Alligator mississippiensis (American alligator): 102564274
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Entry
102564274 CDS
T03087
Symbol
SCN2A
Name
(RefSeq) sodium channel protein type 2 subunit alpha
KO
K04834
voltage-gated sodium channel type II alpha
Organism
amj
Alligator mississippiensis (American alligator)
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amj04040
]
102564274 (SCN2A)
Ion channels [BR:
amj04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
102564274 (SCN2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
ATP-synt_B
HB_ELP1
Neur_chan_memb
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
102564274
NCBI-ProteinID:
XP_019335738
LinkDB
All DBs
Position
Un
AA seq
1628 aa
AA seq
DB search
MAQSVLVPPGPDSFHYFTRESLAAIEQRIAEEKAKKSKEERKDDDDENGPKPNSDLEAGK
TLPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSAVYMLTPFNPLRK
IAIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKILARGFC
LENFTFLRDPWNWLDFTVITFAYLTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCLQWPPDNSTFEINVISYFNSTI
GENGSFVNATVSTFNWDEYIEDTSHFYFLEGQNDALLCGNGSDAGQCPEGYICVKAGRNP
NYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLI
LAVVAMAYEEQNQATMEEAEQKEAEFQQMLEQLKKQQEEAQAAAVAAAADSREFSGVGGI
AGFSESSSEASKLSSKSAKERRNRRKKKKQKEQSEGEGKDEEEFHKSESEDSIRRKGFRF
SIEGNRLTYEKRFSSPHQSLLSIRGSLFSPRRNSRASLFSFRGRAKDVGSENDFADDEHS
TFEDNESRRDSLFVPHRHGERRNSNISQASRSSRTIPALPANGKMHSTVDCNGVVSLVGG
PPALTSPTGQLLPEGTSTETELRKRRSSSYHVPMDYLTDPSARQRAMSIASMLTNTMEEL
EESRQKCPPCWYKFANTCLIWDCCAPWLKVKHIVNLIVMDPFVDLAITICIVLNTLFMAM
EHYPMTEQFSSVLSVGNLVFTGIFTAEMFLKIVAMDPYYYFQEGWNIFDGFIVSLSLMEL
GLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISNDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTM
CLTVFMMVMVIGNLVVLNLFLALLLSSFSSDNLAATDDDNEMNNLQIAVSRIQKGIDFVK
RKAREFIQKAFVRKQKALDEIKPLEDLNNKKDSCISNHTIVEIGKNLNYLKEGNGTTSGI
GSSVEKYVVDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEFSSESDLEESKEKLNAS
SSSEGSTVDIGLPPEGEQPEVEPEDSLEPEACFTEGCIRRFKCCQVSVEDGKGKLWWNLR
KTCYRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYIFILEML
LKWVAYGFQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALS
RFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYYCVNTTNDERFDVS
QINNYSQCEDLIANNKTARWKNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSRNVL
DQPMYEENLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPANKFQGMVFDFVTKQAFDISIMILICLNMVTMMVETDDQSKE
METILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGKNNSLSRRDR
WNLGAINI
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atggcacaatcagtgctggtaccaccaggacctgacagcttccattatttcacaagagag
tcacttgcagctattgaacaacgtattgcagaagaaaaagctaagaagtccaaagaagaa
cgcaaagatgatgatgatgaaaatggaccaaagccaaatagtgacttggaggcagggaag
acactgccatttatttatggtgacatacctccagaaatggtgtccgagcccttggaggac
ctggacccatactacatcaataaaaaaacttttatagtattgaataaagggaaggcaatc
ttccgattcagtgccacctctgccgtgtacatgttaactcctttcaatccccttagaaaa
atagctattaagattttggtacattcattattcagcatgcttattatgtgcactattttg
accaactgtgtatttatgaccatgagtaaccctccggattggacaaagaatgtagaatac
acgttcactggaatttatacctttgaatcgcttataaaaattcttgcaaggggattctgt
ttagaaaattttacttttctccgtgacccatggaattggctggatttcactgttattaca
tttgcatatctaacagagtttgtggacctgggcaatgtctcagcgttgagaacattcaga
gttctccgagcattgaaaacaatatcagtcattccaggcttgaagactattgtgggagcc
ctaattcagtctgtgaagaagctctcggatgtaatgatcctgactgtgttttgtctgagt
gtgtttgcactaatagggctacagctattcatgggcaacttgaggcataaatgcttgcag
tggcctccagacaactcaacttttgaaataaatgttatttcctactttaacagcacaata
ggtgaaaacggttcatttgttaatgcaacagtgagcacgtttaactgggatgagtacatt
gaagatacaagtcatttttactttttggaagggcaaaatgatgctctgctgtgcggcaat
ggctcagatgcaggtcaatgtccagaaggatatatatgtgtgaaagctggtagaaacccc
aattatggctatacaagcttcgatacattcagctgggcattcttatcactgtttcgactg
atgactcaggacttttgggagaatctgtatcagctgacattacgagctgctggcaaaaca
tacatgatattttttgtgctggtaattttcttgggctctttctacctgattaacctaatc
