Alligator mississippiensis (American alligator): 102574154
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Entry
102574154 CDS
T03087
Symbol
COL6A6
Name
(RefSeq) collagen type VI alpha 6 chain
KO
K06238
collagen type VI alpha
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj04510
Focal adhesion
amj04512
ECM-receptor interaction
amj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102574154 (COL6A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102574154 (COL6A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102574154 (COL6A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
amj04147
]
102574154 (COL6A6)
00536 Glycosaminoglycan binding proteins [BR:
amj00536
]
102574154 (COL6A6)
Exosome [BR:
amj04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102574154 (COL6A6)
Glycosaminoglycan binding proteins [BR:
amj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102574154 (COL6A6)
Hyaluronan
Extracellular matrix or blood plasma proteins
102574154 (COL6A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA-TerF-like
Motif
Other DBs
NCBI-GeneID:
102574154
NCBI-ProteinID:
XP_014458030
LinkDB
All DBs
Position
Un
AA seq
2261 aa
AA seq
DB search
MKMLLTLFLLFIGIQTSKNQDTAPESADIVFLIDSSDTLGKKAFPALKNVMIKIINNLPV
APNKYRIALAQYSDDLQNEFLVDKYKTKTLMINHIRKNLVFKGGSIRTGNALQKVRATYF
KEPIHPSDKPQILVVVTSGTSEDDVKQAANVLKRSGVKIIAVGLQKASPEELQSMATQEF
FYEYPTIQNLSEFSQNISMIIKEVIQADVNGIIPTPTVDLETVEVCERDSISDVVFIVDE
GAPRANFEHVKTFLENTVSLLDVKKDCIRTGLVTYSSEPRVISLLNAETNRADILNKIQG
LSSRAGKANMGAALKVTREKVFVEYAGSRKTQSVNQIATLITHRASDDHVSEAARDLRRT
GVTVFAIGVENANETQLTQIASYPQPQYVTTLKKFVDLTKEDTNRNFKKKLFNQIQNKLY
VQTERSKDLKTGCMDTEEADIYLLIDGSTSINIPDFKDIKEFVKEVIEMFNIGPNNVRFG
VVQYSHKIEREFTLDQYQKKGDLVRAIDNVRQIYGDTYTGKALEYMQPLFTEAKEQRRVP
CHLIVLTDGEAHDRVKEPADRLRANQVNVYAIGIKGANKTQLEEISASKARTYFVNDFDS
LKVIKDELVQKICSKEACKEMKADIMFLVDSSGSIGYENYAKMKRFMRELVNKSDIGTER
VQVGVVQFSDVPREEFQLNQYSTKSDIVSAIDRMNLINQNTLTGNALTFVAQYFQPSKGA
RPNVKKILILITDGEAQDAVKEPATALRQDGIIIYSVGVFNAKKTQLEEISGKPEFVFYV
ENFDLMKRIEDNIIFGVCSPPEDCKRIQRLDIVFVIDSSGSIDETEYKTMKDFMIALVTK
SDVGPDGVQFGAVKYSDDPTTNFYLNTYSTKSKIIKAIQDDERIGGATYTASALKHSRTL
FIKARGSRMNEGVPQVLIVITDGKSHDKQELPDEAQKLRDKGIIIYAVGIEAANYDELLM
MAGVENKCFYVDTFDGLKDISFNLSKEVCDDTKPPCKIKGSLVFLVDTSSIPMTQFSEMQ
DFMKEVVNYVNSSEHLRVGLAQYSSIYKEELKPDDSENKIAVQNTIERMKREVEDEIKPY
FGAALKKVKHYLELIGHESIHENFTRLLIIADGNSRDDVAGPAEILRNIGIKIYAIGVGQ
INHPALTQVVGTSDKWKYSVTDVNQLRSLKKRLADDFCEKDKAICFVDIVLGFDISSQQR
GHNLFHGQSQLKAYLQEILRALTSPSSVSCSKETGTQSSVAVQVKNTDKLVSTKFRIDSQ
EILNSLTNVVVNGSSHLDVSFLELLWQTFENKSDDQRRSKVMLVFSDGLDDEVEVLEQKS
EELRKKGLDALITIALEGVSNIHELQFIEFGKGFEYRTQLNIDMSNIMNLLSKYVNAVAE
RKCCCVFCKCSGNRGPAGQPGSKREKGLPGPKGSPGHSGEEGDPGPRGPTGPRGEIGTQG
