Arabidopsis lyrata (lyrate rockcress): 9325401
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Entry
9325401 CDS
T01578
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X5
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9325401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9325401
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9325401
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
9325401
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Fe-ADH_2
Motif
Other DBs
NCBI-GeneID:
9325401
NCBI-ProteinID:
XP_002889337
UniProt:
D7KP44
LinkDB
All DBs
Position
Unknown
AA seq
2379 aa
AA seq
DB search
MTPSKVAGHTRFLLHSFHDSDVDSIALQLSQLVDFGVETSIPVLKTCLDCFTVRRSHPNS
LQLEKVVSLVFKHVLNLSNLATLLSHALKDVELTQDSVHDLTTCLNFSISEKIGFALALT
DFERLDAKTAGRNLLLAEIEQLSANTAQIDSTEQIQNVLLFLHKSEDLSMHLDSFLQFLS
SAQPRDDFSFALSPMLSQQVHEAHVFRSMDFHIDSAENEFDAILAEIDKEISVGDLMGEL
GCGFTADALQCKEILSTFAPLGEATISRILGNVSRTCADLEDNHTTFPTFTLALSCCIPT
ELPTPRSWNVDILVDTIKQLAPGTSWRKVIENLDHDGFDIPNMESFSFFMRLYKAACKEP
FPLDAVCASVWKNMEGQLSFLKHAISAPPEVFTFMHSPRKLVYIDNMHSHEQQLGLSNHA
WLSLDLLNVLCQLAERGHAVLVSSLLQYPLTQCPRTLLLGMTHIKTAYNLIQREVVSAIL
PVIITNSQDSGFILNLWHQNAELVLWGILDAQNLKADSLLRIIEICHELKILSVVLESVP
VSFSIKLAVLASLRGLLDIENWLPNCLYVYKDLFAEECLKFVKNVHFSESDDFTAKSFHP
SDPLSDLHLDATTSLMKVLKAHDNAITSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSTS
TAYGDDVEAEANAYFHQMFSSQLSVDAMVQMLSRYKDSLVQREKLIFECMIANLFEEYRF
FPKYPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALEQF
VNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPGPSQSIPG
NGELSGSGIGQSALQLQQKNEVHIDDRSKLPNVLSNEAKPLLPSLSTTSADVSVNPKNPG
ITTSSSTSAGFVRPARAATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKVSFIINN
ISTANIESKGKEFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEI
LQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEAY
EKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLF
KNLGVEVKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPQMIPEPKTISPLKQIDLP
LDVANSPNTDVPSKLLSQYVAPQRVYTNTLVDDEKVATLGLPEQLPSPQGLFQSTPSPLF
SISQLSAALPNIGNHVVINQKLSAFGMHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQ
TTKELVLKDYALEPDESRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGLNI
SNDALEQIVQLVTNDNLDLGCAAIEQAATEKAIQTIDADIAQQLLLRRKHRDGAGSSFFD
PNILSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQHPWQKQSTQTSHGLSAASSSSGDV
ALGSGYGPVSGKVASEFLSSVGNARMDMVSRPTDISVDGFESSPVSLLSSQVDPAGDSSS
LQLSKSLPTSELNLAESSDAATKETGTSLQTLTSATMERLGGNNIIQPSLSTRDALDKCQ
IVTQKMEELVANNAGDDEIQAVVSEVPEIILRCISRDEAAFAVAQKAFKALYENASSNLH
VSANLGILVAIRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLSLAEYNVHMAK
HLDGGRNKSATDFAISLLQSLVTEESSVISELHSLVDALAKLASKSGSPESLQQLIDIIR
NPVTNTAGLSDSSAGNDNNDRQKDEKVACNITTNTEENTSLDYVELDPAVFQNRVSTLFK
