Anaerocolumna sedimenticola: Ana3638_07090
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Entry
Ana3638_07090 CDS
T06399
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
anr
Anaerocolumna sedimenticola
Pathway
anr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
anr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Ana3638_07090 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
anr03021
]
Ana3638_07090 (rpoD)
Transcription machinery [BR:
anr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Ana3638_07090 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
QHQ60563
UniProt:
A0A6P1TJE1
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All DBs
Position
complement(1585994..1587109)
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AA seq
371 aa
AA seq
DB search
MSEVAHNFEEKLRELLSYANDNKGVVEIGKVNDFFKEMNLDVRQIDKIYEYLEAHNIVIL
NPIEEDEPDDEIIMELEDSDEAALLDLDDFSMVGTMSDDPVKLYLKEIGSYPLLSVAEEI
ELAKKIEEGDAHAKQVLAESNLRLVVSIAKRYVGRGLSFLDLIQEGNLGLIKAVDKFDYN
KGYKFSTYATWWIRQAITRSIADQSRTIRIPVHMSEVINKTYRVSRSLLQELGREPSEQE
IADAMKLPIEKVREILKVSADPISLDTPIGEEDDSHLGDFIKDDSIMGPEDAASYSVLQD
QISKLLETLTEREQRVLILRFGLKDGRTRTLEEVGKEFNVTRERIRQIEAKALRKLRHPS
RARMLKGYDIM
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaagtagcacataattttgaagaaaaattaagagaattattatcctatgccaat
gataataaaggtgttgttgaaataggtaaggtaaatgacttttttaaagagatgaacctg
gatgtcaggcaaattgataaaatatatgagtatcttgaagcacacaatattgtaattcta
aatcctattgaagaagacgaaccggacgatgaaattataatggaattagaagacagcgat
gaagctgcccttttagatttagatgatttctccatggtgggaacgatgtccgatgacccg
gttaagttatatttaaaggaaatcggcagttatcctctgttgtccgttgcagaagagatt
gagcttgccaagaaaattgaagaaggagatgctcatgcaaagcaggtattagcagaatcc
aatctaaggttagtggtaagtatagcaaaacgttatgttggccgcgggttatcttttctg
gatttaattcaggagggtaatttaggcttaataaaagcggtagataaatttgattataat
aaagggtataaattcagtacctatgctacctggtggatccgtcaggcaattaccagatcc
atagccgatcagtcacgtaccattcgtattccggtacatatgtctgaggtaattaataaa
acttaccgtgtatccagaagtcttctacaggaattgggccgtgagccttccgaacaggaa
attgctgacgctatgaaacttcctattgaaaaagtcagagagattcttaaagtttctgct
gatcctatttctttggatacaccaattggtgaggaagatgacagccatttaggagatttt
attaaagacgattccattatgggaccggaagatgctgcttcctattccgtattgcaggat
cagatatctaaattactggaaacattaacagaacgggagcaacgagtgctaatcctgaga
tttgggttaaaagacggtaggaccaggactttggaggaagttggcaaggaatttaacgta
actcgtgaaagaatcaggcagattgaagcaaaagctttaagaaaattaaggcatcccagc
agagcaagaatgctaaaaggttacgatatcatgtaa
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