Alteromonas macleodii Black Sea 11: AMBLS11_17030
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Entry
AMBLS11_17030 CDS
T02260
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amk
Alteromonas macleodii Black Sea 11
Pathway
amk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMBLS11_17030 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amk03021
]
AMBLS11_17030 (rpoB)
03400 DNA repair and recombination proteins [BR:
amk03400
]
AMBLS11_17030 (rpoB)
Enzymes [BR:
amk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMBLS11_17030 (rpoB)
Transcription machinery [BR:
amk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMBLS11_17030 (rpoB)
DNA repair and recombination proteins [BR:
amk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMBLS11_17030 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
SPG4
Motif
Other DBs
NCBI-ProteinID:
AFT79973
LinkDB
All DBs
Position
complement(4015304..4019332)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLEIPYLLSIQLDSFKKFIEIDADAQYGLEAAFRSVFPIK
SYSGSSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVLFDKDAAPGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALEMSSEEILDTFFDKVSVRIDKDKLMME
VVPDRLRGETAQFDIIDGEGNVVVETGRRISARHTRALEKAGLTELEVPADYLIGRVYAA
TYVNEDTGEVIVSANDELTLENLAALSQAGIKEFETLYINELDHGSYISDTLRIDSSTNR
LEALVEIYRMMRPGEPPTKDAAETLFDNLFFSDERYDLSSVGRMKFNRRLGREELIGAGT
LDKEDIIAVMKQLIMIRDGKDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNVMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLASFARTNDFGFLETPFRRIVDGVV
TDEIDYLSAIEEGQFAIAQANIALTEAGELVDDLIPCRHRGETTLMPKEDIKYMDVSPQQ
IVSIAASIIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERTIAVDSGVTVVAK
RGGVVDYVDASRIVIKVDEDEMLPGEAGIDIYNLTKYTRSNQNTCINQKPTCSVGDPIVA
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGPEEISSDIPNVGESALSKLDESGVVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDTSLRVPNSVHGTVIDVQVFTRDGVEKDKRALEIEDMQLRQVKKD
LTDEFEILADGIFARAQTALLRAGVDQAKLDSLPREKWFEIALNSEDAQLELDQIADQHA
EIKMDFDKKFEAKRRKITQGDDLAPGVLKIVKVYLAVKRHIQPGDKMAGRHGNKGVISTI
QPVEDMPYDADGTPVDIVLNPLGVPSRMNIGQILETHLGMAAHGLGVKIDRMIKEQRELA
ELRDFLKKVYELGENHQEVDIDSFTDHEVRRLAENLRKGVPVATPVFDGARESEIKEMLK
LADIPESGQIALFDGRTGREFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttatagcgaaaagaaacgtatccgtaaggattttggcaaacgcccacag
gtattggaaattccataccttctttcaattcagcttgattctttcaaaaagtttattgag
atcgatgcagatgctcaatacggtttggaagcagcatttcgttccgtttttccaattaaa
agctactcaggtagttcagagcttcaatatgtaagctaccgcctgggagagcccgttttc
gacgttaaagaatgtcaaattcgcggcgtaactttctctgctccattaagagtaaaacta
cggttagtgttgttcgataaagacgctgcgccaggtaccgtaaaagatattaaagaacaa
gaagtgtacatgggcgagatcccattgatgactgagaacggtacgttcgttatcaatggt
acagagcgtgttatcgtgtcacagctacaccgttcacctggtgtattctttgatcacgac
aaaggtaaaacccactcgtcaggtaaagtgctttataacgcacgtgtaattccttaccgt
ggttcgtggttagacttcgagtttgacccgaaagataacctattcgtacgtatcgaccgt
cgtcgtaagttgcctgcaacgattatcttacgcgcacttgaaatgtcatcagaagaaatc
ctagatactttcttcgacaaagtaagcgtacgtatcgacaaagacaagctaatgatggaa
gtggtgccagatcgccttcgtggtgaaactgcccaattcgatatcattgacggtgaaggc
aacgttgttgttgaaactggtcgtcgtatttctgcgcgccacacgcgtgcactagaaaaa
gccggtcttacagagcttgaagttccagccgattacctaattggccgtgtttacgctgct
acttacgtaaacgaagatactggcgaagttatcgtaagcgcgaacgacgagttaaccctt