NWYQICELPGANETACSQYVLHLHQTGLLKGDDTTESFFRILLELSVAHCISSEDINSGA
VQSPQQPQSPSFLIIDMYAKLVFSILKYFPEQESSSKLFLLSEIMAATVRFIHKDAEDKK
TSLNPKPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKIPAFSFAWLELV
SHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLVLL
HDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPC
ILSEVDAALKAKQMKNEVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINS
LVLYTGMQAIQQLQAGETQAQNVVALQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTH
YFSFIMLYLFFESDQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKQAF
IRCAPEIEKLFESVARSCGGLKPVDEGMVSGGWVSDNSH
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atgactccctccaaggtcgccggtcatacccggttcttgctccacagctttcatgattcc
gatgtcgactccatcgccctccagctttctcagttggttgattttggagtcgagactagc
attccagttctcaagacctgcctcgattgcttcaccgtccggcgaagccatcctaattcg
ttgcagcttgagaaagttgtatccttggtctttaaacatgtgctcaatttgtctaatctc
gccaccctgctttctcacgccctcaaggatgttgagctcactcaagattccgtccatgat
ttgactacttgtttgaatttttctatctctgagaaaattggctttgctctcgccctcact
gattttgaaagattagatgcaaagacggctggacgcaacctactattggctgagattgag
caactctctgccaatactgcccagattgattcaactgagcaaattcagaatgttcttttg
tttctccacaaatctgaggatctttccatgcatttggattccttcttacagtttttgtct
tctgctcaacctagagatgacttctcttttgctctttcacctatgctttctcaacaagtt
catgaagctcatgttttcaggagcatggattttcacattgattctgctgaaaacgagttt
gatgctatcttagctgaaatcgataaggaaatcagtgttggagatctcatgggagaatta
ggttgtggattcactgctgatgccctacagtgcaaagaaatcttgtctacttttgctcca
ttaggagaggctactatctcaagaattcttggcaatgtttctcggacatgtgctgatctt
gaagataatcacaccacctttccaacattcactttagcccttagttgctgcatccctact
gaacttcccaccccaaggtcgtggaatgttgatattctagttgacacaatcaagcagctt
gctcctggcacaagctggaggaaagtaattgagaatctcgatcatgacggatttgacatc
cctaatatggagtctttctcattttttatgcggctctataaagctgcttgcaaggagcca
tttcctcttgatgctgtatgtgcttctgtctggaaaaatatggaaggtcaattatccttt
cttaagcatgcaatatctgctccaccagaagtattcacctttatgcattctccaaggaag
ctggtatatattgataacatgcacagccatgagcaacagttaggactatccaatcatgca
tggctgtcgctcgatctcctgaatgtgctttgccaattggccgagagaggtcatgccgtt
ttagttagctcgttgctccagtatccactcacacagtgtcctagaaccttgcttcttgga
atgacacacatcaaaactgcctataacctcatacagcgtgaagtggtttctgctattctt
ccagtgataataacgaattcccaggatagtggttttatccttaatctctggcatcagaat
gcagaactcgttctgtgggggattttagatgcccaaaatcttaaagcagacagcttgctc
cgaataattgaaatctgtcatgagctaaagattctctctgttgtcttagaatcagttcca
gtctcattcagtatcaaattggcagtccttgcctcattgagaggtcttttggacattgag
aactggttgccaaactgcctgtatgtgtataaggatctctttgctgaggagtgtctcaaa
tttgtcaagaatgtgcattttagcgaatcagacgattttactgccaaaagttttcatcct
tcagatcctttatcagatcttcatctggatgcaacaacttccctaatgaaagttttgaaa
gctcatgataatgcgattacttcatctcaactagtcgaggagattgaaaaggtcaatgca
gctattttggattgtaatcctaaactgcagaatggcgaggctaaagattcatcaacatca
