Arabidopsis lyrata (lyrate rockcress): 32283132
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Entry
32283132 CDS
T01578
Symbol
rpoC2, B9N47_pgp086
Name
(RefSeq) RNA polymerase beta'' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
32283132 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
32283132 (rpoC2)
03400 DNA repair and recombination proteins [BR:
aly03400
]
32283132 (rpoC2)
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
32283132 (rpoC2)
Transcription machinery [BR:
aly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
32283132 (rpoC2)
DNA repair and recombination proteins [BR:
aly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
32283132 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Peptidase_M23
Motif
Other DBs
NCBI-GeneID:
32283132
NCBI-ProteinID:
YP_009357257
LinkDB
All DBs
Position
CP
AA seq
1379 aa
AA seq
DB search
MAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGID
DLLTIPSKGWLVQDAEQQSWILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFR
MTDPFNPVHMMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYII
SCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPRNKNRMMSER
IFIQTLIGRVLADDIYIGFRCVAFRNQDLGIGLVNRLITFGTQSISIRTPFTCRSTSWIC
RLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPYNG
KIKFNEDLVHPTRTRHGHPAFLCYIDLSVIIESEDIIHSVTIPPKSFLLVQNDQYVESEQ
VIAEIREGTYTFHFKERVRKYIYSDSEGEMHWSTDVSHAPEFTYSNVHLLPKTSHLWILS
GGSCGSSVILFSIHKDQDQMNIPFLSAERKSISSLSVNNDQVSQKFFSSDFADQKKLGIS
DYSELNGNLGTSHYNFIYSAIFHENSDLLAKRRRNRFLIPFQSIQEQEKEFIPHSGISVE
IPINGIFRRNSIFAFFDDPRYRRKSSGILKYGTLKADSIIQKEDMIEYRGVQKFKTKYEM
NVDRFFFIPEEVHILPESSAIMVQNYSIIGVDTRLTLNIRSQVGGLIRVERKKKRIELKI
FSGDIHFPDKTDKISRHSGILIPPGRGKKNSKESKKFKNWIYAQRITPTKKKFFVLVRPV
ATYEIADSINLATLFPQDLFREKDNIQLRVFNYILYGNGKPTRGISDTSIQLVRTCLVLN
WDQDNKNSSLEEVRAFFVEVSTKGLIQDFIRIGLVKSHISYIRKRNNSPDSGLISADHMN
PFYSISPKAGILQQSLRQNHGTIRMFLNRNKESQSLLILSSSNCFRMGPFNHVKYHNVIN
KSIKKNTLITIKNSSGPLGTATQISNFYSFLPLLTYNKISLIKYLQLDNLKYIFQVINSY
LIDENGKIFNLDPYSNVVLNPFKLNWYFLHQNYHHNYCEETSTIISLGQFFCENLCIAKK
EPHLKSGQVLIVQRDSVVIRSAKPYLATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDI
TQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLV
NKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALE
EAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVI
PAGTGFNKGLVHCSRQHTNILLEKKTKNLALFEGDMRDILFYHREFCDSSISKSDFSRI
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacgggccaatctggtatttcacaataaagtgatagatggaactgctattaaa
cgacttattagccgattaatagatcacttcgggatggcatatacatcacacatcctagat
caagtaaagactctgggtttccagcaagccactgctacatccatttcattaggaattgat
gatcttttaacgataccttctaagggctggcttgtccaagatgctgaacaacaaagttgg
attttggaaaaacaccatcattatgggaatgtacatgcggtagaaaaattacgccaatct
attgagatatggtatgctacaagtgaatatttgcgacaagaaatgaatcctaattttagg
atgacggaccccttcaatccagtccatatgatgtctttttcgggagctaggggaaatgca
tctcaagtacatcaattagtgggtatgagaggattaatgtcggatccccaaggacaaatg
attgatttacctattcaaagcaatttacgcgaaggactgtctttaacagaatatattatt
tcttgctatggagcccgtaaaggagttgtagatactgctgtacgcacatcagatgctgga
tatcttacgcgtcgacttgttgaagtagttcaacatattgttgtacgtagaacagattgt
ggcactatccgagggatttctgtgagtcctcgaaataaaaatcggatgatgtcagaaaga
atttttatccaaacattaattggtcgtgtcttagcagacgatatatatataggtttccga
tgtgtcgcctttcgaaatcaagatcttgggattggacttgtcaatcgattaataaccttt
ggaacacaatcaatatctattcgaactccctttacttgtcggagtacatcttggatctgt
