Arvicanthis niloticus (African grass rat): 117693496
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Entry
117693496 CDS
T08817
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04151
PI3K-Akt signaling pathway
anu04510
Focal adhesion
anu04512
ECM-receptor interaction
anu04518
Integrin signaling
anu04820
Cytoskeleton in muscle cells
anu04974
Protein digestion and absorption
anu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
117693496
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117693496
04518 Integrin signaling
117693496
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117693496
09142 Cell motility
04820 Cytoskeleton in muscle cells
117693496
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
117693496
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
117693496
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
anu04147
]
117693496
00536 Glycosaminoglycan binding proteins [BR:
anu00536
]
117693496
Exosome [BR:
anu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117693496
Glycosaminoglycan binding proteins [BR:
anu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117693496
Hyaluronan
Extracellular matrix or blood plasma proteins
117693496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
Radical_SAM
Integrin_beta
Catalase_C
Motif
Other DBs
NCBI-GeneID:
117693496
NCBI-ProteinID:
XP_034340069
LinkDB
All DBs
Position
21:complement(25896198..26030407)
Genome browser
AA seq
2265 aa
AA seq
DB search
MLLILFLVMICFHVCVNQDSGPEYADVVFLVDSSDHLGIKSFPLVKTFIHKMISSLPIEA
NKYRVALAQYSDALHSEFQLGTFKNRNPMLNHLKKNFGFIGGSLKIGNALKEAHRTYFSA
PTNGRDKKQFPPILVVLASAESEDDVEEASKALREDGVKIISVGVQKASEENLKAMATSQ
FHFNLRTARDLSMFAPNMTQIIKDVTQYREGMADDIIVETCQGPSVADVVFLLDMAINGS
QEDLDHLKAFLGESVSALDIKENCMRVGLVAYSNETRVISSLSTGINKTEVLQRIQDLSP
HVGQAYTGAALRKARKELFSAQRGSRKNQGVPQIAVLVTHRASEDNVTKAAVNLRREGVT
IFTMGIEGANPDQLEKIASYPAEQFTSKLNNFSELATHNQTFLKKLRNQITHTVSVFSER
TEALKSACVDTEEADLYLLIDGSGNTQPTDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYA
DSWDLEFEISKYTNKPDLGKAIENIRQMGGNTNTGAALNFTLKLLQKAKKERGSKVPCHL
VVLTNGMSQDSVLEPAHKLREENIRVYAIGVKEANQTQLLEIAGEEKRVYYVHEFDALRD
IRNQVVQEICAEEACRDMKADIMFLVDSSGSIGLENFSKMKMFMKNLVSKSQIGADRVQI
GVVQFSHENKEEFQLNTFMSQSAIANAIDQMTHIGETTLTGSALTFVSQYFSPDKGARPN
VRKFLILITDGEAQDIVRDPAVALRQEGVIIYSVGVFGSNVTQLEEISGKPEMVFYVENF
DILQHIEDDLVLGICSPREECKRIEVLDVVFVIDSSGSIDYQEYNIMKDFMIGLVKKADV
GKNQVRFGALKYADDPEVLFYLDELGTKLEVISVLQNDHPIGGNTYTAEALAFSDHMFTE
ARGSRLHKGVPQVLIVITDGESHDAEKLNATAKALRDKGILVLAVGIAGANSWELLAMAG
SSDKYYFVETFGGLQGIFSDVSASVCNSSKVDCEIEKVDLVFLMDGSNSIHPDDFQKMKE
FLASVVQDFDVSLNRVRVGVAQFSDSYRSEFLLGTFTGEREISTRIEGIQQIFGYTHIGD
ALRKVKHYFQPDTGSRINAGTPQVLLVLTDGRSQDEVAQAAEELRHKGVDIYSVGIGDVD
DQQLIQITGTAEKKLTVNNFDELKKVKKRIVRNICTSSGESNCFVDVVVGFDISSQQRGQ
TLLEGQPWMGTYLQDLLRAISSLNGVSCEVGTETQVSIAFQVTNAMERYPSKFEIYSENI
LNSLQGVTVNGPSRLNTNLLSSLWDTFQNKSAARGKVVLLFSDGLDDGVEKLEQKSDELR
KEGLNALITIAVDGAADSSDLADLLFIEFGKGFEYRTQFTIGMRDLGSQLSKQLINVAER
TCCCLLCKCTGGDGAMGDPGSAGKKGPPGFKGSEGYLGEEGIAGERGASGPMGEQGTKGC
