Arabidopsis lyrata (lyrate rockcress): 9323716
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Entry
9323716 CDS
T01578
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9323716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9323716
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
9323716
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_8
TPR_11
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_19
TPR_7
TPR_12
TPR_9
TPR_20
BTAD
TPR_NPHP3
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
9323716
NCBI-ProteinID:
XP_020890180
LinkDB
All DBs
Position
Unknown
AA seq
1168 aa
AA seq
DB search
MELDQLKKSVEENPDDSSLQFELGLHLWDNGGDSEKAAEHFVLSAKLNPNNAAAFKYLGH
YYSRVTLDLNRAAKCYQRAVLINPNDSDSGEALCDLFDRQGKEILEIAVCRDASEKSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKEC
INLGAFGWAASLLEDARKAAKASSELASSMSCIWKLHGDIQLTYARCFPWSGGTENSEFT
LKTFSDSILSWRSICYSAALSAKASYQRALHLAPWQANVYTDIAIACDLVSSLSDDSDTS
SSWKLPEKMALGALLLECENSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQ
IFRESDEMKFAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAE
FQVGLAWLALLQGNISSPQIFACIEQAVQRTPYYPESHNLHGLVCEARHNYHTAIASYRL
ALAAMSIYPDNLVKSHAGKVSINLIRSLSKAGRFKESVMECANLKSKGLLDAGGLQIYAF
SLWKTGQNDSALSVIRDLAGRISTMEKTSIAFPISFICSLLYCISGLDSAITSIQKMPKD
FFQSSKISFIVSAIHSLDLSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTGAGDF
LGFEKGIAHLRKAIHMYPHSNLIRNLLGYILLAGEGMKDACTASRCCIINVSDCANKEGL
KSALEVLGGGSVACNVIGNTAPRFSFPTCHCQYLNAPVVVVELQRFLHQEPWNSDVRYLL
ILNLVQKAREQRFPRQLCSAIERLISVALSDETCSKECEYQKFQLLLCASEISLQKGNIA
ESIAHAGKASSLSLPRSYLFLGHLQLCRAYAAKGSTRNMQEEYRACLELKTDSNIGWICL
KLIESQYDLEPDANLLEMSLQECSSQKKNSWKEWMGVYSLARGLDSNGKKDFSSAEEFLA
QACSLLNSESCLLLCHGAVCMELARQSNDSQFLSLAVKSLSKVQASSLIPLPIVYTLLAQ
AHGSLGSKEKWEKNLRLEWFCWPPEMRPAEVYFQMHILARQSEDRPETASGIENYQSPEK
WVVRAIHTDPSCLRYWKVLDKLVQHPMS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggaattggatcaacttaagaagtctgtagaggagaacccagatgactcttctctacaa
ttcgaactcggtttgcatctatgggataatggtggagattcagagaaagcggcggagcac
tttgtgttgtcggcgaagttaaacccgaataatgcggcggcgtttaagtatttagggcat
tactactcgcgtgtgacgcttgatcttaatcgagctgctaagtgttaccaaagagcagtg
ttgataaaccctaatgattctgattctggagaagctttgtgcgatttatttgatagacaa
gggaaagagattttggaaattgcggtttgtcgtgacgcttctgagaagtctccaaaggct
ttctgggccttttgcagattgggttatattcagcttcatcagaagaagtggtctgaagct
gttcaaagccttcaacatgcaattagaggttatcctaccgtgtctgacttgtgggaagct
ctaggccttgcttaccagcgacttggaatgtttactgctgctatcaaggcgtatggccgt
gccattgagttagatgagaccaaaatttttgcattagtggagagtgcaaatatctttttg
atgcttggttcatatagaaagggtgtggagctatttgagcaagcactgaagatttcacct
cagaatatttctgtgctctatggtcttgcttctggattgcttagttggtcaaaggaatgc
ataaatttgggcgcatttggatgggcagcttcactattggaggatgcccgtaaagctgca
aaagcaagcagtgaactggccagcagtatgtcttgtatatggaaattgcatggagatatt
cagcttacatacgcaagatgctttccatggtctggtggaactgaaaactcggaattcact
