Alteromonas mediterranea U7: I876_02260
Help
Entry
I876_02260 CDS
T02721
Name
(GenBank) 2',5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
amae
Alteromonas mediterranea U7
Brite
KEGG Orthology (KO) [BR:
amae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
amae03016
]
I876_02260
Enzymes [BR:
amae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
I876_02260
Transfer RNA biogenesis [BR:
amae03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
I876_02260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AGP88341
LinkDB
All DBs
Position
complement(546634..547287)
Genome browser
AA seq
217 aa
AA seq
DB search
MRSFIGLDLSATEKLALDSWRQQALPEIMPRQWVKNESSRSRKSGNKRNNHNSGQGPSLP
YAVPAANFHITLSFLGEINHRQHEALVYELDQLVSEPFSLTLNATGLWNGPKILFAAPTD
TPKALSELAKLSRKAARKAAIEVENREYKPHVTVVRKATSTLPLPLYSPSVDVHVSAFHL
FESVTTPQGVTYPVRQSWPLKHNMSVREKLRRGITDE
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagctttattggtttagatcttagcgccacagaaaaacttgctttggatagctgg
cgtcaacaggcattgcctgaaatcatgcctcgccaatgggtaaaaaacgagtcgagcagg
tctcgaaagtctggcaacaagcgcaacaatcacaatagtggacaaggaccttcgctacct
tatgccgtgcccgcggcaaactttcacatcacactcagctttttaggcgagataaatcac
cgtcagcacgaagcgctggtgtatgaactcgaccagctcgttagcgaaccattttcatta
accctaaatgcaacagggttgtggaatggccccaaaatcctatttgctgcgcctacggat
acaccaaaggcactaagtgaactcgccaagttatcgcgtaaagctgcccgcaaagcagca
atagaagtagaaaacagagaatataagcctcacgttaccgttgttagaaaggctacatca
actttacctctgccactttacagccccagtgtagacgttcacgtctcggcatttcacctg
tttgagtctgtcactacacctcagggggttacctaccctgttcgccagtcttggccgtta
aaacacaatatgtcggtaagagaaaagctacgtcggggaataaccgacgagtaa
DBGET
integrated database retrieval system
