Astyanax mexicanus (Mexican tetra): 103032033
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Entry
103032033 CDS
T05042
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103032033 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amex03019
]
103032033 (cnot1)
Messenger RNA biogenesis [BR:
amex03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103032033 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103032033 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
103032033
NCBI-ProteinID:
XP_015457163
Ensembl:
ENSAMXG00000013170
UniProt:
W5L162
LinkDB
All DBs
Position
10:complement(4127372..4149937)
Genome browser
AA seq
2368 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFPQLSKVLK
LSKVQEVIFGLALLNSSNSDLRGFAAQFVKQKLPDLLRSYVDADLGGSQEGGFQDIAIEA
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASVDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIALQSISAPGSGIWSDGKDKSDGSQPHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQQSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPTIMGGLAPEKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVDPLTAMGSLSL
GSSAPSHSQNMQGFPTPLGSAFSNPQSPAKAFPPLTNPNPSTAFGSISGLSSQLPGPLGS
GSLSGIGSGLGMPAVSSDPFGPRKMSTPGLNPPTFQHSDLSHVWPEANQHFSKEIDDEAN
SYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPDKE
LHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRVKDYP
QYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQPPKP
PQPGQASTLVTTTTTTTTVAKTSTISRPTAVGFKKDVPPSINTTNIDTLLVATDQTERIV
EPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLY
SNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKP
ILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVVFRPQNPWTMAIMNVLAEL
HQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLEEQLSAPKKEAKPPEEL
LPIVTTAATSAPAATATTATTGPPTPQFSYHDINVYALAGLAPHININANIPLLQAHPQL
KQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAHHMMRNLT
AGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQK
TAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVGGVDPKQL
AVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDMAHIYDKCISDLEQHLHAIPP
ALAMNPQAQALRSLLEAVVMARNSRDGITALGLLQKAVEGLLDATSGADADLLLSYRECH
LLVLKALQDSRAYGPQWCNKQITRCLMECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQ
SMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTCAHSRANAPEGLPQ
LMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAA
GRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAII
RAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQL
PYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFI
ARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPE
FLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNF
TGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIA
HIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTM
LYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPE
IEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7107 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaagaaatacagcatattgtgaatcgtcacggc
cctgaggcagacaggcatctattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtgggaaagatttccaccagacacagtttctgatccaggagtgtgtgtca
cttatcacaaagccaaattttatttcgactctctgctacgccattgacaatcctctgcac
tatcagaagagtttgaagccatcaccgcacttgtttcctcaactgagtaaagttctcaag
ctaagcaaggttcaggaggtaatttttggccttgctcttctgaactccagtaactcagac
ctccgaggattcgctgctcagtttgtgaaacagaagctgccagaccttctgcgctcatac
gtggacgcggacctcggagggagccaggaaggtggcttccaggacattgccatagaggct
