Astyanax mexicanus (Mexican tetra): 103025275
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Entry
103025275 CDS
T05042
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103025275 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103025275 (tardbp)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
103025275 (tardbp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
RRM_3
Motif
Other DBs
NCBI-GeneID:
103025275
NCBI-ProteinID:
XP_007246850
Ensembl:
ENSAMXG00000013173
UniProt:
A0A8B9HYQ2
A0A3B1JA12
LinkDB
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Position
15:7408996..7415078
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AA seq
400 aa
AA seq
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MTECYIRVAEDENEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPDADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGIQKTSDLIVLGLPWKTSEQD
LKDYFSTFGEVIMVQVKRDVKTGNSKGFGFVRFTDYETQIKVMSQRHMIDGRWCDCKLPN
SKYFLEQAGPDEPMRSRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAQSLCGEDLIIKGTSVHISNAEPKHNNSRQMMDRGRFGGFGQGFGSSRSPNSSVN
FGALSLNPAMMAAAQAALQSSWGMMGMLASQQGQTAASGTTAAGQTSGSRDQNQSYSTSG
SYNTTSSASLGWGAGTNSASSSGFNSGFGSSMETKSSWGM
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtgctatattcgcgtagctgaggatgagaatgaggagccgatggaaatcccg
tcggaggaggacggaaccgtgctgctctccaccgtagcagcgcagttcccgggcgcctgc
ggcctacgctaccggagccctgtctcccagtgcatgcggggggtgcgcctggtggaaggc
gtgctgcacgccccggacgcagactggggcaacctggtgtacgtggtgaattatcctaaa
gataataaaagaaagatggatgagatggatgctgcttctgctgtgaagattaagagaggc
attcagaaaacctcagatttgattgttcttggtttaccgtggaaaacatctgaacaggac
ctgaaagattatttcagcacttttggagaggtcataatggtacaggttaaaagagatgtg
aaaactggaaattccaaaggatttggctttgtgagatttacagattacgagacacaaatt
aaagtcatgtctcagcggcatatgattgatggaaggtggtgtgactgtaagctccctaac
tcaaagtatttcctggaacaggctgggccggatgagcctatgcggagtaggaaagtgttt
gtgggtcgttgtactgaggacatgactgctgatgacctcaggcaattctttatgcagtat
ggcgaagtcacagacgtcttcattcctaagcctttccgggcatttgcttttgtcactttt
gctgatgaccaggttgcccaatccctgtgtggtgaggacctgatcataaagggcaccagc
gtgcacatctccaacgcagagcctaagcataataatagtaggcaaatgatggatcgtggt
cgttttggggggtttgggcagggctttggtagtagtcgcagtcccaacagcagtgtgaat
tttggggctcttagtctcaacccagccatgatggcagctgcacaggcagccctccagagt
agttggggtatgatgggcatgctggccagtcagcagggtcagactgctgcctctggcacc
actgctgctggccagacaagtggcagtagagatcagaaccagagctatagcacgagtggt
agctataacaccaccagctctgccagtctcggttggggtgcgggcactaattcggcctct
agcagtgggttcaactcgggctttgggtccagtatggagaccaagtctagttggggaatg
tag
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