSPDAVLESLMHSIMTAFSHTYHLLNPTLAPGFCYAWLELISHRIFIGRILAQIPQ
QKGWPLYSQLLLDLFRYLAPFLRNAELAKPVQLLYKGTLRVLLVLLHDFPEFLCDYHFGF
CDAIPPNCIQMRNIILAAFPRNMRLPDPFTPNLKVDMLAETATAPKICSNYVFNIQPANF
KKDLDSYLKARAPVTFLSELRSHLQISNEPGSRYNIPLMNALVLYVGTQAISHIRSKNFV
PNTSNIAHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCAVLHLFAEAN
SEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPIYKFWDHDFVHCAPEISREIKSF
PPYLLRLFESVARSCMVKNHPPQMNNMDGEIQEIN
NT seq
7488 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaattgaaattcacgctagcgcagattggtattttggtcatacaactgaacaag
aaaaattttgctgaaaccagtgagagcataaaccagtatattaaagagattggcttggaa
gcggaccgccattgtttgcgctgcctattctcggccatcaattttactgatacgacgtca
acaagtcccaattcgaactacaatttcatagtacaagcacaagcgaaattacttggtgct
cagttggaaaaccaactatccagagcgtctgtcatatcgaatatatgctttgccgtcgac
cattgctttcctcaacaaaagactcttaaaccgacaccgcaactcattgcgcaaatagct
aaattaacaggaataagtaaactctgtgaagtggtattgtcaatagcattaacacactca
acccaacctgatttaagtgaatactctttggaacatttgaaactttcatttcccgagctt
attgaatcatttttggaaaacaaagactctaccgcttctattggaagcaatttacaagac
gtgtccatagatatcctccaaataattatcgtttatctagacgagtttgttaacaaaaaa
ctcagaaatcaatttttggatatattacggaaacagtttccgctagagcgttcttcactc
atcttagcaccacatttatatcgtcaaacaactctttgtgctaaggagactgtatgttgt
gaatccacatcatcattggaggttttggatgcagaagaagtttatgacaaagacacaact
attacgactgcagatgggggcgttgctagccagcatttgacggaaattggcattgaagat
atctatgacaatttatgcgagacgatatttacaacacaggtgaatagtaatattatggac
acatcctggattaatttaatcctagagattggttacgaattcacatcaagcgttgaagaa
tgtaagaatcatctacgttgtggttcgcgtgaacttcaatcacaggatgtggccaagatc
attggccttatgtgccgtaggcactcctcgctacttgactgcaatgtaaatttaggaaca
cctgccaatttttggcctggtcagcagggtgctgggcccggtacgcaacaacaacaaaat
gtggccaataataatgacggcagtaacgttacgggcagcggcgttgataaagcagccaat
gtaaatgacaaaaaagacaaagtcggcggtaatgcggcgggaacaaccagcactgaaaca
acacaagcatggaaaccggatgcgtttgtgcaggcgttaaaggaggtggtgccacagctg
aattggaaggaggtgtgcttggaacttgatcacccggaatttattataaaggatagaatt
ggcctggatcttctactcaccattttccgtttgggcacacaatctgctctattcccacac
ccagaatgtatatatcgtcactggcagaacgtgaacggacagctatcgctaatagcggtt
atgctaaagaatccagatttgttttccttttccgattacatcttcactgccgcaccagtg
gagatgctaaagacaccaccggattctgaaaacaaagaagtgtgcgcttggaaatcgctg
catttagttgaagttttgctgtacattgccgatcaagggtactatccacaagtgatagaa
ttgttcaaattcccagcgcaacatagcccggatatactatttttatcattattgcacatc
aatccaccaatcactgcattacgacaggaacttttcagtcaactcataccgacgttcctt
acaaatcatccaaattcaggtgtagtcctgctaaatgcatggaattccgcaaacttcggt
gtcgttttacgtcctatcgttatgcaagccatgtcagaatggtatcagcgcggcaccgaa
tacgaccaggttaagctgtcgcgtatactcgatgtagcgcaggatttgaaagcactatcc
acgctgctcaatgaacgttcttttctatttgtaatcgatttagcgtgtttggcatcgcgt
cgtgaatacctaaaattggagaaatggttaagtgataagatacgcgagcatggtgagcct
ttcattcaagcaattttgaaatgtctacaacgtcgttgcccacaaattacaaatgctaaa
ataccggaaagtcagctgccatcaaaacaggcccagctaccacctgaaacagtgacaaca
