Arabidopsis lyrata (lyrate rockcress): 9312260
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Entry
9312260 CDS
T01578
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9312260
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
9312260
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
9312260
NCBI-ProteinID:
XP_020882285
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MMLQRSCIVLLFSLFLFTPQMGFSVLNRTVLLIPHPDPELVAYEVQWKVNASITRRQALD
TTDQAGSNPCFTGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSSD
DDAVDPKPGTLRYGVIQEEPLWIVFPSNMMIKLKQELIFNSYKTLDGRGANVHIVGGGCI
TLQYVSNIIIHNIHIHHCYQSGNTNVRSSPTHYGFRTKSDGDGISIFGSKDIWIDHCSLS
RCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDHYEPDSGMQVTIAFNHFGEKLIQR
MPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPFAKEVTKRVETPDGD
WKGWNWRSEGDILVNGAFFVASGEGAEMRYEKAYSVEPKSASFITQITFHSGVLGVGGRN
NNLGMWTTTGSEGNSGLDSYNDYTDEMSAAGSTNRLSFSVLVLAFMLSSISYLAMFTSST
QMFML
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgatgcttcaaagaagctgcattgtacttctcttctctctttttctgttcactccacaa
atgggtttctccgtgctcaacagaactgtacttctcataccacatcctgacccggaacta
gtcgcttatgaagttcagtggaaagtaaatgcatctataacaagacgtcaagctttggac
acgacggaccaggccggttcaaacccgtgcttcaccggtaacccaatcgatgactgttgg
aaatgtgacccaaactggcctaataaccgtcaagggctagcagattgtggtatcgggttc
ggacagtacgcattaggaggcaaaggtggtcaattttacttcgtcactgattcttcggac
gatgatgccgtcgaccctaaaccgggcactctcagatatggagtgatacaagaagagcca
ttgtggatagtgttcccaagcaacatgatgattaaactaaagcaagagttaatattcaat
agttacaagacacttgatggaagaggagctaatgttcacattgttggtggtggctgcatc
actcttcaatatgtctccaatatcatcattcacaacattcatatccaccattgttaccaa
tccgggaatactaacgtgcggtcaagtccaacgcactacgggttcagaacgaaatcggac
ggtgatggtatctctatattcggatcaaaggacatttggatcgaccattgttctctatcg
agatgcaaggacggtctgatagatgcggtgatgggttccacaggaattactatatcgaac
aacttcttctctcaccataatgaagtcatgcttcttggtcacagcgatcactatgaacca
gacagtggcatgcaggtaacaattgcgtttaatcactttggagagaaattgatacaaagg
atgccgaggtgtcgacgtggatatatccatgttgttaataatgattttactcaatgggaa
atgtatgcgattggcggtagcggtaacccgactattaacagtcagggcaatcggtacacc
gccccaaccaatccattcgccaaagaggtgactaagagagtggaaacaccggatggggat
tggaaagggtggaactggagatcagagggggacattttggtgaatggagcgttcttcgtg
gcatccggtgaaggtgcagaaatgaggtatgagaaggcatatagcgtcgagcctaagtcc
gcctcattcattacacaaatcacatttcactcaggtgttctcggcgtcggcggcaggaat
aacaatctggggatgtggaccactactggatcggaaggtaatagcggtttagattcttac
aacgactataccgatgaaatgtctgccgccggttcaaccaaccggttatctttttcagtt
cttgttttagcattcatgctaagttcgatatcatatttggccatgttcacttcttcaacc
caaatgtttatgttgtaa
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