CQGVKGVKGSQGIGGQKGEEGDGGVDGIDGEQGSYGFPGKKGERGDDGYQGSSGPKGPPG
ERGEKGFRGDPGTSGLDNDIRGPKGSKGERGRQGDRGPKGSAGSPGSRNSLGPAGQKGQP
GIPGVKGDPGFDGSNGDQGFRGPQGPGGIQGVKGDPGSQGNKGPQGIPGSEGSKGNPGSP
GVRGSKGETGEPGPKGLVGPYGSRGMQGEDGIDIQGRVGRKGVKGQNGCPGDTGMQGEMG
DAGIPGEPGPKGNVGKMGPAGNAGKIGDPGDPGHQGRRGPRGPKGESSFPECGLINYVRN
HSRCWSGKPECPVYPTELVFALDLSEDVTPQIFQRMKDIVISIVTDTRTRDSNCPIGARV
AVMQYGSHTHYVIRFSEFYNKKHFIQEVKNLSHQRSKTVRHIGSAMRFIARHVFKRTLQA
PNVRKIAVFFSNGPSADASLINTAVLEYRALDIIPVVIAFNDVPNVNQAFKMDDTGKFQV
INIDPEGNYIPFLQPFLLCTLCYDKCNPDASCMLPEPSPPQTYVDAAFILDSSWKMSSDE
FETVKVFLSKALDAFDISSYPVISATGDRVAMVSHATPGFKPRTHKSPVKMEFDLVTHSS
KLLMQNHIKNSLQQLNGEAALGYTIEWVMENIFSEAPNPRDNKFIIVISAGETSSWDKEM
LKEALMTAKCQGYALFVISLRPLCNDEELEELASIPLEQHLVQLGRIHKPDLGYIERFMK
AFVRLLRSSINRYPPEELRTPCETTSFPRPSPSVNHAEGSAEEYVSDAYLAAVGHLFSML
QADLHDDFLDTDFISTAYEDSATGNETEHADITNSSNEDCI
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgctactgactttgttcctcctctttattgggattcagacttcaaagaatcag
gacactgcccctgagtctgcagatattgtctttttgattgacagctccgataccctggga
aagaaggcattccctgcattaaaaaatgtcatgatcaaaatcattaataatctaccagtt
gctcctaacaaataccgtattgcacttgcccagtacagtgatgatttgcaaaatgaattt
ctggtagacaaatataaaacaaagacccttatgataaaccacatcagaaagaatttggtt
ttcaagggtgggtccataagaactggcaatgctctgcaaaaggttcgtgcaacctatttc
aaagaaccaattcatccaagtgacaaaccacagattttggtagttgtgacttcggggacc
tcagaagatgatgtaaagcaggctgccaatgttttaaaaagaagtggggtgaaaatcata
gctgtaggactacagaaagcttctcctgaagaactgcaatcaatggcaacccaagaattt
ttttatgagtatcccacaatacaaaacctctctgagttttctcagaatatttccatgatc
ataaaggaagttatccaagcagatgttaatggcataatccctacacctacggttgacctt
gaaactgtagaagtctgtgaaagagattcaatttctgatgttgtgttcatagtggatgaa
ggtgctccaagagcaaactttgagcatgttaaaacattcctggaaaacacagtgtccttg
cttgatgtgaagaaggattgcataagaactggcctggtgacatacagctccgagccacgt
gtgatatctttactgaacgcagaaacaaaccgtgctgatattctaaataaaatacagggg
ctttcttccagggcagggaaagccaatatgggcgcagcccttaaagtgacaagggaaaaa
gtttttgttgaatatgctggaagcagaaagactcaaagtgtaaaccaaatagccacactg
attactcacagagcctcagacgaccatgtgagtgaagcagctcgtgatcttcgtagaacc
ggtgtcactgtgtttgccataggcgttgaaaatgctaatgaaacccaattgactcagata
gcatcatatcctcagccacagtatgttactactctaaaaaaatttgttgacttgacaaaa
gaggatacaaacagaaattttaaaaagaaactcttcaatcaaatacagaacaagctctat
gtccagactgagagaagcaaagatctcaaaacaggatgtatggacacagaggaagctgat
atatatctgcttattgatggctcaacaagcatcaacatccctgacttcaaggacataaaa
gagtttgtgaaggaagtgattgagatgtttaacataggaccaaataacgttcggtttgga
gttgtgcagtattcacacaaaatagaacgggagtttacacttgatcaataccagaaaaaa
ggtgatttagtgagggccattgacaatgttaggcaaatatatggagacacttatacagga
aaggctctagaatacatgcagccactgtttacagaagcaaaggagcagcgaagagtacct
tgtcacctcattgtcctcacagatggagaagcacatgacagggtaaaagaacctgccgat