atgttgcaatgcttacaagcctgtattgtcaatgttccaccagaaatagctgaccttata
atgcaaatgacagcaaactgctcaattatggcaaataaagcaagagctgccgtaccacca
ttagtgccacagctgcaaggtgtaatgcgtggacatcgcggaatggatatgggcggtggt
gtaccaggagttccaccaccacctttttctgctaatctgaatgcacaacaaatgtttggt
cccacaatggatacgctatcaaacttaacaacaaacatagccaatttaaatcttggtggt
ccgaatggagccttcaatttcggaaatgttttaggtaatttggcgtccaccccagcttct
ccgtcgcgtcttatgaacccagctgccagtccatatcccctcaatgcaatgcaaataccg
ccaccaaatgtcggcaatttggcacgtatgccaccaacagcaccgcagcccacgcctaca
ccacctaatcccatcaatcccggcatggccgatctgcaggggcctgtctccaaggaagtt
gaagatgaggccaattcatattttcaacgtatttacaatcatccaccacatcccactctc
tccattgacgaagtacttgatatactgcaacgtttcaaggactccaatatacgtcgtgaa
caagaagtttatcagtgcatgctacgtaatcttttcgaagaataccgctttttcccacat
tatcccgaaaaagaattacaaatcaccgcacaattatttggtggcattattgagcgtaat
ctagtgccaacatgcgtggcattaggtttggctttgcgctgtgttttggatgcattacgc
aaacaggattcgaagatgtataattttggcataacagcattggatcgtttcaaaaatcgt
cttcattcctacaacaaatactgcgaatatattcgctccattgcacattttcatgagttt
ccaccgcatttgatacagtacgtggaatgtggctatttacaacaggagccaccaccagct
aaaatacaaatgttgatgtcgggaagtggacaacaggcaccgcccgattcaatttatcgc
agcaattcagtgaccggtaacttagtaacaacaccaacacaacaaaaaccaatggttgtt
gctcagtctatacatgcttcgcgtatgaaatccatcgccaccgcaactaatatcgatacg
ttattggtcgccaatcaggaagaaaaagtcactataccacccgaaccggtgcaggacaaa
accgccttcatattcaataacttaagtcagctgaatataccgcagaaatgtgaagaaatt
aaggagatcatgactaaagaatattggccctggctggcacagtatttggtgctgaaacgc
gcttcgttggagttcaattttcatacattgtatttcaatttcttggaggcattgaagaat
cctgaaatcaataaatacgtaaccaaggagactttgcgcaacatcaaagtcttactgcgt
tctgataagggtgtggtgaatttctccgatcgcagtttgctaaaaaatctgggtcattgg
ttgggcatgatgacattgggtcgcaataaacctattctacaaattgaaatagacttgaaa
acattattagccgaggcatatcacaaaggacaacaggaattactctttgttgtgccattt
gtggcaaagattttggagtcgtcaaataagtcgaaggttttcaaaacaccaaacccctgg
acaatggctatcatgaatgtgcttggtgaattacatcaggagcctgaattgaaacttaat
ttgaagtttgaaattgaagtgctttgcaagacgttaaatattgagttgcagaaactgaag
ccaattgtctacttgaaagatccctcacgttcgatgaatatcgagcatcagatgtcgcaa
cctaaaccgaagaatatcgaggcaccgccacaacagcagcaaccgtcacaaggtcaaaca
ccgggacccggtcaaatgggtcccaacgatccagatccacaggctttgcttatgggcagt
ggtagtgctattggcggcggcagtggtggcggtggcgccggaggaggaaatgtaccaggc
ggtgtagtgccttcacctagcatcagcaacgaatcagccggacaggtcattatgcaagcg
ccagaaccgcgtttctcttttgtggaaattaatatagccaatttccatctcatcgctcaa
catgtggtactttcgccaaatattaccttcttgcatgccaatcccggcttaaagcatatt
gtgctgaatgcaattgaacgcacaatcactgaatggctgcaaccagttgtggatcgtagt
gtacgtattgctgtgacaaccacagaacaaattgttcgaaaagattttgggctcgatcca
gatgagaatcgcatgcgtacagctgcacaccagatggtgcgctatttgtcagccggtatg
gcaatgattacttgcaaggactccttatcccagacattgacaaacaatatacgtaaagct
ttcctatcggcgctgactggcggtcctggctaccaagaaatcgaagcagccgcattgcag
cttagcaatgataatgttgaactcgcttgcgcttttatacaaaagacagctgctgagaag
