Alligator mississippiensis (American alligator): 102558702
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Entry
102558702 CDS
T03087
Symbol
COL9A1
Name
(RefSeq) collagen type IX alpha 1 chain
KO
K08131
collagen type IX alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102558702 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102558702 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102558702 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
amj00535
]
102558702 (COL9A1)
Proteoglycans [BR:
amj00535
]
Extracellular matrix (ECM) proteoglycans
Others
102558702 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102558702
NCBI-ProteinID:
XP_006263216
LinkDB
All DBs
Position
Un
AA seq
921 aa
AA seq
DB search
MKSNWHLPPFLYMCSFLGSLVSATIQHQTRFPVTFASNQKTDLCPTIRIGQDDLPGYDLI
SQFQIDKAASQGVIQRVVGSTALQVAYKFGSNVDFRIPTRALYPNGLPDEYSFLTTFRMT
GSTLQKYWSIWQVQDSSGKEQVGVKLNGPAKSIEFSYTGLDGSLQTANFLHLPFLFDSQW
HKLMISVEKTSVTLFIDCLKVESLNIKPKGKINTDGFAVLGKLNNNPKISVPFELQWMLI
HCDPLRPQRETCSELSSRTWISQTAVVRGPPGPPGPRGPPGPPGVPGIDGIDGDRGPDGP
PGPPGPDGAAGKAGGPGLPGEPGADGLTGPDGSSGPSGRKGQKGEPGLPGAHGLPGKGII
GSAGPPGAAGLPGEVGRVGPPGEPGKRGLPGLPGPPGQRGTIGLHDGDPLCPNACSPGRP
GHAGLSGMKGHKGAKGEPGEPGRQGHKGEEGDQGILGDVGSQGPPGPPGSRGMIGIMGPK
GDKGARGLDGDPGPRGLPGAPGDQGQRGSLGELGPKGDRGPPGPRGITGLPGPKGQPGLP
GVDGREGIPGMPGAKGEPGKPGSPGDAGLQGLPGLPGFPGAKGVSGPKGNRGPPGVPGLM
GNSGKPGEQGVAGAVGPIGPRGPPGGRGDPGPAGPPGPPGKRGSEGDIGLPGLPGPPGLL
GVKGDRGTVGEPGPKGEQGTAGSEGEPGGRGDLGDMGLLGPKGSAGNPGEPGSRGPEGSR
GLPGMEGPRGSPGPRGMQGEQGAPGLPGSQGPTGREPTDQHIKQVCMRVMQEQLAQLAAS
LRRPEFGATGLPGTPGPPGAPGPAGENGFPGQLGPRGLPGLKGPPGEIGRKGPKGDAGEK
GDRGFPGRGPKGLPGTTGLPGEPGKPSYGREGRDGLRGPPGIAGQPGVPGPPGPPGPPGY
CEPSSCTMQAGQRAGKNVKGP
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaactggcatcttccacctttcttgtacatgtgtagttttctggggtctttg
gtgtcagctaccattcagcatcaaacaagatttccagtcacctttgcttctaaccaaaag
actgatctctgcccaacaatcaggattggccaagatgacttgccaggttatgacctgatt
tctcagttccagatagataaagctgcctcccaaggagttatccagagagtggtaggctcc
acagctttacaggtggcttataaatttggcagcaatgtcgacttcaggatcccaaccagg
gctttgtatcccaacggattgcctgatgaatattcctttctaactacttttcggatgact
ggaagcacacttcagaaatactggagtatttggcaggttcaggattcttcaggaaaagaa
caagttggagtgaagcttaatggtccagctaagagcattgagttttcttatacaggactg
gatggaagtctccagactgcaaactttttgcatttgccttttctgtttgattcccaatgg
cacaagcttatgatcagtgtggagaagaccagtgtcactctttttattgactgccttaag
gtagaatccttaaacataaaaccaaagggcaaaatcaacactgatggctttgctgtgctg
ggaaaacttaacaacaatcctaaaatttcagttccgtttgaactccaatggatgctgatt
cactgtgaccctctgcgaccacaaagagaaacatgcagtgaactttcatcccggacctgg
ataagccagacggccgtggtgagaggccccccgggcccgcccggcccccgcggcccgccc
ggcccgcccggcgtccccggcatcgacggcatcgacggagaccgaggtcccgacggcccc
cccggcccgccggggccggacggggcggcggggaaggcgggcggcccgggcctgccggga
gagccgggagccgacggactgacaggacctgatggatcatctggcccatctggtcgaaaa
ggacaaaagggtgaacctggattgcctggagctcatgggcttccaggtaagggaattatt
ggatcagctggtccccctggtgcagcaggacttcctggtgaagttggccgtgttggtcca
ccaggtgaacctgggaagagaggactaccaggcctaccaggaccaccaggccaaagggga
acaattgggctacatgatggagatccactgtgtcccaatgcttgttcacctggtcgtcca
ggacatgctggcctgtcagggatgaagggtcataaaggtgcaaaaggagagcctggtgaa
ccaggaagacagggtcataagggtgaggaaggagaccaaggaatcctaggtgatgtggga
agtcaaggccctccaggccctccaggttcaagaggtatgattggtataatgggaccgaaa
ggtgacaagggtgctcgtgggctggatggtgacccgggtccccgaggtctccctggtgct
cctggtgaccaaggacagagaggttctcttggagagttaggtccaaagggagacagaggc
cctcctggtccaagaggaataactggtctccctgggccaaaaggacaacctggcttgcca
ggagttgatggccgggaagggatccctggaatgcctggagcaaagggtgaaccaggaaaa
cctggctctccaggggatgcaggacttcagggactgccaggtttacctggatttccaggt
gcaaaaggtgtttctggaccaaagggtaatagaggaccccctggagtaccaggtttgatg
ggaaattctggtaaacctggagaacaaggggtagcaggggcagtgggaccaataggacca
aggggaccaccaggtggtagaggtgatccaggtcctgctggtcctccaggaccaccaggg
aaacggggctctgaaggggatataggacttccaggactccctggtcctccaggcctcctt
ggtgttaaaggtgacaggggcacagttggtgagccaggtcctaaaggtgaacaaggtact
gctggatccgaaggagaaccaggaggaaggggtgacctgggtgatatgggactgctgggc
ccaaagggatctgctggtaaccctggagaacctggttctcgggggcctgaaggaagtcgt
ggattgcctggcatggaagggccacgtggatcacctggacctcgtggtatgcagggtgag
caaggtgctccgggactgcctggcagccagggtccaaccggtagagagccaacagatcag
cacatcaagcaggtttgcatgagagtcatgcaagaacaactggctcagctggcagccagt
cttaggaggcctgaatttggtgctacaggtcttccaggtacacctggaccacctggtgct
cctggacctgctggagaaaatggcttcccaggacagcttggacctcgtggtctaccaggt
ctcaaaggacctcctggtgagattggtcgcaaaggtccaaaaggtgatgctggtgaaaag
ggggacagaggatttcctggcagaggacccaaaggcttacctggaacaacaggccttcca
ggtgaaccaggcaaacccagctacggtagggaaggacgtgatgggctacgaggcccacca
ggtatagctggtcagcctggagttcctggtcctccaggtcctcctggtcctccaggatat
tgtgagccatcatcttgcacaatgcaagctggacagagagctggtaagaatgtgaaaggg
ccatga
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