LGAKGPKGARGLGGEEGEVGEDGLDGLDGEQGDSGIPGRRGERGDEGSQGSPGKRGASGD
RGAKGLRGDPGTPGRDSSIQGPKGLKGDFGRQGRRGWPGSPGTPGSRKKKVVHGRRGHTG
PQGYPGITGPDGLEGSPGLKGPQGPRGEVGEKGEKGDLGMKGPQGPPGPEGQAGNQGHWG
SQGNKGEPGDLGEKGTAGFPGPRGLQGDDGSPGYGSIGRKGTKGQEGFPGESGPKGDMGD
PGDPGETGPKGVRGKTVSAGIPGEPGSPGEPGPPGRKGMKGARGLASFSTCDLIQYVRDH
SPGRHEKPECPVHPTELVFVLDQSRDVTEQDFERMKEMMVSLVRDVKVREASCPVGARVA
ILAYNSHTRYLIRFSDAYRKDQLLREIKALPYERSSDSREIGKAMRFISRNVFKRTLPGA
HVRRIATFFSNGQSADAQTITTAAMEFSALDIVPVVIAFRNVPSVKRAFSIDDTGTFQVI
VVPSGSDEVPALERLQRCTFCYDLCKPDASCDQAKPPPIQSYLDAAFLLDGSRHMGSAEF
EDMRDFLEALLDHFEITSEPETSVTGDRVALLSHAPLGFLPNTQRSPVRSEFNLTTYSSK
RLMKRHVGQAVQQLNGDAFLGHALRWALDNVFLNTPNLRRNKVIFVISAGETSLLDAETL
KKESLRAKCHGYALFVFSLGPDWNDKELEDLPSHPVDQHLIQLGRIHKPDHGYSVKFVKS
FISSIRHGINKYPPVNFKAQCNRLRSTDLKPPPRQFRSFVPGPQKAILKDHAPEAAKLFQ
DKKRLSSILRGGRAAISSLSRSTHYTFKQGKEAMKATSKLSKRSD
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgattttgttcctggtgatgatttgtttccatgtgtgtgtgaatcaagattct
ggtcctgaatatgcagatgtggtatttctggtggacagttcagatcacctagggattaag
tcctttcctcttgtgaaaactttcatccacaagatgatcagcagcctccccatagaggcc
aacaagtaccgcgtggccctggcccagtacagtgatgctctccacagtgagttccagctg
ggcaccttcaagaacaggaaccccatgctgaaccacctgaagaagaactttgggttcatc
ggtgggtccctgaagatagggaatgccctgaaggaggcacacaggacctatttctctgct
cccacaaatggaagagacaagaaacagttccctccaatcctggtggtgctggcttcagca
gagtctgaggatgatgtggaagaggcttcaaaggccctgcgggaagatggggtgaaaatc
atctctgtgggggtacagaaggcttctgaggaaaacctgaaggccatggccacctctcag
ttccatttcaacctcaggactgccagagacctcagcatgtttgccccaaacatgacacag
atcatcaaggatgtgactcagtacagggaaggaatggctgatgacattattgtagaaact
tgccaaggcccttctgtggctgatgtggtgttcctgttggatatggccatcaatggcagc
caagaggacctagatcatcttaaagcattcctgggggaaagtgtctctgcccttgacata
aaggaaaattgcatgagggttggcttggtggcctacagcaacgagacaagggtgatcagt
tctctgagcaccggtatcaacaagacggaagtcttgcagcgcatacaggatctgtctcct
catgtagggcaggcctatactggagctgccctcagaaaggctagaaaggaactcttcagt
gcacagaggggcagccggaagaaccaaggagtgcctcagattgctgtgctggtaacccac
agagcttcagaagacaacgtgaccaaggcagctgtcaacctccggcgggagggagtgacc
atctttaccatgggcatagagggggctaacccagaccagctggagaagatcgcatcctac
cctgctgagcagttcacctctaaactgaacaacttctctgagctggccacccacaaccag
accttcctgaagaagctgcggaaccaaatcacacacacggtctctgtcttctcagaacgg
actgaggccctcaaatctgcctgcgtggacacagaggaagctgatctctatctgctcatt
gacggttcagggaacacccagcccacagatttccatgaaatgaagaccttcctgtcagag
gtggtgggcatgttcaacattgctccccacaaggtgcgagtaggggctgtgcagtacgct
gacagctgggacttggaatttgagatctctaagtatactaacaagcctgacttggggaag
gccatcgagaacatcaggcagatgggtgggaataccaacacgggtgcagccctgaacttc
acactgaagctgttgcaaaaagcaaagaaggagcgaggaagcaaagtgccatgtcacctg
gtggttctgacaaacggcatgtcccaggacagcgtcctggagcctgcacataagctgaga
gaggaaaacatccgagtgtatgcgattggcgtcaaggaagccaaccaaacacagctgctg
gagatagcgggagaggaaaagcgagtttactacgtccatgagttcgatgccttgagggac
ataaggaaccaggtggttcaggaaatctgtgctgaagaagcctgcagagacatgaaagcg
gacatcatgtttctggtggacagttctggcagcatcggacttgaaaacttcagcaagatg
aagatgtttatgaagaacctggtgagcaaatcccagatcggggctgaccgggtgcaaatt