ctggctgttgttgccatggcctatgaagaacagaaccaagcaaccatggaagaagcagaa
cagaaagaggcagaatttcaacagatgcttgaacagctgaaaaagcaacaggaagaagct
caggcagcagcagtggcggcagcagccgattcaagagaattcagtggagtaggtggcata
gctggattttctgaaagttcttctgaagcatcaaagttgagttcaaagagtgctaaagag
aggaggaacagaagaaagaaaaaaaagcagaaggagcaatctgaaggagagggaaaggat
gaggaagaatttcacaaatctgaatcagaagacagtatcagaaggaaaggcttccgattt
tctattgaaggcaacagattgacatatgaaaagaggttctcttctcctcaccagtctttg
ctgagcattcgtggctcccttttttccccaagacgtaacagcagagcaagtcttttcagc
ttcagaggtcgagcaaaagatgtaggatcagaaaatgactttgctgatgatgagcacagc
acttttgaagacaatgagagcagaagggattctctctttgttccacacagacatggtgaa
cgacgcaacagtaatattagccaggccagtaggtcatccaggaccataccagcacttcca
gcaaatgggaagatgcatagtactgtggattgtaatggtgtagtttctttagttggtgga
cctcctgctctgacatcacctactggacaactactgccagagggcacctctacagaaaca
gaattaagaaagagacgttcaagttcttaccatgttcctatggactacttaacagatccc
agtgcaaggcaaagagcaatgagtatagccagcatgctcacaaatacaatggaagaactt
gaagaatccagacagaaatgtccaccatgctggtataaatttgctaatacgtgcttgatc
tgggactgctgcgctccatggttaaaagtaaaacatattgtaaatctgattgtgatggat
ccatttgttgatcttgctataactatatgcattgttttaaatactctgtttatggctatg
gagcattatccaatgacagagcagttcagcagtgtgctttcagtaggaaacctggtattt
actgggatcttcacagcagaaatgtttcttaagatagttgccatggatccttactattat
ttccaagaaggatggaatatttttgatggttttattgtgagccttagtttgatggaactt
ggtcttgcaaatgtggaaggcttatctgttctcagatctttcagactgcttcgagttttc
aagttagcaaaatcttggccaacgctaaatatgttgataaagattattggtaactcagtg
ggggctttaggaaatttaaccttggtgctggccatcattgtcttcatttttgcggtggtt
ggcatgcagctctttggtaaaagctacaaggaatgtgtctgcaagatctctaatgactgt
gaacttccacgctggcacatgcatgactttttccactctttcttgattgtattccgagtg
ctgtgtggagaatggatagagactatgtgggactgtatggaggttgcaggtcaaaccatg
tgccttactgtcttcatgatggtcatggtgattggaaacctagtggtactcaacctcttt
ctggccttgcttctgagctcatttagttcagacaaccttgctgctacagatgatgataat
gaaatgaacaatttgcagattgctgtgtcaaggattcagaaaggaattgattttgtgaaa
agaaaagcacgtgaattcatccaaaaagcttttgtaagaaagcaaaaagcgttagatgaa
atcaaacctcttgaagatctcaacaacaaaaaagacagttgcatttccaaccataccata
gtagaaataggtaaaaaccttaactaccttaaagaagggaatggaactaccagcggcata
ggcagcagtgtggaaaaatatgtcgtcgatgaaagtgattacatgtcattcataaacaat
ccaagcctcactgtgacagtaccaattgctgttggggaatctgattttgaaaatttaaat
acagaggaatttagcagtgagtcagatctggaggaaagcaaagagaagctaaatgcatcc
agctcatctgaagggagcacagttgatattggacttcctccagaaggagaacaaccagaa
gtagaacctgaagattctcttgaaccagaggcctgttttacagaaggctgcatacggagg
ttcaagtgctgtcaagtcagcgtcgaagatgggaaaggaaaactctggtggaaccttagg
aaaacctgctacagaatagttgaacacaactggtttgagactttcattgtcttcatgatt
cttctcagcagtggtgctctggctttcgaggacatatatattgaacagcgcaagactatc
aagaccatgctagaatatgctgacaaggtcttcacttacatcttcattctggaaatgctt
ctgaaatgggtggcctatggttttcaaacatatttcactaatgcctggtgctggctggat
ttcttgattgtcgatgtctctttggttagcttaacagctaatgccttgggctactcagaa
cttggtgcgattaaatcccttaggacactaagagctttgagacctctaagagccttgtca
cgatttgaagggatgagggtggttgtgaatgccctcttaggagcaattccatccattatg
aatgtgcttcttgtttgtctcattttttggctaatcttcagcatcatgggagtaaatcta
tttgctggcaaattctactactgtgttaacaccacaaatgatgaaaggtttgatgtcagc
caaatcaataattacagtcaatgtgaggaccttatagcaaacaataaaactgcccgatgg
aaaaatgtgaaagtgaactttgataatgtaggacttggttatctttctcttcttcaagtt
gccacatttaaaggatggatggatatcatgtatgcagcagtggattctcgcaatgtattg
gatcagcctatgtatgaggaaaacctgtatatgtatctttactttgtcatctttataatc
tttggatcattctttaccttgaacctgttcattggtgtcattattgataacttcaaccag
cagaaaaagaagtttggagggcaagacatcttcatgacagaagaacagaagaaatattac
aatgcaatgaaaaagttgggttcaaagaaaccacaaaaacctatacctagaccagcgaac
aagtttcaaggcatggtcttcgactttgttacaaaacaagcatttgatatcagtattatg
attcttatctgtcttaacatggtcaccatgatggtagaaacagatgatcagagtaaagaa
atggaaactattttatctcggattaacctagtgtttattgtccttttcaccggagaatgt
gtcctgaaactgatctcactccgccattactacttcaccataggctggaacatttttgat
tttgtggttgttattctctccatagtaggtaagaacaattcactttcaagaagggaccgt
tggaatcttggggccattaacatttga
DBGET
integrated database retrieval system
