Alligator mississippiensis (American alligator): 102575271
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Entry
102575271 CDS
T03087
Symbol
TARDBP
Name
(RefSeq) TAR DNA binding protein
KO
K23600
TAR DNA-binding protein 43
Organism
amj
Alligator mississippiensis (American alligator)
Pathway
amj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
amj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102575271 (TARDBP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amj03019
]
102575271 (TARDBP)
Messenger RNA biogenesis [BR:
amj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
102575271 (TARDBP)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
DUF4651
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
102575271
NCBI-ProteinID:
XP_006259364
LinkDB
All DBs
Position
Un
AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPEAGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERGGRFGGNPGGFGNQGGFGNSRGGGGGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPSGNNQPQGNMQ
REQNQGFSSGNNSYGGSNSGAAIGWGSASNAGSSSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtacatccgagtcaccgaagacgagaatgacgagcccattgagatcccctcg
gaggatgatggcaccgtcttgctgtcgacggtcaccgcccagttcccaggagcgtgtggc
ttgcgttacaggaacccggtgtctcagtgtatgaggggagtccggctggtggaaggaatc
ctgcatgccccagaggctggctggggaaatctagtctatgtcgttaattatcccaaagat
aacaagagaaaaatggatgaaacagatgcgtcatcagcagtgaaagtgaaacgagcagtg
cagaagacttctgatttgatagttttgggccttccttggaaaaccactgaacaggatcta
aaggaatatttcagcacttttggagaagttctgatggtgcaggttaagaaagacattaaa
actggtcactcaaaagggtttggttttgttcgatttacggattatgaaacccaggtgaaa
gtgatgtctcagcgacacatgatagatggaagatggtgcgactgtaaacttcccaattcc
aagcaaagtcctgatgagcccttgcgtagcagaaaggtgtttgttggtcgctgcactgag
gacatgacagcagatgagctccgacagttcttttctcagtatggagaagtggtagatgtc
ttcattcccaaacccttccgagcttttgcttttgttacatttgcagatgatcaggttgcc
cagtctctttgtggagaagacttgatcattaaaggaatcagcgtacatatatccaatgct
gaacctaagcacaatagtaatagacagttagaaagaggtggaagatttggtggtaatcca
ggaggctttgggaatcaaggtggatttggtaacagcagagggggaggaggtgggttggga
aacaaccagggcagtaatatgggtggtgggatgaactttggagcctttagcatcaatcct
gctatgatggcagcagcccaagcagcattgcagagcagctggggaatgatgggcatgtta
gctagtcaacagaaccagtcaggtccatctggaaacaaccagcctcaaggcaacatgcaa
agggagcagaaccagggtttcagttcaggaaataactcttatggcggatccaactcgggg
gcagcaattggctggggctcagcatcaaatgcaggttcgagcagtgggtttaacggaggc
tttggttcaagtatggattccaaatcatcgggctggggtatgtag
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