KEGG   Alligator mississippiensis (American alligator): 102560574
Entry
102560574         CDS       T03087                                 
Symbol
BLM
Name
(RefSeq) Bloom syndrome RecQ like helicase
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
amj  Alligator mississippiensis (American alligator)
Pathway
amj03440  Homologous recombination
amj03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:amj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    102560574 (BLM)
   03460 Fanconi anemia pathway
    102560574 (BLM)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:amj03032]
    102560574 (BLM)
   03400 DNA repair and recombination proteins [BR:amj03400]
    102560574 (BLM)
Enzymes [BR:amj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     102560574 (BLM)
DNA replication proteins [BR:amj03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    102560574 (BLM)
DNA repair and recombination proteins [BR:amj03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     102560574 (BLM)
    Bloom's syndrome complex (BTR)
     102560574 (BLM)
   FA (Fanconi anemia) pathway
     102560574 (BLM)
SSDB
Motif
Pfam: BLM_N DEAD BDHCT RecQ_Zn_bind Helicase_C BDHCT_assoc HRDC RQC ResIII
Other DBs
NCBI-GeneID: 102560574
NCBI-ProteinID: XP_014456640
LinkDB
Position
Un
AA seq 1467 aa
MATIPQNNLQKQLELHSAKGACSKLSLPKHKPAGFTFKKKTLGNAVSVGLSGATNVSALK
EKDVNTSLNKPIASLPASKDKQIKINDIFVQASKEQEIQQLCEDQVSTTSLGCLQQISND
LPAPAKKNVSSEPCDTPFQKVDYSCSADSVITIEDDWDDIDDFDLSAKQKSYSKPLVLSP
KSQIVKTSKTLQISNSPTNRLSRASRTVSREQGLSKPCPSENGVKLQSDRLPDLSESSLI
YIDLLPDDSIPNNRKKTLCEDLQEELSAETILDDKKEETCTADRKKQNNGKVPLGEDEED
SQSLKDLDKGWVETLATTGLDEDDDYLDIIPPSPEEVSCISAPKKTNSFLKESTVEGKPT
VNTTWSEPKKTTAKQPSNGTSTENADKCLPWEQQLYNVMENICKLVDAVPIHELKSLSCG
NDLLWQRDCRRKLLTNCTDASKSGADILLATTWKPCPGRDTCMSDDVLLPLGQKSILSPE
GNSFKFTKFSSPPSGAVNKSFLCTEKFHTLDTLDTSDALQHIAPNTNIRENTGFCFSKLD
SRERTSLSFGNDVSPLNRSWCEKPGMEKTASWHLSKVPVTSTALKAQNHFSAGTNGKAGD
HAETTRDIDFELDNFDIDDFDEDWDNPLNDSVPDQPLYHPIREGQPTKSLSKPSFTAKGI
NHGSNPAVSKPNSFMSSRNCSDPLLRNPALDRFRGFTFSHSEEMLNVFHKKFGLHSFRTN
QLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVISPLRSLIVDQVQKLNTLD
ISATYLTGDRTDGDASKIYVQLSKKDPVIKLLYVTPEKVCASGRLISALENLYERRLLAR
FIIDEAHCVSQWGHDFRPDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLQPQ
VFTMSFNRHNLKYDVLPKKPKSVAKDCLEWIKKHHPYDSGIVYCLSRHECDSTARILKDG
GLAALAYHAGLRDAERDLVQKKWINQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVE
GYYQESGRAGRDGETSHCLLFYSYSDVNRLRRLILMERDGNSHTKQTHFNNLYSMVHYCE
