Alteromonas mediterranea DE1: amad1_18535
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Entry
amad1_18535 CDS
T02340
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amaa
Alteromonas mediterranea DE1
Pathway
amaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
amad1_18535 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaa03021
]
amad1_18535 (rpoB)
03400 DNA repair and recombination proteins [BR:
amaa03400
]
amad1_18535 (rpoB)
Enzymes [BR:
amaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
amad1_18535 (rpoB)
Transcription machinery [BR:
amaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
amad1_18535 (rpoB)
DNA repair and recombination proteins [BR:
amaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
amad1_18535 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AFV87184
LinkDB
All DBs
Position
complement(4203677..4207705)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIETDPEAQYGLEAAFRSVFPIK
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMTSEEILDTFFDKVNVRIDKDKLMME
VVPDRLRGETAAFDIIDGEGNVVVETGRRISARHTRALEKAGLNELEVPADYLIGRVYAA
TYVNEDTGEVIVSANEELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGREELIGSGT
LDKEDIISVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQFAIAQANIALTENGELVDDLIPCRHRGETTLMPTEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVT
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAQTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHA
EIKADFDKKFETKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDANGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA
EMREFLKKVYELGENHQEVDIDNFTDHEVRRLAENLRKGVPIATPVFDGARESEIKEMLK
LADIPESGQISLFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
accgatccggaagctcaatacggtttggaagcagcatttcgttccgtttttccaattaaa
agctactcaggtagttcagagcttcagtatgtaagctaccgcctgggagagccagttttc
gacgttaaagaatgtcaaattcgtggcgtaactttctctgctccattaagagtaaaacta
cggttagtgttgttcgataaagacgctgccccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggcgagatcccattgatgacagagaacggtacgttcgttatcaatggt
actgagcgtgttatcgtgtcacagctacaccgttcacctggtgtattctttgatcacgac
aaaggtaaaacccactcgtcaggtaaagtgttatataacgcacgtgtaattccttaccgt
ggttcgtggttagacttcgagtttgacccgaaagataacctatttgtacgtatcgaccgt
cgtcgtaagttgcctgcaacgattattttacgcgcattggaaatgacgtctgaagaaatt
ctagatactttcttcgacaaagttaatgtacgtattgataaagacaagttgatgatggaa
gtggtgccagatcgcctacgtggggaaacggctgcatttgacattatcgatggcgaaggc
aacgtggttgttgaaaccggtcgtcgtatctcagcgcgtcatacacgtgcgcttgagaaa
gcgggtcttaatgagcttgaagttccagcagattacctaattggccgcgtatacgccgct
acttacgtaaacgaagacactggcgaagttattgtaagcgcgaacgaagaactaaccctt
gaaaacctagcggcacttagccaagcgggcatcaaagaattcgaaacgctttacattaac
gaactcgatcacggttcatatatctcagatacactgcgtatcgactcttcaactaatcgc
ttagaagcgctagttgaaatttaccgtatgatgcgtcctggtgagccaccaacaaaagac
gcagcagaaaccttgttcgataacttgttcttctcagatgaacgttacgacctatcttct
gttggccgcatgaagttcaaccgccgtttaggtcgtgaagaacttattggttcaggcaca
