Amycolatopsis methanolica: AMETH_0641
Help
Entry
AMETH_0641 CDS
T03230
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
amq
Amycolatopsis methanolica
Pathway
amq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
amq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMETH_0641 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amq03021
]
AMETH_0641 (rpoB)
03400 DNA repair and recombination proteins [BR:
amq03400
]
AMETH_0641 (rpoB)
Enzymes [BR:
amq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMETH_0641 (rpoB)
Transcription machinery [BR:
amq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMETH_0641 (rpoB)
DNA repair and recombination proteins [BR:
amq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMETH_0641 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AIJ20733
UniProt:
A0A076MIP3
LinkDB
All DBs
Position
647521..651021
Genome browser
AA seq
1166 aa
AA seq
DB search
MAVSPANQATAATTSAVTEPNPTGIPGAPKRVSFAKIREPLPTPNLLDVQIQSFQWFTGD
EKWFERRVNEGEENPVGGLEEVLNEISPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDM
TYAAPLFVTAEFVNNNTGEIKSQTVFMGDFPVMTEKGTFIINGTERVVVSQLVRSPGVYF
DTSVDKTTDKDVFSVKIIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQ
IRERFHFSETLLATLEKDHTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYD
LAKVGRYKLNKKLGLNLPYETGTLTEEDIVSTIEYLVRLHAGETKMGEGENEVPVEVDDI
DHFGNRRIRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEF
FGTSQLSQFMDQNNPLSGLTHKRRLNALGPGGLSRERAGMEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLCSYARVNPFGFIETPYRKVVEGRVTDQVDYLTADEEDRYVKAQANAPLTE
DGHFAEAQVLGRRKGGEVELLDPLEIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGAN
MQRQAVPLLRAESPLVGTGMELRAAVDAGDVLVAEQAGVVEELSADLVTIMHDDGTRKSY
GLHKFRRTNAGTCFNHRPIVSEGDRVEAGQVIADGPSTDQGEMALGKNLLVAIMPWEGHN
YEDAIILSERLVQDDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSEEVLADLDERGIV
RIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGV
RVFSREEDDELPPGVNELVRVYVAQKRKIQPGDKLAGRHGNKGVIGKILPVEDMPFMEDG
TPVDIILNTHGVPRRMNIGQILELHLGWLASQGWKIEGNPEWAQNLSEELYDVEPGTNTA
TPVFDGAREEELTGLLASTRPNRDGERMVKENGKATLLDGRSGEPFPYPVAVGYMYILKL
HHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKS
DDVVGRVKVYEAIVKGENIPDPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDSDDE
DLERAAANLGINLSRNESPSVDDVVQ
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctcccgcgaaccaggccactgctgcgaccacctcggctgtaacggagccg
aacccgacgggaattcccggagcccccaagcgggtctcgttcgcgaagatccgcgagccc
ctccccacccccaacctgctggacgtgcagatccagtccttccagtggttcaccggtgac
gagaagtggttcgagcgccgcgtgaacgagggcgaggagaaccccgtcggcggcctcgaa
gaggtcctcaacgagatctcgccgatcgaggacttctccggttcgatgtccctgtccttc
tccgacccgcgcttcgacgaggtcaaggcctccgtcgaggagtgcaaggacaaggacatg
acgtacgcggccccgctgttcgtgaccgccgagttcgtcaacaacaacaccggcgagatc
aagtcccagaccgtcttcatgggcgactttcccgtgatgaccgagaagggcaccttcatc
atcaacggcaccgagcgtgtcgtggtgtcccagctggtccggtcgcccggcgtctacttc
gacaccagcgtcgacaagaccaccgacaaggacgtcttcagcgtcaagatcatcccgagc
cgcggcgcgtggctcgagttcgacgtggacaagcgcgacaccgtcggcgtccgcatcgac