NVVECRRIQLLAYFGETSFNPNFCKEHPEATCDNCSREKDYKSRNVTDDVKSIVRFVQEH
CGQGGGGRRSAGNRGSGRYTLNMMTDIFLGVKSAKIQTGIFGKGAAYSRHNAERLFRKLV
LDKILDEDLYITANDQAVSYVIVGERAQAVLNGCLEVQFHETESASSLRKQRASVAKMSE
REEMVKKCLVELTDMCKTLGKIFDVHYFNIFNTSTLKRIAETLSSDTEVLLQIDGVTEDK
LEKYGAEIIKVMQKYSDWTLPEEDYATAGKGPGSAGMLESDEESEGTGTTSSYFNNKTNK
GKRRKRFPPFKQAKKKKTSQGGGQQSYSKGGGSKYKKTFNSKASAAPSYSSSTYGATAVP
GLSRKLGIMAPPKPQNRQFLKPSYSLL
NT seq 4404 nt   +upstreamnt  +downstreamnt
atggctactattccccaaaacaacctccagaagcagttagagcttcattcagcaaaaggg
gcctgcagtaaactaagtcttccaaaacacaaaccagctggtttcactttcaaaaagaaa
actctcggtaatgctgtatctgtcggcctttccggtgcaacaaatgtttctgcattaaag
gagaaggatgtcaatacttccctgaataaacctattgcatctcttcctgcatccaaggat
aaacagataaaaatcaatgatatttttgtgcaagcatccaaggaacaggaaatacaacaa
ctttgtgaagaccaagtatcaacaacttcattgggatgtcttcaacaaatttcaaatgat
ttgccagctccagcaaagaagaatgtaagcagtgagccctgtgacacgccctttcagaaa
gtagactacagctgttcagctgattctgttattaccatagaagatgattgggatgatata
gatgattttgacttatcggcaaagcaaaagagctactcaaaaccattggttttatccccc
aagagtcagattgtaaaaactagcaagactctacaaatatcaaattcccctacaaataga
ttatctagagcatctaggactgtaagccgtgagcaggggctttcaaaaccttgtccttct
gaaaatggtgtaaaactacagagtgacagactgccagatttatcagaaagctcactgatc
tacattgatttgcttcctgatgattcgattcctaataaccgtaaaaagactttatgtgaa
gatcttcaagaggagttgtccgcagaaactattctggatgacaaaaaggaagagacttgt
acagctgatagaaaaaaacagaataatggcaaagtacctctaggtgaggatgaggaggac
agccagtcactgaaagacctagataaaggatgggttgagacgcttgcaaccactgggctt
gatgaggatgatgactatctagatatcattccaccctccccagaagaagtgtcttgcatc
tcagcgccaaaaaaaaccaatagttttctcaaagaatccactgttgaaggaaaaccaaca
gttaataccacttggtcagaacccaagaaaactaccgcaaagcagcccagcaatggaacc
agcacagagaatgcagataaatgcttaccttgggaacagcagctctataacgtgatggaa
aatatctgtaaactggtggatgctgttccaatacatgaacttaagtctttgtcctgtggg
aatgatcttctttggcagagagattgcaggagaaaattgttaactaattgcacagatgca
agcaaaagtggtgcagatatcctccttgccacaacctggaaaccctgtcctggacgtgat
acatgcatgagtgatgacgttctccttccgttaggtcaaaaaagcattttgagccctgag
ggaaattctttcaaatttacaaaattttcttctccaccttctggtgctgttaataaaagt
tttctctgtacagaaaaatttcacactctagataccttggatacatcagatgctttgcag
catattgcaccaaacaccaacatcagagaaaacacaggattttgtttttctaagctagat
agcagagagagaacatcactcagctttggcaatgacgtgtcacctctcaaccgtagctgg
tgtgaaaaaccagggatggaaaagactgcaagctggcatttatccaaggtgcctgtcaca
agcactgctttgaaagcgcagaatcacttttctgctggcactaatggaaaagcaggggac
catgcagaaacaacaagggacatagactttgaacttgataattttgatattgatgatttt
gatgaggactgggataaccctctaaacgattcagtccctgaccagccattataccatccc
atcagagaaggtcagcctactaaatcgttgtcaaagccatcttttacagccaagggaatt
aaccatggatctaatcctgctgtttccaaaccaaactctttcatgtcatccagaaactgt