actgcatatggagatgatgttgaggcagaagcaaacgcctatttccatcaaatgttttct
agtcagttgagtgttgatgcaatggttcaaatgctttcccgatacaaggactctttggtt
caaagggaaaaattaatttttgaatgcatgattgctaatctgtttgaagaatatcggttt
ttccccaagtatcccgagagacagctgaaaatagcctccatactctttggttctgttata
aaacaccagcttataagttccctcactctggggatggccctgcgtcttgtgttggattct
ttgcgtaaacctgcagattcaaaaatgtttctgtttggaagcaaagctctggaacagttc
gtgaatcgtcttgttgaattgcctcaatactgcaaccatattttgcaaatatctcatctg
cgtagcactcaccctgagttagtcactgttattgaacaagcactttcaaggatatcatct
ggtaatttagaatcagatgcctctgtttcgcaccctgggccctcacagtctatccctgga
aatggcgagttgagtggttctggaattggccaatcagcattacagcttcaacagaaaaat
gaagtgcatattgatgaccgcagcaaattgccaaatgtgctatctaacgaggcaaagcca
cttctgccatcgttatcaaccacttccgctgatgtttctgtcaatcctaagaatcctggc
attacaacttcttcatcaacctccgctggttttgttcgcccagctcgtgcagccacttca
acaaggtttggctcggctttgaacatagaaaccttggttgcagcagcagaaagaagggaa
aacgcaatcgaggctccaccttcagatgttcaggacaaagtttctttcataatcaataat
atctctacagcaaacattgaatctaaagggaaagagtttgctgaaattttgccccaacag
tattatccttggtttgcacagtacatggttatgaaaagagcgagcatcgagccgaatttt
catgatctgtacctgaagttcttggacaaagttgattccaagctgttgtttaaggagata
cttcaaaatacttacgaaaattgcaaggttcttttgggttcagagctcataaagtcaagt
tcagaagagcgatctctgcttaaaaatttaggcagttggcttggaaagttgaccattgga
aggaattatgttttaagggcgcgagaaatagatccaaaatccttgattgtggaggcctat
gaaaaagggttgatgatagcggtcattccattcacttcaaaggttctggagccatgccaa
aacagtattgcgtatcagcctcccaatccttggacgatggctatacttgggttactcgct
gagatctattcaatgccaaacctaaaaatgaatctgaagtttgacatagaggttttattc
aagaaccttggtgttgaggttaaggaagtagcgccaacttcccttctaaaggatcggaag
agagaaatagatgggaatcctgattttagtaacaaagatcttggagtaacacatatatct
cagccacagatgattccagagcctaaaacaatttctcctcttaagcaaattgatctacct
cttgatgttgcaaattcacctaatacagacgttccctcgaagttattatcacagtatgta
gccccacaacgtgtttatactaatactttggtggatgacgagaaagtggcaactctaggc
ttgcctgagcagctcccgtcacctcaaggactgttccagtcaactccatctccattgttt
tctattagtcagctgtcagcagcacttcccaacattggaaatcatgttgttatcaatcag
aaattaagcgcatttggtatgcactttccatttcagagagtggtaccacttgccatggac
agagctatcaaggagattgtgtctggtattgttcagcgaagtgtttgtattgcatgccaa
acaacaaaagagcttgtgctaaaggattatgccctggaacccgatgagtcacgtatttat
aatgctgctcacttgatggttgcgagtttagctgggagtttggctcatgtgacttgcaag
gaacccctgcgcacttcaatatccggtcatctacggaattcgctccagggtctgaatatt
tcaaatgacgctcttgaacaaattgtgcaacttgtcacaaatgacaaccttgatttgggt
tgtgctgctattgaacaggcggctacagagaaggcaatacaaacaattgatgcggacatt
gcacagcaattgttgttacgcagaaagcatagagatggtgctggatcctcctttttcgat
ccaaacattctatcacaaaattccgtcagttttatacctgaatccctccgtccaaaacct
ggacacctctccctgtctcagcagcgagtttatgaggactttgttcaacatccttggcag
aagcagtcgacccaaacgtcacatggtttatctgctgcatcaagctcatctggcgatgtt
gcgcttggtagtgggtatggtccagtatcaggaaaagttgcttctgaatttttgtctagt
