Amycolatopsis sp. YIM 10: YIM_01455
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Entry
YIM_01455 CDS
T06270
Symbol
sigF1
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
amyy
Amycolatopsis sp. YIM 10
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyy03021
]
YIM_01455 (sigF1)
Transcription machinery [BR:
amyy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
YIM_01455 (sigF1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_3
HTH_Crp_2
MarR_2
MarR
Sigma70_ECF
KORA
HTH_31
HTH_24
UBA_2
HTH_28
HTH_37
HNF-1_N
HTH_Tnp_4
Trp_repressor
Motif
Other DBs
NCBI-ProteinID:
QFU85523
UniProt:
A0A5P9PBI4
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All DBs
Position
complement(298421..299209)
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AA seq
262 aa
AA seq
DB search
MTGIQPPDTNGYEHLAPLFGEMAALAEDDPRRGEVRDKLVTGYLPLAEHIAQRFAGRGVA
KEDLVQVARVGLINAVDRFDAERGFDFLSFAVPTVMGEVRRHFRDTGWVIRVPRRLKELH
LTISNASTELAQRLGRAPTPSELASHLGIDKDEVYEGLEAGNAYHSMSLDEVLSGDTDNV
SLGDTLGEEDSALADVENHEMLQPLIRDLPERERKILALRFVHNLTQTQIAEKIGVSQMH
VSRLLARTLTQLREGLSHRPGE
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
gtgacgggaatccagccgccggacaccaacgggtacgagcacctcgcaccactgttcggc
gagatggccgcgctggccgaggacgatccgcggcgcggggaggtgcgcgacaagctggtg
accgggtacctgccgctggccgagcacatcgcccagcgcttcgccggtcgcggggtggcc
aaggaggacctggtccaggtagccagggtcggcctgatcaacgcggtggaccggttcgac
gccgagcgcggcttcgacttcctgtccttcgccgtgccgacggtgatgggcgaggtgcgg
cggcacttccgcgacaccggctgggtgatccgggtgccgaggcggctcaaggaactgcac
ctgacgatcagcaacgccagcaccgagctggcgcaacggctgggccgtgcgccgacgccg
agcgagctggcttcgcacctcggcatcgacaaggacgaggtgtacgagggcctggaggcg
ggcaacgcctaccactcgatgtcgctcgacgaggtgctctccggggacaccgacaacgtc
tcgctcggcgacacgctcggcgaggaggacagcgcgctcgcggacgtggagaaccacgag
atgctccagccgctgatccgcgacctgcccgaacgcgagcggaagatcctggcgctgcgg
ttcgtgcacaacctgacgcagacgcagatcgcggagaagatcggcgtctcgcagatgcac
gtctcgcggctgctcgcccgcacgctcacccaactccgtgaagggctcagccaccgcccc
ggcgaatga
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