tcagacccattgctcagaaatccagcactggatcggttcagaggcttcactttttcccat
tccgaagaaatgttgaacgtgtttcacaaaaagtttggtttgcatagttttcggacaaat
cagctggaggccattaatgctgctttgctgggtgaagactgttttattttaatgcccact
ggtggtggtaaaagtctgtgctatcagctaccagcttgcgtgtctcctggagtcactatt
gtaatctctccactgaggtcactaatagtagatcaagtccagaagctaaatacattggat
atttctgctacatatctgactggtgataggactgatggtgatgcttcaaaaatttatgtg
cagctatcaaaaaaggatcctgtaataaaacttctctatgttactccagagaaggtgtgt
gcaagtggcagactgatctcggccctggaaaacttgtatgagaggagactactggcacgt
tttattattgatgaagcacactgtgttagtcagtggggtcatgattttcgaccagactat
aaacggctgaatatgctccgcaagaaatttcactctgttcctatgatggctcttactgcc
actgccaatcccagggtacagaaggatatccaaaaccaactggagatgctgcaaccacag
gtgtttactatgagtttcaacaggcataacttgaaatatgatgtattgcccaaaaagcca
aaaagtgtggcaaaggattgcttagaatggatcaaaaagcatcatccatatgactctgga
atagtttattgcctttcacggcacgaatgtgattcaacagctagaattctaaaggacggt
ggtcttgctgcacttgcctatcatgctggcctccgggatgctgaaagagatcttgtacaa
aaaaaatggattaatcaggaaggctgtcaggtcatatgtgcaacaattgcttttggcatg
ggaattgataaaccagatgtacgctatgtgatccatgcatctctccctaaatcagttgaa
ggctactatcaagaatctggcagagctggacgagatggtgaaacttctcactgtctgctt
ttttatagttacagtgacgtaaataggctgagaaggctaatattaatggaaagagatggg
aacagtcatacaaaacagacccactttaacaacctttacagtatggttcattactgtgag
aatgtagttgaatgtcgaagaattcagcttttagcctattttggagaaaccagttttaat
cctaacttctgtaaagaacatccagaagcaacttgtgacaactgctcgagagaaaaggat
tataaatccagaaatgtgacagatgatgtgaaaagtattgtaagatttgttcaggagcac
tgtggacagggaggaggaggaagaagaagtgcaggaaacagaggttcagggaggtataca
ctgaacatgatgactgacattttcttgggtgtgaaaagcgcaaagattcagactggcata
tttgggaagggagctgcctactcaagacataatgctgaacggctctttagaaagctggtg
ctggacaagatcctggatgaagatttgtatatcactgcgaatgaccaagcagtatcatac
gtaattgtaggagagcgagcacaggctgtactaaatgggtgtctagaggtgcagtttcat
gaaacggagtctgccagcagtctccgaaagcaaagggcttcagtggcaaaaatgtcagaa
cgggaagaaatggttaagaaatgccttgtggagcttacggatatgtgcaaaactcttggg
aaaatctttgatgtccattacttcaatatttttaacacttctactctcaagagaatagca
gaaactttgtcttctgatacggaggttttgcttcagattgatggtgttacagaggacaaa
ctggagaagtatggtgctgaaataattaaagtcatgcagaagtactctgattggacattg
ccagaagaagattatgcaactgcaggcaaagggcctgggagtgcaggaatgctcgagagc
gatgaggagtcggagggaacgggcacaacttcaagctattttaacaacaagacaaacaaa
ggaaagaggaggaaaaggtttccacccttcaaacaagccaagaagaaaaaaacaagtcag
ggtggtggtcagcagtcttattcaaaggggggtggcagcaaatataaaaagacattcaac
tccaaagcctcagctgcacctagttacagctcatcaacatacggggcgacagcagtgcca
ggactcagtcggaaactggggatcatggcaccaccgaagcctcaaaatagacagttcctt
aaaccgtcatattcattattataa

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