Aeromonas media: B224_4997
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Entry
B224_4997 CDS
T03075
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amed
Aeromonas media
Pathway
amed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B224_4997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amed03021
]
B224_4997
03400 DNA repair and recombination proteins [BR:
amed03400
]
B224_4997
Enzymes [BR:
amed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B224_4997
Transcription machinery [BR:
amed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B224_4997
DNA repair and recombination proteins [BR:
amed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B224_4997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Fibritin_C
Motif
Other DBs
NCBI-ProteinID:
AHX62859
LinkDB
All DBs
Position
complement(3905693..3909721)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEEILATFFETIGFEVKDGKLMMD
LVPERLRGETATFDIIANGAVVVETGRRVTARHIRQLEKDAITQIEVPVEYVVGKVAAKN
YAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETLRIDSSSSRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLGREDETGVGVL
TKDDIVEVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFELAIEDEAKQIELEQIAEQHIE
LKADFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEFGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMIKDQRELHE
MRDFLQQVYDLGEKDTQQVNIAELSDDDVRTLAGNLRKGLPVATPVFDGAKEREIKALLK
LADLPESGQISLFDGRTGNAFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgcattcgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgaatatggcctagaggccgctttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagatatcaaggaacaa
gaagtatacatgggcgaaattccgctcatgaccgagaatggcacctttgtcatcaatggt
accgaacgggttatcgtctcccagctgcaccgcagcccgggcgtcttcttcgaccacgat
aaaggcaaaacacattcatccggtaaggtactgtataacgcccgcgttatcccctaccgt
ggctcctggctggacttcgagttcgatgcgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaaactgccggcctccattattctgcgcgccctggacttcagttccgaagaaatc
ctggccaccttcttcgagaccattggtttcgaggtcaaagatggcaagttgatgatggat
ctggtgcccgagcgcctgcgtggtgagactgcgaccttcgacatcattgccaatggcgcc
gtggtggttgagaccggtcgtcgtgtcactgcccgtcatatccgtcagttggaaaaagac
gccatcacccagatcgaggtgccggtagagtacgttgttggcaaagttgcagccaagaac
tacgcgcacccgcaaactggcgaaatggtcgtgactgccaaccaggctctgagcctggaa
gcggtagccaatctgtcccaagccggcttcaagcacttcgaggttctgttcaccaacgaa
ctggatcacggtgcctacatgtccgagaccctgcgcatcgactccagctccagccgcctg
gaagctctggtcgagatctaccgcatgatgcgtccgggcgagccgcccacccgcgaagcg
gcagagcagctgttcgagaacctgttcttctcttccgagcgttacgacctgtctaccgtg
ggtcggatgaagttcaaccgccgtctgggtcgtgaagacgagaccggcgttggcgtgctg
accaaagacgacatcgtcgaagtcatgaaacgcctgatcgacatccgtaacggcaatgac
gaggtggatgatatcgaccacctgggtaaccgtcgtatccgttctgtcggtgaaatggca
gaaaaccagttccgcgtcggtctggtgcgtgtcgagcgtgcggtcaaggagcgtctctcc
ctgggcgacctggacaccctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcggtcaaagagttcttcggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtccgaagtgacccacaagcgtcgtatttccgcgctgggcccgggcggtctgacccgt
gagcgtgccggcttcgaagttcgagatgtacacccgactcactacggtcgtctgtgcccc
atcgagactccggaaggtccgaacatcggtctgatcaactcgctgtccgtgtattcccgc
accaacgagtacggtttcctcgagaccccgtaccgcaaggtcatcgacggtgtgatcacc
gacgaagtggactacctgtcagccattgaagaaggcaagtacgtgatcgcacaggccaac
gccgcgaccaccgaagatggccgtctgaaagacgagttgatcccgtgccgtcacaagggt
gaatccacctttatgaacgccgaccagatccagtacatggacgtgagcccgcaacagatc
gtatctgtggcagcggccctgatcccgttcctggaacacgatgatgctaaccgagccctg
atgggttcgaacatgcaacgtcaggccgtaccgactctgcgtgccgacaagccgctggta
ggtaccggtatggaacgcgccgtggccgttgactccggtgttaccgtagtggccaagcgt
ggcggcatgatcgactacgtcgacgcctcccgtatcgtgatcaaggtcaatgaagatgag
ctgctgcctggcgaagccggcatcgacatctacagcctgaccaagtacacccgttccaac
cagaacacctgtatcaaccagcgtccttgcgtgatgttgggtgagccggtgatggcgggc
gacgtgctggctgacggcccgtctaccgacctgggcgaactggcgctgggccaaaacctg
cgcgtcgcctttatgccgtggaacggttacaacttcgaagactcgatcctggtgaatgag
cgcgtggtacaggaagatcgcctgaccaccatccacatccaggaactggcctgtatctcc
cgtgacaccaagctgggtccggaagagatcactgccgacatcccgaacgtgggtgaagcc
gctctgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggcggc
gacatcctggtcggcaaggtaacacccaagggtgaaacccagctgacgccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcctccgatgtgaaggactcctccctgcgtgtg
ccgaacggtgtgtacggtaccgtggttgacgtgcaagtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagttgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcatcttcggccgctcccgcaacctgctgctg
gccgccggttacagcgaagatcgtctgaacaagctggatcgttccaagtggtttgaattg
gccatcgaagatgaagccaagcagatcgagctggagcagatcgccgaacagcacatcgag
ctgaaagccgacttcgacaagaagttcgagaacaaacgtcgcaagattatccagggtgat
gatctggcgccgggcgtactgaaaatcgtcaaggtttacctggcagtcaagcgtcgcatc
caaccgggtgacaagatggcgggccgtcacggtaacaagggtgttatctccaagatctgt
ccggtcgaggacatgccccatgacgagttcggccgtccggtcgacatcgtactgaacccg
ttgggtgtaccgtcccgtatgaacatcggtcagatcctcgaagtgcacctgggcctcgcg
gccaagggtataggcgagaagatcgaccgcatgatcaaggatcagcgcgagctgcacgag
atgcgtgacttcctgcaacaggtctacgacctgggcgagaaagacacccagcaagtgaac
atcgccgagctgtctgatgacgacgtacgtacccttgcgggtaacctgcgtaagggtctg
ccggttgctacacctgtctttgatggtgccaaagagcgcgaaatcaaggccttgctgaag
ctggccgatctgccggaatccggtcagatctccctgttcgacggtcgtaccggcaacgcc
ttcgagcgcaaggtcaccgtgggttacatgtacatgctgaagctgaaccacttggtagac
gacaagatgcacgcgcgttctaccggctcctacagcctggttacccagcagccgctgggt
ggtaaggcacagttcggtggtcagcggttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggaaatgctgaccgtcaagtctgacgatgtgaatggc
cgtaccaagatgtacaagaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtactgttgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa
DBGET
integrated database retrieval system
