Alligator mississippiensis (American alligator): 102566632
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Entry
102566632 CDS
T03087
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102566632 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102566632 (CNOT1)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102566632 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102566632 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102566632
NCBI-ProteinID:
XP_006271768
LinkDB
All DBs
Position
Un
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGTQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDNKGLQIVVFGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFITACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPGGL
TTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQTDLSQVWPEANQHFSKEIDD
EANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYP
DKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDRFKNRLK
DYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQV
PAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLVATDQTE
RIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFH
SLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAK
NKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTMAIMNVL
AELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQP
EELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPAIPLFQAH
PQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMR
NLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQREMMEQAAAQLAQENCELACCF
IQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDP
KQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELEQHLQSI
PHTLTMNPQTQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRE
CHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHL
AQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRGNAPEGL
PQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSA
AAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgacacggt
cccgaggcagacaggcatttacttcgctgtctattctcacatgtggatttcagtggcgat
ggtaaaagcagtggtaaagatttccatcagactcagtttctgatccaagagtgtgcatcc
ctgatcacaaagccaaactttatctcgacactgtcctacgccattgacaatccattgcac
tatcaaaagagtctaaagccttcaccccatctatttgcccaactgagtaaagttatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctcagaggttttgcggctcagtttatcaaacagaaacttccagatcttctgcgctcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaagtc
ctgcaccttctcctctctcatctcctttttgggcagaagggagcctttggggtcggacag
gaacagattgacgctttccttaaaacattacgtagagattttccccaagagcgctgtcct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagctctctggcagactttatgcaa
gaagtaggctatggcttttgtacaagtgttgaagaatgtcgcaatataatcatgcagttt
ggtgtgcgggaggtcactgcttctcaggttgccagagttttgggaatgatggcccgaact
cattcagggttgacagatggtattccattacaatctatctcggctcctggcagtgggatc
tggagtgatgggaaggacaaaagtgatggaacacaagctcacacctggaatgtggaggtt
ttaatagatgttcttaaagagttgaatcctagtttgaacttcaaggaagtaacctatgag
ttggaccacccagggtttcaaatccgtgacaacaagggtctgcagattgtggtgtttggc
atccagagagggctaggcatggaagtcttcccagttgatctcatatataggccttggaaa
catgcagagggccagctctccttcattcagcattctctcataaatccagagatcttctgc
tttgctgactacccctgtcatactgttgccacagacatccttaaagcgccaccagaggat
gacaatcgagaaattgccacctggaagagcctggatttgatcgaatccttgttgcgtttg
gcagaggtggggcagtatgagcaggtgaagcagctcttcagttttcctatcaagcactgc
ccagatatgttggtattggccttattacagatcaacacttcctggcataccttgcgccat
gagctcatctccacacttatgccaatttttcttggcaatcaccccaactctgccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgccaacttatcatgcat
gcaatggcagagtggtacatgagaggggaacagtatgatcaggcaaaactgtcacgcatt
cttgacgtggcacaagacttgaaggccttgtcaatgctgctcaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaagcttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatcacagcctgtatgactttttta
aagaggcgatgcccatctatcctgggtggccttgccccagaaaaggaccagcccaaaagt
gctcagcttcccccagaaactctagcgactatgttggcttgcttacaagcttgtgccggg
agtgtttctcaggagctatcggagaccatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaagctagacaaccaccacctggagtcatgcccaagggacgtccacctagtgct
agcagtttggatgctatttctcctgtacagattgacccgcttgctgggatggcatctctt
agtttaggtggttcagcagctccacatacccagagtatgcaaggcttccctcctaacttg
ggctctgctttcagcacacctcagtcaccagcaaaagcatttcctcctctttccacccaa
aaccagaccacaggttttagtggcattggaggactctcttcacagcttccaggtggtctt
actacgggtagcctgactggtataggaactggggcccttggcctccctgcagtgaacaac
gatccattcgtgcaaaggaaactgagcacatctggactgaaccagcctacattccagcag
accgatttatctcaggtgtggccagaggcaaatcagcactttagcaaagaaatagatgat
gaggcaaatagctactttcagcgcatttataaccatccaccacacccaaccatgtctgta
gatgaggtattagaaatgctacagagatttaaagactccaacattaaacgggaacgagaa
gtgtttaactgtatgctgaggaacttgtttgaggagtaccgatttttcccccagtaccca
