Alteromonas macleodii Balearic Sea AD45: AMBAS45_17930
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Entry
AMBAS45_17930 CDS
T02253
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
amb
Alteromonas macleodii Balearic Sea AD45
Pathway
amb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMBAS45_17930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amb03021
]
AMBAS45_17930
03400 DNA repair and recombination proteins [BR:
amb03400
]
AMBAS45_17930
Enzymes [BR:
amb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMBAS45_17930
Transcription machinery [BR:
amb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMBAS45_17930
DNA repair and recombination proteins [BR:
amb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMBAS45_17930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AFT97043
LinkDB
All DBs
Position
complement(4213088..4217260)
Genome browser
AA seq
1390 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGMTTLERSQLLNEEEYLDALEEHGDEFEAKM
GAEAVFDLLTALDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDDVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTRDKVNGLGEGMVFTSPNEAEKAYRTG
NAELHSRVKVRITEYDIDEDGNKTEKVTLTDTTVGRAIFSLILPKGLPFEIINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYTGFHYAMIAGASVGIDDMVIPAAKKDIIDAAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKTDIVINRDGEEEEQSSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVQMTPLIEGGDVVEPLRERVL
GRVVAEDVLKPGTNEVLVERNVLLDEALVDMLEANSVDQIMVRSVITCDNDFGVCAKCYG
RDLARGHMVGSGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGSLKL
HNAKFVRNSDGKVVIVSRSTELTVIDEQGREKERYKVPYGAVLSVDDGATIAAGDVVANW
DPHSHPIITERAAKISFADIDDSNTEMQQDELTGLTRIVVKDLAKVNSKEPKLILESDEF
GLQEIRLPSFTTIEAKEGKVANEGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEISGTIGFGKETKGKKRLVITPAEGDAYEEMIPKWRQLNVFEGEKVEKGEVIADGPE
SPHDILRLRGISAVANYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITHPGDTQFL
EGEQVEVSNVKVANREIEKHGKIPAQYETQLLGITKASLSTESFISAASFQETTRVLTEA
AVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRAQRRKEQIEEMSVSAAEAEQALTEAL
NAGADEDTAE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagactgaagaattcgataatatt
cgaatcggtctgtcttcacctgacatgatccgttcatggtcattcggtgaagttaaaaag
cctgaaacaattaactaccgtacgttcaagcctgagcgcgacggtctgttctgtgcgcgt
atctttggtccggttaaagactacgagtgtctttgcggtaagtacaagcgcctaaagcac
cgtggtgttatctgtgagaagtgtggcgttgaagttacactgactaaagtacgtcgtgag
cgtatgggtcacatcgagctagctagcccggtagcacacatctggttccttaaatcactt
ccgtctcgtatcggcttaatgctagatatgacacttcgtgatattgaacgtgtactttac
tttgaatcgtacgtggttacagagccaggtatgactacgcttgagcgcagccagcttctt
aacgaagaagaatacttggatgcacttgaagagcacggtgatgagtttgaagcgaagatg
ggtgctgaagcagtattcgatcttcttacagcactagacgtagacgcagacgttgcggct
atgcgtgaagagctgccttcaatcaactctgaaactaagcgtaagaaaattactaagcgt
cttaagttgcttgagtcattccaacagtctggcaacaagccagagtggatgatcatgacg
gttcttccggtacttccaccagatttacgtcctctagtaccactagatggcggccgtttt
gcaacgtctgaccttaacgacctttaccgtcgtgtaattaaccgtaacaaccgtcttaag
cgtcttctagacctagctgctccagacatcatcgtacgcaacgaaaagcgtatgcttcaa
gagtctgttgatgcgctcctagataacggacgtcgtggtcgtgcgattaccggttctaac
aagcgtccacttaagtcgcttgcagacatgatcaaaggtaagcaaggtcgtttccgtcaa
aaccttcttggtaagcgtgttgactactcaggccgttctgtaattaccgttggtcctacg