agactgagggctaaccaagttaatgtttatgccatcggtataaaaggtgctaataaaaca
caactagaagagatttcagcctcaaaagccaggacctattttgtaaatgactttgactcc
ttgaaggtcataaaagatgaattagttcaaaagatctgttccaaagaagcctgcaaagaa
atgaaagctgacatcatgttcctggtggacagttctgggagtatcgggtacgaaaactat
gccaaaatgaaaaggtttatgagagaactggtgaacaaatctgacattggcacagaacga
gtgcaagttggggttgtgcagttcagtgatgttcccagggaagagttccagctcaaccaa
tactctaccaaaagtgatattgttagtgctatagatagaatgaatcttataaatcaaaat
acactaactggaaatgcattgacttttgtggctcagtatttccaaccttccaaaggagca
cgtcccaatgtcaaaaaaattcttatcctgatcaccgatggggaagcacaagatgcagta
aaagaaccagcaacagccctacgacaggatggcattattatttactcggttggagttttt
aatgcaaaaaaaactcagctagaagagatttctgggaagcctgagtttgttttttatgtt
gaaaattttgatttgatgaagcgcatagaagacaatatcatttttggggtatgcagtcct
cctgaggactgcaaaagaatacaacgtttagatattgtgttcgtcatagacagttctgga
agcatagatgaaacagaatacaagaccatgaaagacttcatgattgccttggtgaccaag
tctgatgttggcccagacggagttcagtttggagctgtaaaatattctgatgacccaaca
acaaatttttatcttaatacatacagtacaaaatccaaaattattaaagctatccaggac
gacgaacgtataggaggtgcgacatacactgccagtgcacttaagcattcacgcactctg
ttcattaaggcacgtggcagtcgcatgaacgagggagttccacaggttcttatagtgata
actgatggcaaatctcatgataagcaagaacttcctgatgaagcccagaaattaagggac
aaaggcattattatctatgcagttggaatagaagcagcaaattatgacgaacttttgatg
atggcaggagtggaaaacaaatgcttctatgtggatacatttgatgggctcaaagacata
tccttcaatttatcaaaagaagtatgtgatgatacaaaaccaccatgcaaaattaaagga
agtctagttttcttggttgacactagcagcatcccaatgacgcaattcagtgaaatgcag
gatttcatgaaagaagttgtcaattatgtcaacagttctgaacatttacgagttggcctt
gctcagtacagcagtatatataaggaagaactcaagccggatgactctgaaaacaaaata
gcagtgcagaatacaattgaaaggatgaaacgggaggtagaagatgaaattaaaccgtat
tttggagccgcacttaagaaagtaaagcattaccttgaattgataggacatgaaagcata
catgagaatttcacaaggttgctgataattgctgatggaaactcacgtgatgatgtcgct
ggtccagcagaaattttgagaaatataggaattaaaatctatgctataggcgttggacag
ataaatcacccagcgcttacccaagtagttggcacttcagacaagtggaaatacagtgtt
actgatgttaatcagctgagaagcctcaagaaaaggttagctgatgacttctgtgaaaag
gataaagcaatttgttttgtggatatcgtcctgggatttgatatctcttcacaacagcga
ggacataatttgtttcatggacaatcccagctgaaagcatatcttcaagagattctgcga
gccctcacatccccaagcagcgtgagctgcagtaaagagacaggcacacagagcagtgtg
gcggttcaagtgaagaacacagacaagctggtgtccacaaaattccgcattgatagtcaa
gaaatcctaaacagcctgacaaatgttgtggtcaatgggtcatcccatctcgatgtcagc
ttcctggagctgctttggcaaacatttgaaaacaagtctgatgatcaaagacgaagtaag
gtgatgcttgttttttcagatggcttggatgatgaggtggaagtacttgagcaaaaatca
gaagaactcagaaaaaaaggattggatgcactgataaccattgctctggaaggagtctct
aacattcacgagcttcaattcattgaatttggaaaaggatttgaatataggactcagtta
aatattgacatgagtaatattatgaacctgctgtccaagtatgtgaatgctgttgctgaa
aggaaatgctgctgtgtcttctgtaagtgcagtggaaacaggggtcctgctggacagcca
ggaagtaaaagagagaagggactaccaggcccaaaaggcagtcctggacactcaggagaa