ttgaagacttttagtgattcaattctttcttggagaagcatttgttactcagctgcattg
tcagccaaagcttcttaccagcgagctctacacttagccccatggcaagctaatgtttat
actgacatagccatagcttgtgatcttgtttcaagtttaagcgatgactctgatacttca
agttcttggaagctaccagaaaagatggctctgggagcattattgctggaatgcgaaaac
tcggagttctgggttgctttgggttgtatgtctgataatagtgctttgaaactacatgct
ttgatccgggcattgcatttggatgtatctttagccgttgcttgggctttcatgggccag
atcttcagggaatcggatgaaatgaaatttgcaaagcaggcttttgattgtgctagaagc
atagatcctacacttgcgctaccttgggctggctcagctgatacgtatgcgagggagtca
acatcagacgaggcttttgagagttgtttacgagctgcacagatatcacctcttgcagaa
ttccaagttggtttggcatggcttgctttactgcagggaaatatatcatctccgcagatt
tttgcttgcattgagcaggcagtgcagcgcaccccttattaccctgaatcccataacctc
cacgggctagtttgcgaggcaagacataattatcacactgctattgcttcttataggcta
gcactagctgcaatgagtatttaccccgacaatttagtaaaatctcatgctggaaaagta
tcgataaacttgatcaggtcactcagcaaggcaggacgattcaaagaatctgttatggaa
tgcgctaatttgaagtcaaaaggtttgcttgatgctggaggtttgcaaatatatgctttc
tctctgtggaagactggtcagaatgattcggctctttcagtgattagggatctggctggt
aggatttctacaatggaaaaaacctcaatagccttcccaatcagcttcatctgtagtcta
ctttattgtatatctgggttagattctgctatcaccagcatccagaaaatgcctaaggat
ttcttccagagttcgaaaatcagctttatagtatctgccatccattctcttgatctgagt
gatagactccagtcgattgttgcaagcactcgtagctatataacatcacaagaagaaata
gttgcaatgcactatttgatagcactcagcaaattgctgaaaactggagcaggagatttt
cttggatttgagaaggggattgcccacctcagaaaagctattcatatgtatcctcatagt
aatttgataaggaacctgcttggatatattttgttagctggtgaaggaatgaaagatgcc
tgtactgctagtaggtgttgtatcataaatgtatctgactgtgcaaataaggaaggtctg
aagtcagcattggaggtccttggtggaggatcggttgcttgcaatgtaattggcaataca
gctccaaggttctcatttccgacatgccattgtcagtatctgaatgctcctgttgttgtt
gtggaactgcaaagattcttgcatcaagaaccttggaacagcgatgtaagatacttgctt
attctgaatctcgtgcagaaggcccgtgagcagagatttcctcgccagctttgtagtgct
attgagcgtctaatctctgtggcactctctgatgagacatgttcgaaggaatgcgagtat
caaaagttccagcttctgctttgtgcttctgaaatcagtttgcagaagggaaatatagca
gagtccattgcccatgctggaaaggcttcttccctttcgcttccacgtagctacctattt
ctaggacatttgcaactttgccgtgcctatgcagcaaaagggagtaccagaaacatgcaa
gaggaatacagagcttgtttggagctcaagactgactcaaatattggttggatttgcctg
aagctcatagaatctcagtatgatctggaacctgatgctaatctcttagagatgagtcta
caagaatgctcaagccagaagaagaattcatggaaagaatggatgggtgtatacagttta
gctcgtggcttagattctaacgggaaaaaagacttttcctctgcagaggaattccttgca
caagcttgttcgttgttaaattcagagagctgtctacttctttgccatggtgctgtctgc
atggagctggctagacagtctaatgactcgcagttcctctcactagctgtaaagagtctt
agcaaagttcaagcgagttcgttgattcctttgcctatcgtgtatacattattagctcaa
gcacatggaagtcttggctctaaagagaaatgggagaaaaaccttcgtctcgaatggttc
tgctggccaccagaaatgagacctgcagaggtttacttccagatgcacatactcgcaaga
caatcagaagacagaccggaaaccgcttcagggattgaaaactatcaaagcccagagaaa
tgggtggttagggcgattcacactgatccttcttgtctgagatattggaaggtcttggat
aagcttgttcaacatcccatgagctga
DBGET
integrated database retrieval system
