Actinosynnema mirum: Amir_6627
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Entry
Amir_6627 CDS
T00957
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ami
Actinosynnema mirum
Pathway
ami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Amir_6627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ami03021
]
Amir_6627
03400 DNA repair and recombination proteins [BR:
ami03400
]
Amir_6627
Enzymes [BR:
ami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Amir_6627
Transcription machinery [BR:
ami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Amir_6627
DNA repair and recombination proteins [BR:
ami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Amir_6627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
RsgI_N
Motif
Other DBs
NCBI-ProteinID:
ACU40424
UniProt:
C6WN60
LinkDB
All DBs
Position
complement(7760779..7764261)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAISRATKATAATNSTSGIPGAPKRVSFAKIHEPLQTPNLLDLQIQSFEWLTGDEAWFQR
RVDEGDEAPTGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASTEECKDKDMTYAAPL
FVTAEFTNHTTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYYDTAIDK
TTDKDVFSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSTEQIRERFS
FSETLLTTLEKDHTAGTDEALLDIYRKLRPGEPPTKESAQALLETLFFKEKRYDLAKVGR
YKVNKKLGLDTPISTGVLTEDDIVTTIEYLVRLHAGETSMQPGETEVPVEVDDIDHFGNR
RLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQL
SQFMDQTNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPEGPNIGL
IGSLSSYGRVNPFGFIETPYRKVVDGRVTDQIDYLTADEEDRYVKAQANARIDGEGNFLE
GKVLVRKKGGEVEMIDPRDVDYMDVSPRQMVSAATAMIPFLEHDDANRALMGANMQRQAV
PLLRSESPLVGTGMELRAAVDAGDVVVAKKTGVVEEISADYVTVMADDGSRQTYGMHKFR
RSNQGTCINQKPIVNEGDQVKVGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYEDAII
LSQRLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIIRIGAEV
QPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEYGKVIGIRVFSRE
DDDELPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPVEDMPFLEDGTPVDIV
LNTHGVPRRMNIGQVLETHLGWIAKQGWSINGDPDWAKNLPADLYEVDPGTKTATPVFDG
AREEEITGLLGSTVPNRDGERMVKENGKAQLFDGRSGEPYPFPVSVGYMYILKLLHLVDD
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDVLGR
VKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERAA
ANLGINLSRSESPSVDDVVN
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggcgatctctcgcgcgaccaaggccactgctgcgaccaactccacgtcggggatccct
ggagcgccgaagcgggtttcgtttgcgaagatccacgagccgctccagacgcccaacctg
ctcgacctccagatccagtcgttcgagtggctcaccggcgacgaggcgtggttccagcgc
cgagtcgacgagggcgacgaggcgccgacgggcggcctcgaagaggtcctgaacgagatc
tcccccatcgaggacttctccggctcgatgtccctgtccttctccgatccgcgcttcgac
gaggtcaaggcctcgaccgaggagtgcaaggacaaggacatgacgtacgcggccccgctg
ttcgtcaccgcggagttcaccaaccacaccactggcgagatcaagagccagacggtgttc
atgggtgacttcccgatgatgacggacaagggcacgttcatcatcaacggcaccgagcgg
gtcgtcgtgtcccagctcgtccgttcccccggcgtctactacgacaccgcgatcgacaag
acgaccgacaaggacgtcttctcggtcaagatcatcccttccaggggcgcgtggctggag
ttcgacgtcgacaagcgcgacaccgtgggtgtccgcatcgaccgcaagcgccgccagccg