gaaggagatccaggtccaagaggaccgactggaccaagaggagaaataggcactcagggc
tgtcaaggagtaaaaggcgttaaggggagccaaggaataggtggtcaaaagggagaagaa
ggggacggtggagttgatggaattgatggagaacagggatcgtatgggtttccagggaag
aagggagaaaggggtgatgatggttaccagggtagttcagggccaaaaggaccccctggt
gaacgtggtgagaagggttttcgaggagatcccgggacctctggattggacaatgatata
agagggcctaaaggttcaaaaggagaacggggaagacagggtgatagaggaccaaaaggg
tcagctggctctccgggctctagaaactctttgggaccagcaggtcaaaaaggacaacca
ggtataccgggtgtgaaaggagatcctggttttgatggctctaacggagatcaaggattt
agaggaccccagggacctggaggaattcaaggtgtgaaaggagatccagggagtcaagga
aataaaggtcctcaggggatcccaggaagtgaaggttcaaaagggaatcctggaagtcct
ggagtaagaggaagtaaaggagaaactggtgaacctggaccaaaaggacttgtaggacca
tatggttcccgggggatgcagggagaagatggtattgacatacaaggtagagtaggaaga
aaaggcgtaaagggacaaaatggatgccctggagatactggaatgcagggtgaaatgggt
gatgcaggaattcctggtgagcctggaccaaaaggaaatgtgggaaaaatgggccctgca
ggcaatgctgggaaaataggcgatccaggagacccaggacatcaaggacgtagggggcca
agaggaccaaaaggagagtcctcatttccagagtgtggcctaattaactatgtacgcaac
cacagccgttgttggagtgggaaaccagaatgtccagtgtatccaacagaactggtgttt
gccttagacttatctgaggatgtcacccctcagatattccaaaggatgaaagacatagtc
atatcaatagtgactgacaccagaacgagagacagcaactgccccattggagctagagtt
gccgtgatgcagtatggttcacatacacactacgtgatccgattctcagagttctacaac
aagaaacatttcattcaagaagtaaaaaatctgtctcatcagagatccaagactgtccgg
catattggcagtgctatgagatttattgccaggcatgtcttcaagagaactctgcaggct
cctaatgtaagaaaaatagcagtgtttttcagcaatgggccatctgcagatgcatctttg
attaatacagcggttctggagtatagagcattagatatcattccagtagttattgctttc
aatgatgtacccaatgtcaatcaggcctttaagatggatgacactggaaagtttcaggta
ataaatatagatccagaagggaactatataccatttttacaaccatttcttctctgcaca
ctgtgttatgacaagtgtaacccagatgcctcctgtatgcttcctgaaccctctccacca
cagacctatgtggatgctgctttcattttggatagctcctggaaaatgagcagtgatgaa
tttgagacagtgaaagtcttcctcagcaaagcacttgatgcctttgacatttcctcttac
ccagttatttctgctacaggtgatagagtagctatggtgagccatgctacaccaggtttc
aaacccaggacacacaagagtccagtaaagatggagtttgatttagtcacccacagcagt
aaactcttaatgcagaatcatataaaaaattctcttcaacagctgaatggagaagctgct
cttggatataccattgagtgggtaatggaaaatattttctcagaggctccaaacccaaga
gacaacaaattcatcattgtcatatctgctggagaaacaagttcatgggacaaggaaatg
ttaaaggaagcattgatgacagccaagtgccaaggatatgctctgtttgtaatttctttg
aggccattgtgtaatgacgaagaactggaagagcttgctagcattcccttagaacagcat
ttggttcagcttggcagaattcacaagcctgatcttggatacatagagagatttatgaaa
gcatttgtacgtctcttacgaagttcaattaacaggtatccaccagaggagcttaggaca
ccttgtgagactaccagttttccaagaccatccccttctgtcaaccacgctgaaggctca
gcagaagagtatgtctcagatgcatatcttgcagctgtaggacatttattcagcatgcta
caggctgacctccatgatgactttctagatactgattttatcagcactgcatatgaggat
tcagcaaccggaaacgaaacggagcatgctgatataacaaatagcagtaatgaagactgt
atatga
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integrated database retrieval system
