Alligator mississippiensis (American alligator): 102560605
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Entry
102560605 CDS
T03087
Symbol
RAD50
Name
(RefSeq) RAD50 double strand break repair protein
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03440
Homologous recombination
amj03450
Non-homologous end-joining
amj04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102560605 (RAD50)
03450 Non-homologous end-joining
102560605 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
102560605 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
amj03032
]
102560605 (RAD50)
03400 DNA repair and recombination proteins [BR:
amj03400
]
102560605 (RAD50)
DNA replication proteins [BR:
amj03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
102560605 (RAD50)
DNA repair and recombination proteins [BR:
amj03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
102560605 (RAD50)
BRCA1-C complex
102560605 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
102560605 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
AAA_29
DUF2703
AAA_13
Motif
Other DBs
NCBI-GeneID:
102560605
NCBI-ProteinID:
XP_014453124
LinkDB
All DBs
Position
Un
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQIISFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGNSFVHDPKVANETDVRAQIRLQFRDVNGELVAVQRSMVCTQKGKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDTLRQVRQKQGQKVKECQTELKYLKQNKEKAREIQDQLNSRETQLAVSKEN
VKSIENQLDPLKTRLAEIERNLIKVMGLDNDIKALDSRKRQMEKDNRDLQQKMEKVFQGT
DEQLRDRYQNHQRIVKEKERRLADCQRDMERVSKECLRFNREKSDLLVEQGRLQLQADRH
QEHIRIRDSLIQTLAAQLEFDGFERAPLNERQISNFNKLVKERQEKEAETANQLMREFSA
KEVVKQKQIDEIRDKKTGLESTIVLKSDIQDKKKLELKNVKSELQQLEGSSNRLLELDQE
LAKAEHELDKAEKNSNVEALEQEVQVLQIEKEDLDKVLRKLDQEMEQLNLHTMTITQMDM
LNKDKADKEEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHAKTREINQTRDKLAKFNKE
LASAEQNKNHISTELRKKEEQLSGYEEKLFDVCGSQDFESDLYKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEEDQACCPVCQRVFQTETELQDVISDLQSKLRLAPDKLKTTESELK
RREKRRDEMMGLKPIRQTIVELKEKDIPDLRNKLQNVNRDIQRLKTDIEEVETLLHTVIP
EEESAKACLQDITLMERYQIDLRDVERKIAQHAAKLLGVDLTRTVQQVSQEKQGKKHLWD
TVTSKIELNQKLKQAQQNEIQQLKSTLNELKAEKLHISGRMQRRQQLEEQTVELSTEVQS
LSREIKEAKEQIFPLDATLEKLQQEREDLINKKNTSNKTMQDKINDTKEKVKTIHNYMKE
IENYIQDGKEDYKKQKESELDEVKTQLADCENRKERINKEMGTIRQDIDTQKIQERWLED
NLTLRKRNEELKGVEEEIKQHLKELGEMKAQQMKTEQHHLEEKIEELKRNHSLALGRQRG
FEEEIIRFKKELRESQFKDAEEKYRDMMIVMRTTELVNKDLDIYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRSYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIVKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgagaaaatgagcatccttggagtgaggagttttggggtagaggacaaa
gacaagcagattatctctttcttcaatcccttaaccattttggttggaccaaatggtgca
ggaaaaacgactatcattgaatgccttaaatacatatccactggagatttccctccaggt
accaaaggaaattcttttgttcatgatccaaaggttgccaacgaaacagatgtcagagct
cagattcgactgcagtttcgtgatgttaacggagagcttgtagctgtccagcgatccatg
gtttgtacccagaaaggcaagaaaacagaatttaaaactcttgaaggtgtcattactagg
acaaagcatggagaaaaggtcagcctgagttccaagtgtgcagaaattgaccgagagatg
atcagctcccttggtgtttccaaatcggtacttaataacgtcattttctgccatcaagaa
gattcaaactggccattaagtgaaggcaaagctctgaaacagaaatttgatgagatcttc
tcagcaaccaggtatattaaagcactagatactctccgtcaggtgcgtcagaagcaaggc
cagaaggtaaaagagtgtcaaacagaattgaagtatctaaaacagaataaagaaaaagca
cgtgaaattcaggatcagcttaacagtagggaaactcaactggctgtttctaaggagaat
gtaaaatctattgagaatcaacttgatcctctaaagactcgtttggcagaaattgaacgg