ctgcacctgctgctctcacacctcctgtttgggcaaaagggttccagtggagtcgggcag
gagcagatcgacgcctttctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgagaaacgggacattctcatggacaggatcctg
ccagactctggagagttagccaagaccatgatggagagttcccttgcggagtttatgcaa
gaagttggctatggcttttgtgcaagtgttgatgaatgcaggaacataatcctgcagtat
ggggttcgagaggtgactgcaagtcaagtggccagagtgctgggcatgatggcccgtacg
cactctggcctttcagatggaatcgctctacagtccatctctgctccaggcagtggcatc
tggagtgatgggaaggacaaaagtgatggctctcagccccacacctggaatgtagaagtt
ctgattgatgttgttaaggaacttaaccccaatctgaatttcaaagaggtcacctatgaa
ctagaccatccaggttttatgatccgggacagtaaggggctgcagatggtagtatatggg
attcagaggggacttggtatggaggtcttccctgtagatctcatctacagaccgtggaaa
catgcagagggccagctctccttcatccagcagtccctaatgagtccagaggtgttctgc
tttgctgattacccctgtcacacagttgccatcgacatcctcaaagctccacctgaggat
gacaacagggaaatcgcaacatggaagagcctggacctggtggagagtctattgcggctc
tctgaggttggccagtatgagcaggttaagcagctcttcagcttccccatcaagcactgc
ccggacatgcttgtgttggctttactgcagatcagcacgtcctggcacacgctgcgtcat
gagctcatttctaccctcatgcccatcttcctgggcaaccaccccaactcggccatcatc
ctgcattatgcttggcatgggcagggtcagtcaccctctattcgccagctcatcatgcac
tctatggcagagtggtatatgaggggggagcagtacgaccaggccaagctctcgcgcatc
ctggacgtagctcaggacttgaagtctctctcgatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctcacgccgtgaatacctcaaactagacaaatgg
ctgactgataaaatcagagagcatggggagcccttcatccaggcatgcgtgaccttcttg
aagaggcgctgtcccaccatcatgggaggtttggccccggaaaaagaccagccgaaaagc
gcacagctgcctcctgaaaccctggccaccatgctagcttgtctgcagtcttgtgcaggg
agtgtgtctcaagagctatccgagacaatcttgaccatggtggccaactgtagcaacgtg
atgaacaaggcccgtcagcctccaccaggggtcatgccaaagggtcgggctcctagcacc
agcagcctggatgccatctctccggtggaccctctcactgcgatgggctctttgagtctc
ggcagctcggctccctcccactcacagaacatgcaaggcttccccacgcctttgggatca
gcttttagcaacccccagtctcctgccaaggcttttcctccccttaccaaccccaacccc
agcacagcctttgggagcatcagcggcctctcatcccaactcccaggtccattgggttca
ggcagcttgagtgggattggttcaggtctgggcatgccagcagtgagcagtgacccgttt
ggcccaaggaagatgagcacaccagggctaaacccacccaccttccagcattctgacctc
tctcacgtatggcccgaagcaaaccagcactttagtaaagagattgacgatgaggccaac
agttacttccaacgcatctacaaccacccacctcaccccaccatgtctgtagacgaggta
ctggagatgctgcagaggtttaaggactcgaacatcaagcgggaacgggaggtgtttaac
tgcatgctgcgcaacctgtttgaggagtaccgcttcttccctcagtatccagacaaagag
ctgcacatcaccgcctgcctgtttggaggaatcatagagaagggcttagtcacctacatg
gctcttgggcttgccttgcgttacgttctggaggcattgcgcaaaccatatggctcaaaa
atgtattactttgggattgctgcactggatcggtttaagaacagagtgaaggattatcca
cagtattgccaacacttggcatctattggccattttctgcagtttcctcatcatttgcaa
gagtatattgagtatggtcagcagtcacgtgaccctccagtgaagatgcagggctcaata
accactccaggcagccttgcattggcccaggctcaagcccagtcacagcctcccaaaccc
cctcagcctgggcaggccagcaccctggtgactactacaaccaccaccaccacggtcgcc
aaaacctccaccatctccaggcccactgcagtaggttttaagaaggatgtgccaccctcc
attaacaccacaaacatcgacacgctgcttgtcgcaacagaccagactgagaggattgtg
gagcctccagagaacgtgcaggagaagatagctttcattttcaacaacctttcccaatcg
aatatgtctcaaaaggttgaagagctgaaggagactgtgaaggaggagttcatgccctgg
gtgtctcaatacctggtcatgaaacgagtcagcattgagcccaacttccatagcctctac
tcaaatttcctggacacactgaaaaaccctgagtttgtcaaaatggttctaaatgagaca
tacaggaatattaaggttcttttaacctctgacaaggcagctgctaatttttctgatcga
tccctgctgaagaatttgggccattggcttggcatgatcaccctggctaagaacaaaccc
atcctctatactgatttggaagtaaagtctctgttactggaagcctatgtgaaaggccag
caagagctgctttatgtggtcccgtttgtggccaaagtcctggagtcaagtctacgcagc
gtggtcttcaggccacagaacccctggaccatggccatcatgaatgtactggctgagctt
caccaggaacatgatctaaagctaaatctgaagtttgagattgaggtattgtgcaagaac