gaaaacctagcggcacttagccaagcgggtatcaaagagttcgaaacgctttacatcaac
gaactagaccacggttcatacatttcagatacgctacgtatcgattcttcaactaaccgc
ctcgaagcactagttgaaatttaccgtatgatgcgtcctggtgagccaccaacaaaagat
gcagctgaaaccttgttcgataacttgttcttctctgacgaacgttacgatctatcttct
gttggccgcatgaagttcaaccgccgtcttggccgtgaagaactaattggtgctggtaca
ctagataaagaagacattattgctgtaatgaagcagctaataatgattcgtgacggtaaa
gatgaagttgatgacatcgatcacctaggtaaccgtcgtattcgttctgtaggtgaaatg
gcagagaaccaattccgcgttggtcttgtacgtgttgagcgtgcagttaaagagcgtcta
agcttaggcgacctagacaacgtgatgccacaagatctaattaacgctaagcctatttca
gctgcggttaaagagttcttcggttcatctcagctatctcagttcatggaccaaaacaac
ccgctttcagaagtaacgcataagcgtcgtatttctgcattaggcccgggtggtcttaca
cgtgaacgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgtctatgt
ccaatcgaaacgccggaaggcccgaacatcggtctaattaactcattggcaagcttcgcg
cgtaccaatgacttcggtttcctagaaacgccgttccgtcgcattgttgacggtgtggtg
acagacgaaatcgattacttatctgcaattgaagaaggtcaattcgcaatcgctcaggca
aacatcgcgttgactgaagcaggcgagttggttgacgacctaattccatgtcgtcaccgt
ggtgaaactactttgatgcctaaagaagacatcaagtacatggacgtttcacctcagcaa
atcgtttcaattgctgcaagcattatcccattcctagagcacgatgatgcgaaccgtgca
ctaatgggtgcgaacatgcaacgtcaggcagtacctacactacgcgctgataagccgcta
gttggtaccggtatggaaagaactatcgcggttgactcaggtgttactgtagttgctaag
cgcggtggtgtggttgattacgtagatgccagccgtatcgttattaaagtagacgaagac
gaaatgcttccaggtgaagcgggtatcgatatctacaacctgactaagtacactcgttct
aaccaaaacacgtgtatcaatcagaagcctacttgtagtgttggcgacccgattgttgca
ggcgacgtgctagctgatggtccttcaacagacctaggtgaccttgcacttggtcagaac
atgcgtatcgcgttcatgccgtggaatggttacaactttgaggattcaatccttatttct
gagcgtgtagcgcaggaagaccgttttacaactatccacattcaagagcttagctgtatc
gctcgtgatactaagcttgggccagaagagatttcttctgatatccctaacgtgggtgaa
tctgcacttagcaagcttgatgaatcaggcgttgtttacatcggtgcggaagtgaaaggc
ggtgatatccttgtaggtaaagtaacgcctaaaggtgaaacgcagcttacgccagaagag
aaactactacgtgcaatcttcggtgagaaagcgtctgacgtcaaagatacgtctctacgt
gtacctaactctgttcacggtacggtaatcgacgttcaagtatttacccgtgacggtgta
gagaaagacaaacgcgcgctagaaattgaagatatgcagctacgtcaggttaagaaagac
cttactgacgagtttgaaattcttgcagacggtatctttgcacgtgcacaaactgcactt
ctacgtgctggtgttgaccaagctaagcttgacagcctgccgcgtgaaaagtggtttgaa
attgcacttaacagcgaagatgcacagctagagctagaccaaattgccgatcagcacgca
gaaatcaaaatggacttcgataagaagtttgaagcgaagcgtcgtaagatcactcaaggc
gatgacctagcccctggcgtgcttaagatcgttaaggtttaccttgcggttaaacgtcac
atccaaccaggtgacaagatggccggtcgtcacggtaacaaaggtgttatctcgactatc
cagcctgtagaagacatgccatacgatgctgacggtacgccggtagacatcgttcttaac
ccactaggtgtaccgtctcgtatgaacatcggtcagatcctagaaactcacttgggtatg
gctgcacacggtcttggtgtgaagattgatcgcatgatcaaagagcagcgcgagctggcg
gaactacgtgacttcttgaagaaggtgtacgagcttggtgagaatcaccaagaagttgac
atcgatagcttcacagaccacgaagttcgtcgcctagcggaaaaccttcgtaagggtgtt
ccagtagcaacacctgtattcgacggtgctcgtgaatctgaaatcaaagaaatgctgaag
cttgctgatattccagaaagcggtcagattgctttgtttgacggtcgtaccggtcgcgaa
tttgagcgtccagttacggttggttacatgtacatgctgaaactgaaccacttagtagac
gacaaaatgcacgcgcgttctaccggttcttacagccttgttacacagcagcctcttggt
ggtaaagcacagttcggaggtcagcgcttcggtgagatggaagtgtgggcacttgaagcg
tacggtgcagcatatacccttcaagaaatgcttaccgttaagtcggatgacgttaacggc
cgtaccaagatgtacaagaacatcgtcgatggcgaccacagaatggaacctggcatgcca
gagtcattcaacgtactacttaaagaaattcgctcgttgggtatcaacatcgagcttgaa
gaaaagtaa
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