Actinomadura madurae: LUW76_02210
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Entry
LUW76_02210 CDS
T08933
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amaz
Actinomadura madurae
Pathway
amaz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amaz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LUW76_02210 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amaz03021
]
LUW76_02210 (rpoB)
03400 DNA repair and recombination proteins [BR:
amaz03400
]
LUW76_02210 (rpoB)
Enzymes [BR:
amaz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LUW76_02210 (rpoB)
Transcription machinery [BR:
amaz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LUW76_02210 (rpoB)
DNA repair and recombination proteins [BR:
amaz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LUW76_02210 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
URM93243
LinkDB
All DBs
Position
complement(477126..480605)
Genome browser
AA seq
1159 aa
AA seq
DB search
MAAASRNASAVPAGPRRVSFARLDEPLEVPDLLAVQTDSFDWLLGNERWKARVEAAQKAG
SRSVPTQSGLEEIFEEISPIEDFSGTMSLSFRDHRFEPPKYSVEECKDKDMTYSAPMFVT
AEFINNTTGEIKSQTVFMGDFPLMSPKGTFIINGTERVVVSQLVRSPGVYFDRALDKASD
KDIYGCRVIPSRGAWLEFEIDKRDNVGVRIDRKRKQPVTVLLKALGWDEAQIRERFGSYE
SINVTLEKDHTSGQDDALLDIYRKLRPGEPPTRESAQTLLENLYFNPKRYDVAKVGRYKI
NKKLGLDLDMNQGTLTRDDIVGTIEYLVRLHAGEEEATLGAVPVPIEVDDIDHFGNRRLR
TVGELIQNQVRLGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIREFFGTSQLSQF
MQQSNPLDGLTHKRRLNALGPGGLSRERAGMEVRNVHPSHYGRMCPIETPEGPNIGLIGS
LAAFGRVNPFGFVETPYRKVENGAVTDQIDYLTADEEDRFVVAQANSPLNEDGSFAEDRV
MVRRKGGEVELVRPAEIDYMDVSARQMTSVATAMIPFLEHDDANRALMGSNMQRQAVPLL
RSEAPLVGTGMEYRAATDAGDVITAEKAGVVEEVSADYVSVMNDDGTRTTYRVTKFRRSN
QGTSYNQKPIVDEGRRVEVGQVIADGPCTDDGEMALGKNLLVAFMPWEGHNYEDAIILSQ
RLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGADVVNG
DILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEEGKVIGVRVFSRDDGD
ELPPGVNELVRVYVAQKRKITDGDKLAGRHGNKGVISKVLPVEDMPFLEDGTPVDIVLNP
LGVPGRMNVGQVLETHLGWIAAQGWDIGGVREEWAERLREKGFDRVEPRTNVATPVFDGA
GEEEIIGLLGSTIGNRDGGRMVMPSGKARLFDGRSGEPFKDPISVGYIYILKLHHLVDDK
IHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVLGRV
KVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEE
LGIDLSRRPNEGAMNIDEV
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
ttggcagcagcctcgcgcaacgcctccgccgtacccgctggtccccgtcgcgtgtcgttc
gcgcgccttgacgagccgcttgaggttcccgaccttctcgctgtccagaccgactcgttc
gactggctgctgggcaatgagaggtggaaggcccgggtcgaggcggcccagaaggccggt
agtaggagtgtcccgacgcagtcggggctggaggagatcttcgaagagatcagtccgatc
gaggacttctccgggacgatgtcgctgtcgttccgtgaccaccggttcgaaccgcccaag
tactccgtggaggagtgcaaggacaaggacatgacctactccgccccgatgttcgtcacg
gcggagttcatcaacaacaccaccggtgagatcaagagccagacggtgttcatgggtgac
ttcccgttgatgtcgcccaagggcaccttcatcatcaacgggaccgagcgggtggtggtc
tcccagctggtccgctcgccgggggtgtacttcgatcgggcgctggacaaggcgtcggac
aaggacatctacgggtgccgggtgatcccgagccggggtgcctggctggagttcgagatc
gacaagcgcgacaacgtcggggtgcgcatcgaccgcaagcgcaagcagccggtgacggtg
