KEGG   Arabidopsis lyrata (lyrate rockcress): 32283132
Entry
32283132          CDS       T01578                                 
Symbol
rpoC2, B9N47_pgp086
Name
(RefSeq) RNA polymerase beta'' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    32283132 (rpoC2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aly03021]
    32283132 (rpoC2)
   03400 DNA repair and recombination proteins [BR:aly03400]
    32283132 (rpoC2)
Enzymes [BR:aly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     32283132 (rpoC2)
Transcription machinery [BR:aly03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     32283132 (rpoC2)
DNA repair and recombination proteins [BR:aly03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      32283132 (rpoC2)
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Peptidase_M23
Other DBs
NCBI-GeneID: 32283132
NCBI-ProteinID: YP_009357257
LinkDB
Position
CP
AA seq 1379 aa
MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER
IFIQTLIGRVLADDIYIGFRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC
RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG
KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ
VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS
GGSCGSSVILFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADQKKLGIS
DYSELNGNLGTSHYNFIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPHSGISVE
IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYEM
NVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVERKKKRIELKI
FSGDIHFPDKTDKISRHSGILIPPGRGKKNSKESKKFKNWIYAQRITPTKKKFFVLVRPV
ATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLN
WDQDNKNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISADHMN
PFYSISPKAGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKYHNVIN
KSIKKNTLITIKNSSGPLGTATQISNFYSFLPLLTYNKISLIKYLQLDNLKYIFQVINSY
LIDENGKIFNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENLCIAKK
EPHLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDI
TQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLV
NKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALE
EAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVI
PAGTGFNKGLVHCSRQHTNILLEKKTKNLALFEGDMRDILFYHREFCDSSISKSDFSRI
NT seq 4140 nt   +upstreamnt  +downstreamnt
atggcggaacgggccaatctggtatttcacaataaagtgatagatggaactgctattaaa
cgacttattagccgattaatagatcacttcgggatggcatatacatcacacatcctagat
caagtaaagactctgggtttccagcaagccactgctacatccatttcattaggaattgat
gatcttttaacgataccttctaagggctggcttgtccaagatgctgaacaacaaagttgg
attttggaaaaacaccatcattatgggaatgtacatgcggtagaaaaattacgccaatct
attgagatatggtatgctacaagtgaatatttgcgacaagaaatgaatcctaattttagg
atgacggaccccttcaatccagtccatatgatgtctttttcgggagctaggggaaatgca
tctcaagtacatcaattagtgggtatgagaggattaatgtcggatccccaaggacaaatg
attgatttacctattcaaagcaatttacgcgaaggactgtctttaacagaatatattatt
tcttgctatggagcccgtaaaggagttgtagatactgctgtacgcacatcagatgctgga
tatcttacgcgtcgacttgttgaagtagttcaacatattgttgtacgtagaacagattgt
ggcactatccgagggatttctgtgagtcctcgaaataaaaatcggatgatgtcagaaaga
atttttatccaaacattaattggtcgtgtcttagcagacgatatatatataggtttccga
tgtgtcgcctttcgaaatcaagatcttgggattggacttgtcaatcgattaataaccttt
ggaacacaatcaatatctattcgaactccctttacttgtcggagtacatcttggatctgt
cgattatgttatggtcggagtcccactcatggtgacctagttgaattgggggaagctgta
ggtattatcgcgggtcaatcgatcggcgaaccggggactcaactaacattaagaactttt
