KEGG   Alteromonas macleodii Black Sea 11: AMBLS11_17290
Entry
AMBLS11_17290     CDS       T02260                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
amk  Alteromonas macleodii Black Sea 11
Pathway
amk02024  Quorum sensing
amk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:amk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AMBLS11_17290
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    AMBLS11_17290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:amk03019]
    AMBLS11_17290
   03036 Chromosome and associated proteins [BR:amk03036]
    AMBLS11_17290
Messenger RNA biogenesis [BR:amk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     AMBLS11_17290
Chromosome and associated proteins [BR:amk03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    AMBLS11_17290
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AFT80023
LinkDB
Position
complement(4075410..4075658)
AA seq 82 aa
MAKGQSLQDPFLNALRKERIPVSIYLVNGIKLQGQVESFDQFVILLKNTVSQMVYKHAIS
TVVPARAITMPSAGDSENTKGE
NT seq 249 nt   +upstreamnt  +downstreamnt
atggctaaagggcaatctttacaagacccattcttgaacgctttgcgtaaggaacgtatt
ccagtatcaatttatctggtaaacggtattaaacttcaggggcaggttgaatcgttcgac
cagttcgtaattctactgaagaacacagtaagccaaatggtgtataagcacgcgatttct
actgttgttccagcacgcgctatcacaatgcctagcgcaggagattctgaaaatactaaa
ggtgaataa

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