cgcaagcgccgccagccggtcaccgtgctgctgaaggcgctgggctggaccaccgagcag
atccgcgagcggttccacttctcggagaccctgctcgcgacgctcgagaaggaccacacg
gcgggcaccgacgaggcgctgctcgacatctaccgcaagctgcgcccgggcgagccgccg
accaaggagagcgcccagacactcctggagaacctgttcttcaaggagaagcgctacgac
ctggccaaggtcggccgctacaagctgaacaagaagctgggcctgaacctgccgtacgag
accggcaccctcaccgaagaggacatcgtctcgaccatcgagtacctggtccgcctgcac
gctggcgagaccaagatgggcgagggcgagaacgaggtcccggtcgaggtcgacgacatc
gaccacttcggcaaccgccgcatccgcaccgtcggcgagctgatccagaaccagatccgg
gtcggcctgtcccgcatggagcgcgtcgtccgcgagcggatgaccacgcaggacgtcgag
gcgatcacgccgcagaccctgatcaacatccgccccgtggtggctgcgatcaaggagttc
ttcggcacctcgcagctgtcgcagttcatggaccagaacaacccgctgtcgggcctgacc
cacaagcgccgcctcaacgcgctgggcccgggtggtctgtcccgtgagcgcgccggcatg
gaggtccgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacgccggaa
ggcccgaacatcggcctgatcggctcgctgtgctcctacgcgcgggtcaacccgttcggc
ttcatcgagacgccgtaccggaaggtcgtcgagggccgggtcaccgaccaggtcgactac
ctgaccgccgacgaggaggaccgctacgtcaaggcgcaggccaacgcgccgctgaccgag
gacggtcacttcgccgaggcccaggtcctgggtcgacgcaagggtggcgaggtcgagctg
ctcgacccgctggagatcgactacatggacgtgtcgccgcgtcagatggtgtcggtcgcc
accgcgatgatcccgttcctcgagcacgacgacgccaaccgcgcgctgatgggtgccaac
atgcagcgccaggccgtgccgctgctgcgcgccgagtcgccgctggtcggcaccggcatg
gagctgcgtgccgcggtcgacgccggtgacgtgctcgtcgccgagcaggccggtgtcgtc
gaggagctctcggccgacctcgtgacgatcatgcacgacgacggcacccgcaagagctac
ggactgcacaagttccgccgcaccaacgcgggcacctgcttcaaccaccgtccgatcgtg
tcggagggcgatcgcgtcgaggccggccaggtcatcgccgacggcccgtccaccgaccag
ggcgagatggcgctcggcaagaacctgctcgtggcgatcatgccgtgggagggccacaac
tacgaggacgcgatcatcctctccgagcgcctggtgcaggacgacgtgctcacctcaatc
cacatcgaggagcacgagatcgacgcccgcgacaccaagctcggcgccgaggagatcacc
cgggacatcccgaacgtctccgaggaggtcctggcggacctggacgagcgcggcatcgtg
cgcatcggcgcggaggtccgcgacggcgacatcctggtcgggaaggtcacgccgaagggc
gagaccgagctgaccccggaggagcgcctgctccgcgcgatcttcggcgagaaggcccgc
gaggtccgcgacacgtcgctgaaggtgccgcacggcgagaccggcaaggtcatcggcgtc
cgcgtgttctcccgcgaggaggacgacgagctgcccccgggcgtgaacgagctcgtccgc
gtctacgtcgcgcagaagcggaagatccagccgggcgacaagctcgccggccgccacggc
aacaagggtgtcatcggcaagatcctgccggtcgaggacatgccgttcatggaggacggc
accccggtcgacatcatcctgaacacccacggtgtgccgcgacggatgaacatcggccag
atcctcgagctgcacctgggctggctcgcctcgcagggctggaagatcgagggcaacccg
gagtgggcgcagaacctctccgaggagctctacgacgtcgagcccggcacgaacaccgcg
accccggtgttcgacggcgcgcgggaagaggagctcaccggcctgctcgcgtcgacccgg
cccaaccgggacggcgagcgcatggtcaaggagaacggcaaggcgacgctgttggacggc
cgttccggcgagccgttcccgtacccggtggccgtcggctacatgtacatcctcaagctg
caccacctggtggacgacaagatccacgcccgttccaccggcccgtactcgatgatcacc
cagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgagatggagtgc
tgggcgatgcaggcctacggcgcggcctacacgctgcaggagctgctgacgatcaagtcg
gacgacgtggtcggccgcgtgaaggtgtacgaggcgatcgtcaagggcgagaacatcccc
gacccgggcatcccggagtcgttcaaggttctcctcaaggagctgcagtcgctgtgcctg
aacgtggaggtcctctccagcgacggcgcggcgatcgagatgcgcgactccgacgacgag
gacctggagcgcgccgccgccaacctcggcatcaacctgtcccgcaacgagtcgccctcg
gtggacgacgtcgtgcaatga
DBGET
integrated database retrieval system