ctgtctctggacattaatgacctgaagccaggcaacctgctgaaggacaaagagaaactg
aagaatctggaggagcagctgtctgcaccaaagaaagaggccaagcctcctgaagaattg
ctgccaatagtgactacagcagccacatctgctcctgctgctacagcgaccactgcaact
acaggaccacccaccccacagttcagctatcatgacatcaacgtgtacgccctggcaggc
ctggcccctcacatcaacatcaatgctaatatccccctgctgcaggcgcatccccagctg
aagcagtgtgtgaggcaggcaatcgagcgtgctgtccaagagcttgttcacccagtggtt
gaccgctcaatcaagattgccatgaccacatgtgagcagattgtcaggaaggactttgct
ctggattcggaggagtcacacatgcgcgtcgctgctcaccacatgatgcgcaacctgact
gctgggatggccatgatcacctgcagagagccactactgatgagcatcgccaccaatctg
aagaacagctttgctgctgcccttagggcacccacacctcagcagcgggaaatgatggag
gaggcagctgcccgtattgctcaggacaactgtgaactggcctgctgcttcattcagaag
accgctgtggaaaaagctggccctgagatggacaagaggcttgccacggagtttgagcta
aggaagcatgctcgtcaggagggcagacgctactgtgaccccatggtgctcacctaccaa
gcagagcgcatgccagaacagattcgcctcaaggttggtggtgtggaccctaaacagctg
gctgtttatgaggagtttgcccgtaatgttccaggattcttgcccagcaacgacctgtct
cagcccactgggttcctggctcagcctatgaagcaacaggcatggcctacagatgacatg
gctcacatctatgataagtgcatctctgatctcgagcagcacctgcatgccatcccacca
gcactggccatgaaccctcaggcccaggctcttcgcagcctgctggaggctgtagtgatg
gctcgaaattcccgtgatggaatcactgctttgggcttgctgcagaaggctgttgaaggt
ctgctggatgccacaagtggtgctgatgctgacttgctgctgagctacagggagtgtcac
ctgctggtgctaaaggcactgcaggacagccgtgcctatgggccacagtggtgcaacaaa
caaatcaccaggtgcctgatggagtgtcgtgatgagtacaagtacaatgtggaagcagta
gagctcttgatcagaaaccacctggtcaacatgcagcaatatgacctgcaccttgcccag
tcaatggagaatgggctgcactacatggcagttgcatttgctatgcagctggtgaagctg
ctgctggtggatgagcgcagtgtgagtcacatcactgaagcagacctgtttcacactatt
gagaccctgatgaggacctgtgcacactccagagccaatgcacctgaaggcctgccccag
ctgatggacgtggtccgctccaactacgaggccatgattgaccgccaccacggtggaccc
aacttcatgatgcactctgggatctctcaggcctcagagtatgatgacccaccaggcctg
cgtgagaaagcagaatacctgctcagagagtgggtcaacctgtatcactctgctgcagct
ggcagggacagcactaaagccttttctgcttttgtgggccagatgcatcagcagggcatt
ctaaagactgacgacctgatcacccgtttcttcagactgtgtacagagatgtgcgtggag
attagctaccgtgcacaggccgagcagcagcacaaccctgctgccagtgctgccatcatc
cgcgccaagtgctaccacaacctggatgctttcgtccgactcattgcgctgctcgtcaaa
cactctggggaggccaccaacacagtcaccaagatcaacctccttaataaggtgttgggc
atcgtagtgggtgtgctgatccaggaccatgatgtgcggcagacagagttccagcaactg
ccttaccatcgcatcttcatcatgctgctgctggagcttaatgcccctgaacatgtgctg
gagaccatcaacttccagacacttactgccttctgcaacaccttccacatcctgaggcct
actaaagcacctggctttgtctatgcctggctggagctgatctcgcacagaatttttatc
gctaggatgctggcacacaccccacagcagaagggatggcccatgtatgcccagctgctg
attgatctattcaagtacctggcaccttttctgaggaatgttgagcttaataaacctatg
caaattctctacaagggcaccttgagagttcttctggtcctgctccatgatttcccagag
ttcctgtgtgactatcactatgggttctgtgatgtgattccaccaaactgcatccagctg
aggaacctgatcctgagtgccttcccccgcaacatgaggctcccagaccctttcactccc
aacctcaaggtggacatgctgagtgaaattaacattgctcctcgcatccttaccaacttc
actggtgtgatgccttctcagttcaagaaggatctggactcttacctgaagacccgctct
cctgttaccttcctttcggagctgcgaagcaacctgcaggtgtccaatgagccgggtaac
cgctacaacatccagctgatcaatgccctggtgctgtatgtgggcacacaggccatcgct
cacatccacaacaagggcagcacaccctccatgagcaccatcacgcattcggcacacatg
gacatcttccaaaaccttgctgtggacctggacactgagggtcgctatcttttcctgaac
gcgatagccaatcagctgcgttatccaaacagccacactcattacttcagctgcaccatg
ctttacctgtttgctgaagcgaatgcagaggcaattcaggagcagatcaccagggttttg
ctggagaggctaattgtaaacaggccgcacccgtggggacttcttatcacctttattgag
ctgatcaagaacccagcctttaagttctggagccatgactttgtgcactgtgccccagag
atcgagaagctgttccagtcagtggctcagtgctgcatggggcagaagcaggcccagcag
gtgatggagggcacgggtgccagttag
DBGET
integrated database retrieval system