cgattatgttatggtcggagtcccactcatggtgacctagttgaattgggggaagctgta
ggtattatcgcgggtcaatcgatcggcgaaccggggactcaactaacattaagaactttt
cataccggcggagtatttacaggaggtactgccgaacatgtacgagccccttataatgga
aaaataaaattcaatgaggatttggttcatcctacacgtacacgtcacgggcatcctgcc
tttctatgttatatagacttgtctgtaattattgagagcgaagatattatacatagcgtg
actattccaccaaaaagttttcttttagttcaaaatgatcaatatgtggaatcagaacaa
gtgattgctgagattcgcgagggaacatacacttttcattttaaagagagggttagaaaa
tatatttattctgactcagagggcgaaatgcactggagtactgatgtgtcccatgcaccc
gaatttacatatagtaatgtccacctcttaccaaaaacaagtcatttatggatattatca
ggaggttcatgtggatctagtgtaattcttttttcgatccataaagatcaagatcaaatg
aatataccctttctttccgccgaaagaaaatctatttctagcctctcagtgaataatgat
caagtgagccaaaaattttttagttccgattttgctgatcaaaaaaaattagggatttcc
gattattcagaattgaatggaaacttaggtactagtcattataatttcatatattctgct
atttttcatgagaactcggatttattagcaaaaaggcgaagaaatcgatttctcattcca
ttccaatcgattcaagagcaagagaaagaattcataccgcattcaggtatctcggttgaa
atacccataaatggtattttccgtagaaatagtatttttgctttttttgatgatcctaga
taccgaagaaagagttccggaattcttaaatatgggactctaaaggcggattcaatcatc
caaaaagaggatatgattgagtatcgaggagtccaaaaatttaagacaaaatacgaaatg
aacgtagatcgcttttttttcattcctgaggaagtgcatattttacccgaatcctctgcc
ataatggtacagaactatagtatcattggagtcgatacacgactcactttaaatataaga
agccaagtcggcgggttgatccgagtagagagaaaaaaaaaaaggattgaactcaaaata
ttttcgggggatatccattttccggacaagacagataaaatatcccgacacagtggcatc
ttgataccgccaggaagaggaaaaaaaaactcgaaggaatccaaaaaatttaaaaattgg
atttatgcccaacggatcacaccaaccaagaaaaagttttttgttttggtgcggcccgta
gccacctatgagatagcggacagtataaatttggcaacactcttcccacaagatctcttt
cgggaaaaggataatattcaacttcgagttttcaactatatcctttatggaaatggcaaa
cccactcgaggaatttctgacacaagtattcaattagttcgaacttgtttagtcttgaat
tgggaccaagacaacaaaaattcttccctcgaggaggtccgggctttctttgttgaagta
agtacaaagggtttgattcaagatttcataagaattggcttagtgaaatcccatatttca
tatataagaaaaaggaataattcgccagattcgggattgatctctgcagatcacatgaat
ccgttttattcgatttcgcccaaggctggcattcttcaacaatcacttagacaaaatcac
ggaactattcgtatgttcttaaatcgaaataaggaatcccaatctttgttaattttatca
tcatctaattgttttagaatgggtccatttaatcatgtaaaatatcacaatgtgataaac
aaatcaataaaaaaaaatactctaattacaattaaaaattcgtcgggccccttaggaaca
gctacccaaatttcaaatttttattcgtttttgcctttactaacttataataagatctct
ttaattaaatatttgcaacttgataacttaaaatatatttttcaagtaattaactcttat
ttaatcgatgaaaacggaaaaatttttaatctcgacccatacagtaacgttgttttgaat
ccattcaaattgaattggtattttcttcatcaaaattatcatcataattattgtgaggaa
acgtccacaataattagtcttggacaatttttttgtgaaaatttatgtatagccaaaaaa
gaaccgcacctaaaatcgggtcaagttttaattgttcaaagggattctgtagtaataaga
tctgcgaagccctatttggctactccgggagcaaaagttcatgggcattacagagaaatt
ctttacgaaggggatacattagttacatttatatatgaaaaatcgagatccggtgatata
acacaaggtcttccaaaagtagaacaagttttagaagtccgctcgattgattcaatatcg
ctgaacttagaaaagcggattaagggttggaacaagtgtataacaagaattcttggaatt
ccttggggattcttgattggtgctgagctaactatagtgcaaagtcgtatttctttggtt
aataagattcaaaaggtttatcgatcccagggggtgcagattcataataggcatatcgaa
attattgtacgtcaaataacatcaaaagttttggtttccgaagagggaatgtctaatgtt
tttttacctggagaacttattggattgttacgagcagaacgaacggggcgtgctttagaa
gaagcaatctgttatcgagccgttttattaggaataactcgagcatctttgaatactcaa
agttttatatccgaagcaagttttcaagaaactgctcgagttttagcaaaagccgctctt
cggggtcgtatcgattggttgaaaggcctgaaagaaaatgttgttttagggggggtgatc
cccgccgggaccggattcaacaaaggattggtgcattgttcacggcaacataccaacatt
cttttggaaaaaaaaacaaagaatttagctttattcgagggagatatgagagatatttta
ttctaccacagggaattttgtgactcttctatttccaaatctgacttttctaggatttaa
DBGET
integrated database retrieval system