ctacgtcttcaccagtgtggtcttcctaagaagatggcacttgagctatttaagccgttt
atctacggtaaacttgaaggtcgtggtcttgcgacaacaattaaagctgctaagaagctt
gtagagcgcgaagcaccagaggtttgggacgtactagacgacgttatccgcgaacacccg
gtactacttaaccgtgcacctacacttcaccgtttgggtatccaagcattcgaaccaaca
ctaatcgaaggtaaagcgattcagcttcacccgctagtgtgtgcggcgtacaacgccgac
ttcgatggtgaccaaatggcggtacacgttccgttgacaatcgaagcacagctagaagca
cgtgcacttatgatgtcaacgaacaacattctgtcacctgcgaatggtgagccaattatc
gtaccttcacaggacgttgtattgggtctttactacctaacgcgtgacaaagtaaacggc
ttaggcgaaggcatggtattcaccagcccgaatgaagcagaaaaagcataccgtacaggt
aatgctgagcttcactctcgcgttaaagtacgtattactgaatatgacatcgatgaagat
ggcaacaaaactgagaaagtaacgctaactgacactactgttggtcgtgcgattttctca
ttgatccttccaaagggtctgccgtttgaaatcatcaaccaagcgatgggcaagaagcaa
atttcaagactattgaatgcttgttaccgtacgctaggcctgaaagatacagtaattgct
gctgaccaaatcatgtataccggtttccactacgcgatgatcgcgggtgcgtctgttggt
atcgacgatatggttattcctgctgcgaagaaagacatcatcgatgcagcggaagcagaa
gttatcgaaattcaggaacagttccaaaacggtcttgttaccgcgggtgagcgttacaac
aaagttatcgatatctggtcaaatgccaacgaaaaagttgctaaggccatgatggataac
cttaagactgacatcgtaattaaccgcgatggcgaagaagaagagcaatcatcatttaac
tctgtttacatgatggccgactcgggtgctcgtggtagtgccgctcagattcgtcagcta
gctggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaaccccaattacg
gcgaacttccgtgaaggtctgaacgtactacagtacttcatctcaactcacggtgctcgt
aaaggtcttgcggataccgcacttaagacagcgaactcgggttacctaacacgtcgtcta
gtagacgttgcacaagacttggtaatcactaacgacgactgcggcacattcgaaggtgtt
caaatgacaccactaatcgaaggtggtgacgttgttgagccactacgcgagcgtgtacta
ggtcgtgtggtagcagaagatgtacttaagccaggcactaacgaagtgctagtagagcgt
aacgttcttctagacgaagcgttagtagacatgcttgaagctaactcagttgaccaaatc
atggttcgctcggtaatcacttgtgacaacgacttcggtgtttgtgctaagtgttacggt
cgtgaccttgcacgtggtcacatggtgggtagcggtgaatcggttggtgttattgcagca
cagtcaatcggtgaaccaggtacacagcttaccatgcgtacgttccacatcggtggtgcg
gcatcaagagcatctgctgagaacagcgtacaagttaagacggcgggtagccttaagcta
cacaatgcgaagttcgtacgtaactctgacggcaaagtggttatcgtttctcgttcaaca
gaacttactgttatcgacgagcaaggccgtgagaaagagcgctataaagtaccttacggt
gctgtacttagcgtggatgacggtgcaactattgcagctggcgacgttgttgctaactgg
gatccgcatagtcacccaatcatcactgaacgtgcagctaagattagcttcgcagacatt
gatgactctaacaccgaaatgcagcaagacgagcttactggtctaacccgtatcgttgtt
aaagaccttgcgaaagtaaactctaaagagcctaagctaattcttgaaagcgacgagttc
ggtcttcaagaaattcgtcttccaagcttcacaaccatcgaagcgaaagaaggcaaagtg
gctaacgaaggtgacgtgctagcacgtattcctcaagaaagctcgaagactcgtgatatc
acgggtggtctaccgcgcgttgcggacctatttgaagcacgtaagcctaaagagcctgca
atccttgcagaaatctcaggtactatcggcttcggtaaagagaccaaaggtaagaagcgt
cttgtaattacaccagctgagggtgacgcatacgaagagatgattcctaagtggcgtcag
cttaacgtattcgaaggtgagaaagtggaaaaaggcgaagttatcgctgatggtccagag
tctccgcacgatatcctacgtctacgtggtatctcagcagtagcaaactacatcgtgaac
gaagttcaggaagtataccgtctacagggtgttaagattaacgataagcacatcgaagtc
gttatccgtcagatgctacgtaagtgcattattactcacccaggcgatacgcagttcctt
gaaggcgaacaggttgaagtatcgaacgttaaagtggcgaaccgtgaaattgaaaaacac
ggcaagatcccagcgcagtacgaaacacagctgcttggtatcaccaaagcgtcactgtct
actgagtcatttatctcagcggcatcgttccaagaaacaacacgtgttctaactgaagct
gcggttcaaggtaaagaagatgacctacgcggtctgaaagaaaacgtaatcgttggtcga
ctaattccagcgggtacaggtttcgcttaccacgaacgccgtgcacaacgtcgcaaagag
caaatcgaggaaatgtcagtttctgctgctgaagcagaacaggcactaaccgaagcgctt
aatgctggtgcagacgaagatactgccgaataa
DBGET
integrated database retrieval system