gttggaaacgctcggatggacatggtctcccggccaacagatatttctgtggatggtttt
gaatcttccccagtctcacttttgagctcacaagttgatccagctggtgactcatccagt
cttcaactttctaagtcactaccaacctctgaattgaatctggctgaatcctctgacgct
gctacgaaagaaactggaacatcactgcagacattgacttctgctaccatggaacgactt
ggtggaaataatattatacagccttcactgtccacgagagatgcactggataaatgtcaa
attgttactcagaagatggaggaattagtggctaataatgcaggagatgacgaaatccag
gccgtagtttctgaagttcctgaaatcatcctcagatgtataagcagagatgaagccgct
tttgctgtcgcccaaaaagctttcaaggctctttatgagaatgcatcaagtaaccttcac
gtcagtgctaacctaggaatacttgttgctattcgtgatgtttgcaagcgtgttgttaaa
gagctcactagttgggttatttattcagaggaggagcggaagctcaacaaagatattact
attggtctaatccaacgtgagttgcttagcctagcggagtacaatgtccacatggcgaag
catcttgatggagggagaaacaagagcgcaactgactttgctatttctctactccaatct
ttggtcactgaggagtcgagtgtcatttcagagctccacagtcttgttgatgcgctggca
aagcttgcctcaaaatccggatcgcctgagtcattgcaacagctaattgacatcatacga
aatccagttactaacacagctggcctctctgatagttcagccggaaatgacaacaatgat
aggcaaaaggatgaaaaggttgcgtgcaatatcaccactaacacagaagagaataccagc
ttggattatgtggaattagatcctgcggttttccagaatcgggtgtccacgctttttaaa
aactggtatcaaatctgcgaacttcctggtgcaaatgaaaccgcttgttcacaatacgtc
ttgcatttgcatcagactggactacttaagggagatgatacaacagagagttttttccga
attcttctggaactttctgttgctcattgtatatcttctgaagatattaattctggtgct
gtgcaatctcctcagcaacctcagagtccatcattccttatcattgatatgtatgcaaag
cttgttttttcaatattgaagtatttccctgagcaggagtctagcagcaagttatttctt
ctttcagagatcatggctgccacagtgagatttattcacaaggacgcagaagataaaaag
acatcactcaatcctaaaccatatttccgattgttcatcaactggctactggacttgtgt
tccctggatcctgggacggatggtgcaaactttcaggttctcacagcttttgccaacgcc
ttccacgcgttgcagcctcttaagatacctgctttcagctttgcatggctagagcttgtc
agccacagaagcttcatgcccaaactacttacagtaaatggccagaagggctggccatat
gttcaacgcctgctggtggacttgcttcagtttcttgagccatttttaagaaatgctgaa
ctcggaggaccagttcatttcctatacaaagggacattgagagtgttactggtgctgctt
catgacttcccagagttcctgtgtgattatcattttactttctgtgatgtgattccttca
agttgcatacaaatgcggaatattatcctcagttcttttccgcggaacatgaggcttcct
gatccttctaccccaaatttaaagattgatttgttgcctgagatagtagaagctccctgt
atcctttccgaggttgatgctgcgctaaaggcaaagcaaatgaagaatgaggtggatgag
tatcttacgtcgaggcagcaaaattcaactttcctaagtgagttgaagacaaagttactt
ctgtcgtccagcgaggctagttcagctggaacccgttacagtgtaccattgatcaactcg
cttgtgctatatactggaatgcaggctattcagcagcttcaggccggtgagacacaggct
caaaatgttgtggccttgcagatgttcaagtatttaagtatggaacttgatactgaaggg
cggtacctgttcctaaatgcaatagccaatcagcttcgatatcccaacaaccacactcat
tacttttctttcatcatgctctatctgttcttcgaatctgaccaggagatcatacaggag
caaataacaagagtgctgttggaacggctaattgtgaacaggccacatccatggggactt
ctaatcacattcattgagctaataaagaatccaagatatggcttctggaaacaagccttc
atcagatgtgcgcctgagattgagaagctctttgaatcggtagccagatcctgtggtggc
cttaagcctgtcgacgagggaatggtctcgggaggttgggtctcagacaattctcattag
DBGET
integrated database retrieval system