ctagataaagaagacattatttctgtaatgaagcagctaataatgattcgtgacggtaaa
gacgaagtcgatgatatcgatcacctaggtaaccgtcgtatccgttctgttggtgaaatg
gcagagaaccaattccgcgttggtcttgtacgtgtagagcgtgcagttaaagagcgtcta
agcttaggcgatctagacaacgtaatgccacaggacctaatcaacgctaagcctatctcg
gctgcggttaaagagttcttcggttcatctcagctttctcagttcatggaccaaaacaac
ccgctatcagaagtaacgcacaaacgtcgtatttctgcattaggcccgggtggtcttaca
cgtgaacgtgcaggtttcgaggttcgagacgtacacccgacccactacggtcgtctatgt
ccaatcgaaacgccggaaggcccgaacatcggtctaattaactcattggcaagcttcgcg
cgtaccaatgacttcggtttcttagaaacgcctttccgtcgtattgttgacggtgtggta
acagacgaaatcgattatttatctgcaattgaagaaggtcaatttgcaatcgctcaggct
aacattgcgttgactgagaatggcgagttggttgacgacctaattccttgtcgtcaccgc
ggtgaaactactttgatgccgactgaagacatcaaatacatggacgtttcaccacagcaa
atcgtttcaattgcggcaagcattattccgttcctagagcacgatgacgcaaaccgtgca
cttatgggtgcgaacatgcaacgtcaggcagtacctacactacgcgctgataagccgcta
gttggtaccggtatggaaagaactatcgcggttgactcaggtgttactgtagttgctaag
cgcggtggtgtggttgactatgttgatgccagccgtatcgtaattaaagtagacgaagat
gaaatgcttccaggtgaagcaggtatcgatatctacaacctgactaaatacacgcgttct
aaccagaacacttgtatcaatcagaagcctacctgtagcgttggcgacccgattgttact
ggtgacgtgctagctgacggtccttcaacagacctaggtgaccttgcacttggtcagaac
atgcgtattgcgttcatgccttggaatggttacaactttgaggattcaatccttatttct
gagcgtgtagcacaggaagaccgtttcactacaatccacattcaagagcttagctgtatc
gctcgtgatactaagcttgggccagaagaaatttcttctgatatcccgaacgtgggtgaa
tctgcactaagcaagcttgatgaatcaggtgttgtttacattggtgcggaagtgaaaggc
ggtgacatcctagtaggtaaagtaacgcctaaaggtgaaactcagcttacgccagaagag
aaactactacgtgcaatcttcggtgaaaaagcgtctgacgttaaagatacgtcgctacgt
gtacctaactctgttcacggtaccgtaattgacgttcaagtatttacccgtgacggtgta
gagaaagataagcgcgcgcttgaaattgaagacatgcagctacgtcaggttaagaaagac
cttactgacgagttcgaaattcttgcagacggtatttttgctcgtgcacaaactgcgctt
ctacgtgctggtgttgaccaagctaagcttgacagcctaccgcgtgaaaagtggtttgaa
attgcacttaacagcgaagatgcacagctagagctagaccaaatcgctgatcaacacgct
gaaattaaagcggacttcgataagaagtttgaaactaagcgtcgtaagatcacacaaggc
gatgacctagcacctggcgtacttaagattgttaaggtttaccttgcggttaagcgtcac
atccaaccgggtgacaagatggccggacgtcacggtaacaaaggtgttatctcgactatc
cagcctgtagaagacatgccatacgatgctaacggtacgccggtagatatcgttcttaac
ccactaggtgtaccgtctcgtatgaacatcggtcagatcctagaaactcacttgggtatg
gctgcacacggtcttggtgtgaagattgatcgcatgattaaagagcagcgtgagctggct
gaaatgcgtgagttcttgaagaaggtgtacgagcttggtgaaaatcaccaagaagttgac
atcgataacttcacagaccacgaagtacgtcgcttagcagaaaaccttcgtaagggtgtt
ccgattgcaacgcctgtattcgacggtgctcgtgaatcagaaatcaaagaaatgctgaag
cttgctgatattccagaaagcggtcagatttcattgttcgacggtcgtaccggtcgcgag
tttgagcgtccagttacggttggttacatgtacatgctgaaactgaaccacttagtagac
gacaagatgcacgcgcgttctacgggttcttacagccttgttacacagcagcctcttggt
ggtaaagcacagtttggtggtcagcgcttcggtgagatggaagtgtgggcacttgaagca
tacggtgcagcatatacccttcaggaaatgcttactgttaagtcagatgacgttaacggc
cgtaccaagatgtacaagaacatcgtcgatggcgaccacagaatggaacctggcatgcca
gaatcattcaacgtactacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa
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