KEGG   Arabidopsis lyrata (lyrate rockcress): 9312341
Entry
9312341           CDS       T01578                                 
Name
(RefSeq) ras-related protein RABF1 isoform X1
  KO
K07888  Ras-related protein Rab-5B
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04144  Endocytosis
aly04145  Phagosome
aly04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:aly00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    9312341
   04145 Phagosome
    9312341
   04148 Efferocytosis
    9312341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:aly04131]
    9312341
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:aly04147]
    9312341
   04031 GTP-binding proteins [BR:aly04031]
    9312341
Membrane trafficking [BR:aly04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    9312341
 Endosome - Lysosome transport
    9312341
Exosome [BR:aly04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   9312341
  Exosomal proteins of other body fluids (saliva and urine)
   9312341
  Exosomal proteins of colorectal cancer cells
   9312341
  Exosomal proteins of melanoma cells
   9312341
GTP-binding proteins [BR:aly04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    9312341
SSDB
Motif
Pfam: Ras Roc Arf RsgA_GTPase Gtr1_RagA GTP_EFTU MMR_HSR1 AAA_7 TniB AAA_16
Other DBs
NCBI-GeneID: 9312341
NCBI-ProteinID: XP_002876273
UniProt: D7LUY2
LinkDB
Position
Unknown
AA seq 202 aa
MGCATSLPDRNSGALSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA
TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE
SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGIGLAEKNGMFFIETSAKT
ADNINQLFEEIGKRLPRPAPSS
NT seq 609 nt   +upstreamnt  +downstreamnt
atgggatgtgctacttctcttccagataggaactctggagctttaagtggtcttagcaat
tcagagaatgctgttccagctgatgctaaaaatctacgtgtgaagttagttctattagga
gattctggtgttggtaaaagctgcattgtccttcgatttgtccgtggtcagtttgacgct
acatctaaggtaactgttggagcctcgttcttgtcccaaacaatagcattgcaagactct
accacagtgaagtttgaaatatgggatacagcaggacaagagaggtattctgctcttgca
ccactatactaccgtggagctggagttgctgttattgtgtatgatataacaagtcctgaa
tcgttcaagaaagctcagtattgggttaaggaactgcaaaagcatggaagcccagatatt
gttatggctctggttggtaacaaagctgatctacatgagaaaagagaagtaccaaccgag
gatgggatagggcttgcagagaaaaacggcatgttctttattgagacgtcagccaagaca
gccgataacataaatcaactatttgaggaaatcggcaagaggctacctcgtcctgctcct
tcgtcatga

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