Aminobacterium sp. MB27-C1: RBH88_02840
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Entry
RBH88_02840 CDS
T09908
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
amiz
Aminobacterium sp. MB27-C1
Pathway
amiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBH88_02840 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amiz03019
]
RBH88_02840 (rny)
Messenger RNA biogenesis [BR:
amiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBH88_02840 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
KH_KhpA-B
KH_PNO1_2nd
TMP_3
KH_NusA_2nd
KH_2
HXXSHH
Tox-ODYAM1
Motif
Other DBs
NCBI-ProteinID:
WMI72053
LinkDB
All DBs
Position
588252..589793
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AA seq
513 aa
AA seq
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MQMMTAIIGIAAGLAAGVAAGFMLSKTIGAKHLENAKLRAETILKEALQEGEQRKREKLA
EAREEAYKLRQEVERESKERRLELQRAERRLEQKEENLDKKMDRIGHKEEELRQRKDDIE
KQSAEVELVRQEQVKRLEEIAQMSREEARQILLKETEDDMQHDLGMLMKDLEERTRREAE
KKGKEVLATAIQRCAVEQTSEVAVSVVPLPSDEMKGRIIGREGRNIRSFETLTGVDLIVD
DTPEAVTLSSFDPVRREVARLSLERLVADGRIHPARIEELVEKATKDVDEQILEAGETAL
LETGVKNMHDELIRLIGQLRYRYSYGQNALQHSLEVSHLSGIIAAELGVDEELARRAGLL
HDIGKAVDHQIEGPHALIGADLAKRYGESPEIINAIAAHHEDVEQQSVFDVIVAAADAVS
ASRPGARRESLDAYIRRLEKLEEVAKSFKGVSKAFAIQAGREVRVVVSPNVTDEGVVYKI
AYDIARKIEEEMKYPGQIKVTVTREVRATEYAK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatgatgactgctattataggaatagctgctggccttgctgctggagttgcagca
gggttcatgctttcaaagactattggagccaaacatcttgaaaatgccaaattacgagca
gaaacaattcttaaagaggctcttcaagagggggaacagcgtaaacgggagaagttggcg
gaggctcgcgaagaagcgtataaacttcgtcaggaagttgaacgggaaagtaaggagcgt
cgcttggaacttcaaagagcagaacgacgccttgagcaaaaagaagaaaatcttgataaa
aagatggaccggattggtcacaaagaggaagaacttcgtcaacgtaaagacgatatagag
aaacagtctgccgaggtagagcttgttcgacaggaacaggttaaacgccttgaagagatt
gctcaaatgtcgagagaagaggcccgtcagattcttcttaaagagacagaagacgatatg
cagcatgatttgggcatgcttatgaaagatttagaggaacgaacgcggcgagaagcggag
aaaaaggggaaagaagttcttgcgacggctatccaacgttgtgctgttgaacagacatcg
gaagtcgccgtgagtgtcgtgcctctgccttctgatgaaatgaagggacgtattattggc
cgtgaaggacgaaatattcgttcctttgaaaccttgacaggcgtagatcttattgttgat
gacacgccagaagctgtgactttgagcagttttgatcctgtacgaagagaggttgcacgt
ctttctctcgaaagacttgttgccgatggaaggattcatcctgcccggatcgaagaactg
gtggaaaaggcaacaaaagatgttgatgagcagatacttgaagctggagaaaccgccctt
ttggaaacaggcgttaaaaatatgcacgatgagcttattcgccttataggtcaattgcga
tatcgatatagctacggacaaaatgccttacagcatagccttgaagtatcacacttatcg
ggtattatcgctgctgaattgggtgttgatgaggagttggccagacgagccggtttgttg
catgatatagggaaggctgtggaccatcagatagaggggcctcacgcccttatcggagca
gacttggcgaaacggtatggcgaatctccagaaatcataaatgctatcgcggcacatcat
gaagatgtagagcagcagtcggtgtttgacgttattgttgctgctgcagatgctgtgagc
gcatctcgtccgggagctagaagagaaagccttgacgcatatatacgcagactcgaaaag
ctggaggaagtagcgaaatctttcaagggagtaagtaaagcattcgctatacaggctgga
cgtgaagttcgcgttgtggtctctcccaatgtgacggatgaaggcgttgtttataaaata
gcctatgatatcgcccgtaagatcgaagaagagatgaaatatccaggtcagatcaaagtc
acggtaacacgtgaggttcgggcaacagaatatgcgaagtag
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