tcaactcctgaaatagaccgacgcatgtccaccgacttcgatacacgcaaaatgactaga
gatgaaggaggacgcttctatgacacgcaaacattggcgtatcaaacggagcgcatgcca
gaacaggttcgtttaaaagtaggcggcataccacatacacaatttgctgtgtacgcggag
ttcgcacgcaacataccaggcttccaaccgatgactgagcgtgatattgctctattcttg
cccaagcctcaggagataccacctgcttctttcggcaccgacgaattgggtctcatgtat
gccgatttagctggcaaaatggaagcatttctgaacagcacgataaatgtatccactttg
cagctgcaggctggcaaaatgcatgcgttgctaaacgcgcttatggtaacaaggcgtata
cgtgataacgaatcggcactcaaccttttgacacgcgttgtggagggcttggttgaaggt
ctggtgaacataccagagcacatcgagcaaatgaagttgtaccgggatatacatttgcgc
atattgaccttgttgcagaacacatttggtgccggagtgacagagcgcgcaattacgaaa
tgcatcttcgatttacgggaggaagtgcggtacaatgtggaagcgaccaaattgcttata
acttctcatttcatcaatgtcccacaattcgatttgttgttgcgggaagccatggataat
ggcaataattacatggcagtaacgtttgctatgacattgatggaacgtctgcttgatggt
cgctcgagcgccacattagagacagaaatgactggcacatttgagatgctgggacgtttg
ccacagaatcgtcatcgctacccagaggcgttgacccatcaaatagatatgatggatgcc
ggaccatttggcggcgctgaacgttatttggctggcgctacgcaatacatgcactcgggc
atgcaacatgtgcggtcgaacgactgcgatgatccacctggtttgcaagagaagaccgaa
tttctgctcaaggactgggtgtccatctacaatcagtctaacaatatgtcacgtgaaacc
aagatctttacctcattcgtacaaaagatgaatatgtacggaattttgaaaaccgatgat
ttgataacgcgcttcttccggcaagcaacacaaatttgcattgatttggtgtatcgcata
ctcaacgatcctaacaattcaccattgcaagcgcgcaccaaaatcttccactggatggac
gcatttgtgcatttaattgccctgctggtacgccactctggcgaatcgggtaatccaacg
acgaaaatcaacctgctgaacaaggttctgggcatcgttctaggtatactgctacaagac
caagaattgcatggcaccgcattccaacagctcggctatcatcgctttttcgtgatgcta
ttcctggagctgagctcgcccgacgcagtgctggaaagtctaatgcacagcattatgact
gcattttctcacacgtatcacctcctaaatccaacgttggcacccgggttttgttacgct
tggttagagctgatctcacatcgcatttttatcggacgtatactcgcacagataccgcaa
cagaagggatggccattgtactcacagttgctactcgatctgttccgctatttggcacca
ttcttacggaacgccgagctagcgaagcccgtacaattgctgtacaagggaacgctgcgc
gttctgctcgttctattacacgatttccctgaatttttatgcgactaccactttggcttt
tgtgatgcaataccgccaaattgtatccaaatgcgcaacataatattggctgcttttcca
cgtaatatgcgtctgcccgatcctttcacgcccaatctaaaagtggatatgttggcggag
actgccacggcgcctaaaatttgctccaactacgtattcaatatacaaccggcgaatttc
aaaaaggatctcgactcgtatctaaaagcacgcgcaccagttactttcctctcagagctg
cgctcacatttgcaaatctcaaatgaacccggttcacgttacaacattccgctgatgaat
gcgttggtgctgtatgtgggcacgcaagctatttcgcacataagaagtaaaaatttcgta
cccaatacatcaaacatcgcgcacagcgcacacatggatattttccagaatttggccgtt
gatttggataccgaaggacgctatctcttcctgaacgccatcgcaaatcagctgcgttat
ccgaatagtcatacgcactattttagctgtgcggtactacatctcttcgccgaagcgaac
tcagaggcgattcaagagcaaatcacacgtgtactacttgaacgccttattgtgaatcgt
ccacatccatggggtttgttaatcacctttatagaactgattaagaaccccatctacaag
ttctgggatcatgactttgtacattgtgccccagagatttcaagggagataaaaagtttt
cccccttatttgcttaggttattcgaatcggtggcacgttcgtgtatggtgaagaatcat
ccgccgcagatgaacaatatggatggcgaaattcaggaaatcaattaa
DBGET
integrated database retrieval system