gataaagagctgcacataacagcctgcctctttggtgggataatagagaaaggactggtt
acttatatggcattgggccttgccctgcgctatgttcttgaagccttacgaaagcctttt
gcatccaaaatgtactattttggtattgctgcactagatagatttaaaaatagattgaag
gactatccccagtattgtcagcacttggcttctattagtcactttatacagttccctcat
cacctacaggagtacattgaatatggacagcaatccagagatcctcctgtgaagatgcag
ggttcaatcaccacccctggaagtattgcacttgcccaggcccaagcccaggcccaggtt
ccagcaaaagctcctcttgctggtcaagtcagcactatagtaaccacctcaaccaccacc
actgttgcaaaaaccattacaatcactcgaccaaccggagtcagcttcaaaaaagatgtt
ccaccttccattaatactaccaatattgataccttgctagttgcaacagatcaaacagag
agaattgtggaacccccagaaaatgtccaggaaaagattgcattcatcttcaacaatcta
tctcaatcaaacatgacacagaaggttgaggagctgaaggaaacggtgaaagaagagttc
atgccttgggtttcacagtaccttgtgatgaaaagagtcagtatcgagccaaactttcac
agcttatattcaaacttccttgatactcttaagaatccagaatttaataagatggttctg
aatgaaacctatagaaatatcaaggtgctgctgacatctgataaggctgcagccaacttc
tcagaccgttccctgttaaagaaccttggccactggttgggaatgatcacattggctaaa
aataaacccatcttgcacacagatttggatgtgaaatccttacttctggaagcctatgtc
aagggacagcaggagttgctttatgtagtgccatttgttgccaaagtcttagaatccagt
gtcaggagtgtggttttcagacctccaaacccttggacgatggcaatcatgaatgtatta
gctgagctgcatcaagagcatgacttaaaactgaacctgaagtttgagattgaggtgttg
tgcaagaaccttgcattagacatcaatgagctgaaacctggaaacctcctgaaagataag
gatcgattgaaaaatctggatgaacagttgtctgctccaaagaaagatgtaaagcagcca
gaggaactaccacctatcacaacaaccactgcttcaacaactccagctaccagcaccact
tgtacagccactgttcctccacaacctcagtacagctaccatgatatcaatgtctactca
ctgggagggttggctccacatattactctaaatccagctattccactatttcaggctcac
ccgcagttaaagcagtgtgtgcgtcaggctatagagcgagccgtgcaggaacttgtccac
ccagttgtagatcggtccattaagattgccatgactacttgtgaacagatagtcaggaaa
gattttgcactggattcagaggagtcacgcatgcgtgtagcagcacaccacatgatgcgg
aacctgactgctggaatggccatgattacctgcagggaacctttgctgatgagcatagct
accaacttgaagaacagttttgctactgccctgagggcagcatccccacaacagagggag
atgatggagcaggcagctgcacagttagctcaggagaactgtgagttagcatgctgcttc
attcagaagacagctgtggaaaaggcaggccctgaaatggacaagaggctggcaactgaa
tttgagctcagaaagcatgccagacaagagggtcggcgttactgtgatccagttgtgtta
acttaccaggctgaacggatgccagagcagataagactgaaggttggtggtgtggaccca
aaacaactagctgtttatgaagagtttgcccgcaatgtccctggcttcttacctaccaat
gacttaacacagcccacaggattcttggctcagcctatgaagcaggcctgggctactgat
gatgtagcacagatctacgataaatgtatgacagaactggaacagcatctgcaatctatt
ccacataccctgaccatgaacccacaaactcaagccttacgcagcctcttggaggctgta
gtggtggctcgtaactcccgtgatgctattgctgctcttggactgctacagaaggctgtt
gagggcttattggatgccaccagtggtgctgatgctgacctactgctccgctaccgtgaa
tgtcatctgcttgtactgaaagctttgcaggatggccgtgcctatgggtccccgtggtgt
aataaacagattaccagatgcctgattgaatgccgggatgagtataaatacaatgtagaa
gctgtagagctgctaatccgcaatcaccttgttaacatgcagcagtatgaccttcattta
gcacagtcgatggagaatggcttgaactacatggcagtggcatttgccatgcaactggtg
aagatcctgttggtggatgagaggagtgtagctcatgtaaccgaggcggatttgttccac
acaattgagacgctgatgaggattaatgcccactccagaggaaatgccccagaaggatta
ccccagttgatggaagtggttcgatccaactatgaagcaatgattgaccgtgcccatgga
gggcctaattttatgatgcattctggaatttcccaagcctctgagtatgatgatccacca
ggcctgagggagaaggcggagtatctactgagggaatgggtgaatctctaccattcagct
gcagctggccgtgacagtaccaaagctttctctgcgtttgttggacaggtagagcttttg
gaaagaaagatgcaccagcaaggaatcctgaaaacggatgacctgatcactcgcttcttt
cgcctttgcactgaaatgtgtgttgaaatcagctaccgtgctcaagctgagcagcagcac
aatcctgctgccaaccccaccatgatcagagccaagtgctaccacaacctggatgccttt
gtgcggcttattgcactgctggtgaagcactctggggaggctaccaacacagtcacaaag
atcaacctgttgaataaggttcttggtatagtggtgggagttctccttcaggaccatgaa
gttcgccagagtgagtttcagcagcttccttaccaccgcattttcattatgttgctgtta
gaattaaatgctcctgagcatgtactggagactatcaactttcagaccctcacagctttt
tgtaacacatttcatatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctctcatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtacgcccagttgttgattgatctcttcaagtacttggctccttttctt
agaaatgtggaactcaccaaacctatgcaaattctctacaagggcactctgcgtgtattg
ctggtcctactgcatgatttcccagaattcctttgtgattaccactatgggttctgtgat
gtgatcccacccaactgtatccagctgaggaatctgattttgagtgccttcccacgtaac
atgagacttccagatcctttcactcctaaccttaaggtggacatgttaagtgagattaat
attgctccgcggatactcactaacttcactggagtgatgccacctcagttcaaaaaagac
ttggattcgtatctcaaaactcgctctcctgtcactttcctgtccgatttgcgcagcaac
ctacaggtatcaaatgaacccggcaatcgctacaacatccagctaattaatgcactggtg
ctctatgtaggtactcaggctattgcacacattcacaacaaaggcagcacaccctctatg
agcaccatcacccattcagcccatatggacatcttccagaatctggctgtggaccttgat
actgaaggtcggtatcttttcttgaatgcaattgccaatcagctgcggtaccccaacagt
cacacgcactacttcagttgcaccatgctttacctatttgcagaggccaacaccgaggct
atccaggaacagattacgagggttcttttggaacgactgattgtaaataggcctcaccca
tggggtctcctcattaccttcattgagctgataaaaaacccggcatttaagttctggaac
catgaatttgtccattgtgctccagaaattgagaagttgttccagtcagttgcacagtgc
tgtatggggcagaagcaggcacagcaagtgatggaagggactggtgccagttaa
DBGET
integrated database retrieval system