ctgctgaaggcgctggggtgggacgaggcgcagatccgggagcggttcggctcgtatgag
tcgatcaatgtcacgctggagaaggatcacacctccggtcaggacgatgctctgctggac
atctaccgcaagctgcgtccgggggagccgccgacgcgggagtcggcgcagacgctgctg
gagaatctgtacttcaatcccaagcggtatgacgtggccaaggtcggccgctacaagatc
aacaagaagctcggtctggacctggacatgaaccaggggacgctgaccagggacgacatc
gtcggcacgatcgagtatctggtgcggctgcacgccggtgaggaggaggcgacgctgggg
gcggtgccggtgccgatcgaggtcgatgacatcgaccacttcggcaaccggcggctgcgc
acggtgggtgagctgatccagaaccaggtgcgtctgggcctggcccggatggagcgcgtc
gtccgggagcggatgaccacgcaggacgtcgaggcgatcacgccgcagacgttgatcaac
atccggccggtggtggcctccatcagagagttcttcggcaccagccagctctcccagttc
atgcagcagagcaaccccctcgatggcctgacgcataaacggcggttgaacgcgctgggt
ccgggtggtctgtcgcgtgagcgggcgggcatggaggtccgtaacgtccacccgtcgcac
tacggccggatgtgcccgatcgagaccccggaaggccccaacatcggcctgatcggctcg
ctggcggcgttcggccgggtcaacccgttcgggttcgtcgagacgccttaccgcaaggtc
gagaacggtgccgtcacggaccagatcgactacctcaccgccgacgaggaggaccggttc
gtcgtcgcgcaggccaactcgccgctgaacgaggacgggtcgttcgcggaggaccgggtc
atggtccgcaggaagggcggcgaggtcgagctcgtccgtcctgcggagatcgactacatg
gacgtctcggcgcggcagatgacctcggtcgcgaccgcgatgatcccgttcctggagcac
gacgacgccaaccgggcgctgatgggctccaacatgcagcggcaggccgtcccgctgctg
cgcagcgaggcgccgctggtcggcacgggcatggagtaccgggcggcgaccgacgccggc
gacgtcatcacggccgagaaggccggcgtcgtcgaggaggtctcggccgactacgtgtcg
gtgatgaacgacgacggcacgcggacgacgtatcgcgtcacgaagttcaggcggtcgaac
cagggcacgtcgtacaaccagaagccgatcgtggacgagggccggcgggtcgaggtcggg
caggtgatcgcggacgggccgtgcaccgacgacggtgagatggcgctgggcaagaacctg
ctggtggcgttcatgccgtgggagggccacaactacgaggacgccatcatcctgtcccag
cggctggtgcaggacgacgtgctgtcctcgatccacatcgaggagcacgaggtcgacgcc
cgcgacaccaagctgggccccgaggagatcacccgggacatcccgaacgtctccgaggaa
gtgctggccgatctggacgagcgcggcatcatccgtatcggcgcggacgtcgtcaatggt
gacattttggtcgggaaggtcacgccgaagggcgagaccgagctgacccccgaagagcgg
ctgctgcgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgacacctcgctgaaggtc
ccgcacggcgaggaaggcaaggtcatcggtgtgcgggtgttctcccgcgacgacggcgac
gagctgccgcccggcgtcaacgagctggtccgggtgtacgtcgcgcagaagcgcaagatc
accgacggtgacaagctcgcgggccggcacggcaacaagggcgtcatctccaaggtgctg
ccggtggaggacatgccgttcctggaggacggcacccccgtcgacatcgtcctgaacccc
ctcggcgtccccgggcgcatgaacgtgggccaggtcctggagacgcacctggggtggatc
gccgcccagggctgggacatcggcggtgtgcgggaggagtgggcggagcggctgcgcgag
aagggcttcgaccgggtcgagccgcgcaccaacgtcgccacgccggtgttcgacggtgcc
ggcgaggaggagatcatcggtcttctgggcagcaccatcggcaaccgggacggcggccgg
atggtgatgccgagcggcaaggcccggctgttcgacggccggtccggcgagccgttcaag
gacccgatctcggtcggctacatctacatcctcaagttgcaccacctggtggacgacaag
atccacgcgcggtcgaccggcccgtactccatgatcacccagcagccgctcggcggtaag
gcccagttcggcggccagcgcttcggtgagatggaggtgtgggccctggaggcctacggc
gcggcctacgcgctgcaggagctgctgaccatcaagtccgacgacgtcctcggccgcgtg
aaggtgtacgaggccatcgtcaagggcgagaacatccccgagcccggcattcccgagtcc
ttcaaggtgctcatcaaggagatgcagtcgctgtgcctcaacgtcgaggtgctctccagc
gacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttccgcgccgcggaggag
ctcggcatcgacctgtcccgccgtcccaacgagggcgcgatgaacatcgacgaggtctga
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