gtcaccgtgctgctcaaggccctcggctggagcaccgagcagatccgcgagcgcttctcc
ttcagcgagacgctgctgacgaccctggagaaggaccacacggcgggcaccgacgaggcc
ctgctcgacatctaccgcaagctgcgccccggcgagcccccgacgaaggagtccgcccag
gccctgctggagacgctcttcttcaaggagaagcgctacgacctcgccaaggtcggccgg
tacaaggtcaacaagaagctgggcctggacaccccgatcagcaccggcgtgctgaccgag
gacgacatcgtcacgacgatcgagtacctggtccgcctgcacgccggtgagaccagcatg
cagccgggcgagaccgaggtgccggtcgaggtcgacgacatcgaccacttcggcaaccgc
cgcctgcgcaccgtcggcgagctgatccagaaccagatccgggtcggcctctcccgcatg
gagcgcgtcgtgcgcgagcgcatgacgacccaggacgtcgaggcgatcacgccgcagacc
ctgatcaacatccgtcccgtcgtggcggcgatcaaggagttcttcggcacgtcccagctc
tcgcagttcatggaccagaccaacccgctggccggtctgacccacaagcgccgcctctcg
gcgctgggccccggtggtctgtcgcgcgagcgcgccggcatggaggtccgcgacgtccac
ccgtcgcactacggccgcatgtgccccatcgagacccctgaaggcccgaacatcggcctg
atcggctcgctgtcctcctacgggcgggtcaacccgttcggcttcatcgagacgccgtac
cgcaaggtcgtcgacggccgggtcaccgaccagatcgactacctgaccgcggacgaggag
gaccggtacgtcaaggcccaggcgaacgccaggatcgacggggagggcaacttcctcgag
ggcaaggtcctggtccgcaagaagggcggcgaggtcgagatgatcgacccgcgcgacgtc
gactacatggacgtctcgccccgccagatggtctcggccgcgacggcgatgatccccttc
ctggagcacgacgacgcgaaccgcgccctgatgggcgcgaacatgcagcgccaggcggtg
ccgctgctgcgcagcgagtccccgctggtcggcaccggcatggagctgcgcgccgcggtc
gacgccggtgacgtcgtggtggccaagaagaccggcgtggtggaggagatctccgccgac
tacgtcacggtcatggccgacgacggctcccgccagacctacgggatgcacaagttccgc
cgctcgaaccagggcacctgcatcaaccagaagcccatcgtgaacgagggcgaccaggtg
aaggtgggccaggtcctcgcggacggcccgtgcaccgagaacggcgagatggccctgggc
aagaacctgctcgtggcgatcatgccgtgggagggccacaactacgaggacgcgatcatc
ctgtcgcagcgcctcgtgcaggacgacgtcctgacctcgatccacatcgaggagcacgag
atcgacgcccgcgacaccaagctgggcgccgaggagatcacgcgggacatcccgaacgtc
tccgaggaggtcctggccgacctggacgagcgcggcatcatccgcatcggcgccgaggtc
cagccgggcgacatcctcgtcggcaaggtcacgcccaagggcgagaccgagctgaccccc
gaggagcggctgctccgcgcgatcttcggcgagaaggcgcgcgaggtccgcgacacctcg
ctcaaggtgccgcacggcgagtacggcaaggtcatcggcatccgcgtgttcagccgcgag
gacgacgacgagctgccccccggcgtgaacgagctggtccgcgtgtacgtggcccagaag
cgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggcgtcatcggc
aagatcctccccgtcgaggacatgcccttcctggaggacggcaccccggtcgacatcgtg
ctgaacacgcacggcgtcccgcgtcgtatgaacatcggccaggtcctggagacccacctc
gggtggatcgccaagcagggctggagcatcaacggcgacccggactgggcgaagaacctg
cccgccgacctctacgaggtcgaccccggcaccaagaccgccacgcccgtcttcgacggc
gcgcgcgaggaggagatcacgggcctgctgggctcgacggtcccgaaccgcgacggcgag
cgcatggtcaaggagaacggcaaggcgcagctcttcgacgggcgcagcggcgagccgtac
cccttccccgtgtcggtcggctacatgtacatcctgaagctgctgcacctggtggacgac
aagatccacgcgcgttccaccggcccgtactcgatgatcacgcagcagccgctgggtggt
aaggcgcagttcggtggtcagcgcttcggtgagatggagtgctgggcgatgcaggcgtac
ggcgccgcctacaccctgcaggagctgctcaccatcaagtccgacgacgtgctcggccgc
gtgaaggtctacgaggccatcgtcaagggcgagaacatcccggagccgggcatcccggag
tccttcaaggtgctgctcaaggagctccagtcgctgtgcctcaacgtcgaggtgctgtcc
tcggacggcgccgcgatcgagatgcgcgacggcgacgacgaagacctggagcgcgcggcc
gcgaacctcggcatcaacctgtcgcggtccgagtcgccgtccgtggacgacgtcgtcaac
tga
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