cataccggcggagtatttacaggaggtactgccgaacatgtacgagccccttataatgga
aaaataaaattcaatgaggatttggttcatcctacacgtacacgtcacgggcatcctgcc
tttctatgttatatagacttgtctgtaattattgagagcgaagatattatacatagcgtg
actattccaccaaaaagttttcttttagttcaaaatgatcaatatgtggaatcagaacaa
gtgattgctgagattcgcgagggaacatacacttttcattttaaagagagggttagaaaa
tatatttattctgactcagagggcgaaatgcactggagtactgatgtgtcccatgcaccc
gaatttacatatagtaatgtccacctcttaccaaaaacaagtcatttatggatattatca
ggaggttcatgtggatctagtgtaattcttttttcgatccataaagatcaagatcaaatg
aatataccctttctttccgccgaaagaaaatctatttctagcctctcagtgaataatgat
caagtgagccaaaaattttttagttccgattttgctgatcaaaaaaaattagggatttcc
gattattcagaattgaatggaaacttaggtactagtcattataatttcatatattctgct
atttttcatgagaactcggatttattagcaaaaaggcgaagaaatcgatttctcattcca
ttccaatcgattcaagagcaagagaaagaattcataccgcattcaggtatctcggttgaa
atacccataaatggtattttccgtagaaatagtatttttgctttttttgatgatcctaga
taccgaagaaagagttccggaattcttaaatatgggactctaaaggcggattcaatcatc
caaaaagaggatatgattgagtatcgaggagtccaaaaatttaagacaaaatacgaaatg
aacgtagatcgcttttttttcattcctgaggaagtgcatattttacccgaatcctctgcc
ataatggtacagaactatagtatcattggagtcgatacacgactcactttaaatataaga
agccaagtcggcgggttgatccgagtagagagaaaaaaaaaaaggattgaactcaaaata
ttttcgggggatatccattttccggacaagacagataaaatatcccgacacagtggcatc
ttgataccgccaggaagaggaaaaaaaaactcgaaggaatccaaaaaatttaaaaattgg
atttatgcccaacggatcacaccaaccaagaaaaagttttttgttttggtgcggcccgta
gccacctatgagatagcggacagtataaatttggcaacactcttcccacaagatctcttt
cgggaaaaggataatattcaacttcgagttttcaactatatcctttatggaaatggcaaa
cccactcgaggaatttctgacacaagtattcaattagttcgaacttgtttagtcttgaat
tgggaccaagacaacaaaaattcttccctcgaggaggtccgggctttctttgttgaagta
agtacaaagggtttgattcaagatttcataagaattggcttagtgaaatcccatatttca
tatataagaaaaaggaataattcgccagattcgggattgatctctgcagatcacatgaat
ccgttttattcgatttcgcccaaggctggcattcttcaacaatcacttagacaaaatcac
ggaactattcgtatgttcttaaatcgaaataaggaatcccaatctttgttaattttatca
tcatctaattgttttagaatgggtccatttaatcatgtaaaatatcacaatgtgataaac
aaatcaataaaaaaaaatactctaattacaattaaaaattcgtcgggccccttaggaaca
gctacccaaatttcaaatttttattcgtttttgcctttactaacttataataagatctct
ttaattaaatatttgcaacttgataacttaaaatatatttttcaagtaattaactcttat
ttaatcgatgaaaacggaaaaatttttaatctcgacccatacagtaacgttgttttgaat
ccattcaaattgaattggtattttcttcatcaaaattatcatcataattattgtgaggaa
acgtccacaataattagtcttggacaatttttttgtgaaaatttatgtatagccaaaaaa
gaaccgcacctaaaatcgggtcaagttttaattgttcaaagggattctgtagtaataaga
tctgcgaagccctatttggctactccgggagcaaaagttcatgggcattacagagaaatt
ctttacgaaggggatacattagttacatttatatatgaaaaatcgagatccggtgatata
acacaaggtcttccaaaagtagaacaagttttagaagtccgctcgattgattcaatatcg
ctgaacttagaaaagcggattaagggttggaacaagtgtataacaagaattcttggaatt
ccttggggattcttgattggtgctgagctaactatagtgcaaagtcgtatttctttggtt
aataagattcaaaaggtttatcgatcccagggggtgcagattcataataggcatatcgaa
attattgtacgtcaaataacatcaaaagttttggtttccgaagagggaatgtctaatgtt
tttttacctggagaacttattggattgttacgagcagaacgaacggggcgtgctttagaa
gaagcaatctgttatcgagccgttttattaggaataactcgagcatctttgaatactcaa
agttttatatccgaagcaagttttcaagaaactgctcgagttttagcaaaagccgctctt
cggggtcgtatcgattggttgaaaggcctgaaagaaaatgttgttttagggggggtgatc
cccgccgggaccggattcaacaaaggattggtgcattgttcacggcaacataccaacatt
cttttggaaaaaaaaacaaagaatttagctttattcgagggagatatgagagatatttta
ttctaccacagggaattttgtgactcttctatttccaaatctgacttttctaggatttaa

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