aatcttataaaagtaatgggacttgataatgacattaaagctttggacagcaggaagaga
cagatggaaaaagataatcgggatttacagcagaagatggagaaggtgtttcaaggaaca
gatgaacaactaagagacaggtaccaaaatcatcagagaatagtaaaagagaaagaaagg
agattagcagactgtcaacgtgacatggaaagagtaagcaaagagtgcctgagattcaac
agagagaaatcagaccttcttgtcgaacaaggtcgtcttcagctgcaagcagatcgtcac
caagagcacatcagaattcgggattcgttaattcagactttagcagcacagctggaattt
gatggctttgaacgagcacctttaaatgaaagacaaattagcaattttaacaagcttgtg
aaagaaaggcaagaaaaagaagcagaaacagctaaccaattaatgagggaattttcagca
aaagaagtagtgaaacaaaaacagatagatgaaataagagataagaaaactggcctggaa
agcaccattgtcctgaagtctgatattcaagataagaaaaagctcgaactgaagaatgtg
aaaagtgagcttcagcaactggagggatcttctaacaggcttctggagttggatcaggag
cttgccaaagctgaacatgaactagataaggctgagaagaacagtaatgtggaagccctt
gaacaagaagtacaagtactgcaaattgagaaagaagatctggacaaagttctaaggaaa
ttggatcaggagatggaacagttgaacttgcataccatgacaataacccaaatggacatg
ctgaacaaagacaaagcagacaaagaggagcagatcagaaaaataaaatctaggcacagc
gatgaattgacatcattgttaggatactttccaaacaaaaaacagcttgaagattggctc
catgctaaaactagagaaattaatcagacaagggacaagcttgccaaatttaacaaagaa
ctagcttctgcagagcaaaataaaaaccatattagtactgaactaagaaaaaaagaagag
cagttgtctggctatgaagagaaactttttgatgtttgtggaagccaagattttgaaagt
gatttgtacaagcttcaagatgaaattgaaaagtcttctaagcagcgagctgtgcttgct
ggagccacagctgtttattcacagtttattacacagctgactgaggaggatcaggcgtgt
tgcccagtttgtcagagggtctttcaaaccgagacagaactgcaagatgtaattagtgat
ctacagtctaagttgcgtcttgcaccagacaaactgaaaacaacagagtctgagcttaaa
agacgggagaagaggcgtgatgaaatgatgggacttaaaccaataaggcagaccatagtc
gaactcaaagaaaaggacataccagatttaaggaacaaactacagaatgtaaaccgagat
attcagcgcttaaaaactgatatagaagaagtagaaactctcttacatacagttattcct
gaggaggaaagtgccaaagcatgcttacaagatataacacttatggaaagataccagatt
gatctaagggatgttgaaagaaaaattgctcagcatgctgccaaactgctaggggtagac
ttaactagaactgttcaacaagtaagccaagaaaagcaaggaaagaaacacttgtgggat
acagtaacaagtaaaattgagttaaatcaaaaacttaagcaagcccagcagaatgagatc
cagcagctaaagagtacactgaatgaactgaaagcagagaagcttcacatttccggcaga
atgcaacgtcgacaacagctggaagaacagactgtggaattgtccactgaggttcagtcc
ttaagcagagagatcaaagaagcaaaggaacaaatatttcctttggacgctactttagaa
aaactccagcaggagagagaggatctaatcaataagaagaacacaagtaacaagacaatg
caagacaagataaatgataccaaagagaaagttaaaactattcacaactatatgaaagaa
attgaaaactatattcaagatgggaaagaagactataaaaagcaaaaggagtctgaactc
gatgaagtaaaaactcaattagctgattgtgagaaccggaaggaaaggataaataaagag
atgggaacaattagacaagatattgatacccagaagatacaagaaagatggctagaggat
aatcttactttaagaaaaagaaatgaagagctaaaaggagttgaagaagaaataaaacag
catttgaaggagctgggggaaatgaaagctcaacaaatgaaaacagaacaacatcatcta
gaagagaaaatagaagaactgaaaagaaatcacagtttggccctaggcaggcagcgtgga
tttgaggaagagatcattaggtttaagaaagagcttcgagaatcacagttcaaagatgca
gaggaaaagtacagagacatgatgattgttatgagaacaacagagctggtgaacaaggac
ctagacatttactacaaggcacttgacaaagcaataatgacatttcacagcatgaaaatg
gaagaaataaacaaaataattcgtgatctttggcgaagcacctacagagggcaagatatt
gaatatatagagattcgttctgatgcagatgagaatgtttcagcatctgataaaaggaga
agttacaattatagagtagtaatgataaaaggagatactgcattggatatgcgaggaaga
tgtagtgctgggcaaaaggtacttgcttcccttattattcgtcttgctctggcagaaaca
ttttgtctcaattgtggtattcttgcgctggatgagcctaccactaatcttgatcgagaa
aatatcgagtctcttgcacatgcactggtggagataataaaaagccgctcgcaacagcgc
aactttcagctgcttgtgataacacacgacgaagattttgtggagcttctgggccgctct
gaatatgtggagacattctacaggataaagaagaacattgaccagtgttctgagattgta
aagtgcagtgtcagttccttaggttcatatgttcattaa
DBGET
integrated database retrieval system