ggcgtggtccagttcagccatgaaaacaaggaggagtttcagctcaacacattcatgtct
caaagtgccatagccaacgccattgaccaaatgactcacattggagaaacaaccttgaca
ggcagtgccctgacctttgtgtctcagtacttcagtcccgacaagggggctcggcccaat
gtcaggaagttcctcattcttatcacggatggagaggctcaggacatagtaagggaccca
gcagtagcccttcgccaagaaggtgtgattatctattccgtgggagtatttggctccaat
gtcacccagctggaggagatcagtgggaagccagagatggttttctatgttgagaatttt
gacattctgcagcatattgaagatgatcttgttctgggaatctgcagtccccgtgaagaa
tgcaagcggattgaagttttggatgtggtgtttgtcatcgatagctccggcagcattgac
tatcaggagtataacatcatgaaggacttcatgattggcttggtgaaaaaagctgatgtg
ggcaagaatcaggtccggtttggagctctgaagtatgctgatgacccagaagtgctgttt
tacctagatgaactaggcacaaagctggaggtgatttcagtgctccagaatgaccatcct
ataggtggaaatacttacactgctgaggccctggccttctccgatcacatgttcaccgaa
gcccggggcagccgtctgcacaagggagtcccccaagtcctcattgtgattaccgatgga
gagtcccatgatgcagagaagctcaatgccaccgccaaggccctgagggacaaaggcatt
cttgtcctggctgtggggattgccggtgccaatagctgggagctcttggccatggcaggg
tcgagtgacaagtactactttgtcgagacatttggaggcctgcaggggatattttctgat
gtgtcagccagtgtctgtaactcttcaaaagtcgattgtgaaattgaaaaggttgacctt
gtattcctcatggacggttcaaacagcatccatccggatgactttcagaagatgaaggag
tttttggcatcagtcgttcaagacttcgatgtcagcctcaacagagtccgtgtaggagtg
gcacagttcagcgacagctacaggtcagagtttctgctggggacgttcacaggggagagg
gagatatccacacggattgagggcatccagcagatctttggatacacccacatcggagac
gccctcaggaaggtgaaacattactttcagccagacacaggcagcaggatcaacgcaggt
acccctcaggtgctgctggtccttacagatggccggtcccaagacgaggtagctcaggct
gctgaggagctgagacacaaaggtgtggacatctattcagtgggtatcggggatgtggac
gaccagcagctgatccagatcacggggacagcggagaaaaaattgacagtgaataacttc
gacgagctaaaaaaggtgaagaaaaggatcgttcgtaacatctgtacctcaagtggtgag
agcaattgttttgtggatgttgtggttggatttgatatctcaagtcagcagagagggcag
actttgctcgaaggtcagccttggatgggaacctaccttcaagatctcttacgtgccatc
agctccctcaatggggtaagctgtgaggtgggcacagagactcaggtgagcatagctttt
caagtgacgaatgctatggaaagatacccatccaagtttgagatctacagtgagaacata
ctgaacagcctgcagggtgtgacagtgaacggcccatctcgcctcaacacaaacctgctg
agttctctgtgggatacatttcagaataagtccgctgctcgagggaaggtggtccttcta
ttttcagatggactggatgatggcgttgagaaacttgaacagaagtctgatgaactcaga
aaggaaggcctgaacgccctcataaccattgctgtggatggagccgccgattccagtgac
ctggccgaccttctcttcattgaatttgggaaaggatttgagtacagaacacagttcaca
attggaatgagggatcttgggagtcagctgtcaaagcaactaatcaacgttgcagaaagg
acctgctgctgtctgctctgcaagtgcacaggaggggatggcgccatgggggatccaggc
tcagcaggaaaaaagggacccccaggattcaaaggcagtgaaggctacctgggagaagag
ggcattgctggagaaagaggagcctctggaccaatgggagagcaaggtacgaagggatgc
ctcggagccaaagggcctaagggagccagaggactcggtggagaagagggtgaagttggg
gaagatgggcttgacggactagatggagaacagggtgacagtgggattcctggaagaaga
ggagaacggggtgatgagggatctcagggaagcccaggcaagaggggggcttctggtgac
cgtggagcaaagggcctgcgaggagatccgggaacccctggacgtgatagtagcatacaa
ggacccaagggcttgaaaggcgactttggaagacaaggcagaagaggctggccaggctct
cctggaacaccaggctcaagaaaaaagaaggtagttcatggccgaagaggacatacaggc
ccacagggttatccaggcatcacaggcccagatggacttgaaggttcaccaggacttaag
gggccacagggtccaagaggagaggtcggtgagaaaggagaaaaaggagacctgggaatg
aaaggtccccaggggcctccaggacccgaaggacaagctgggaaccaaggccattgggga
agccagggaaacaaaggagaacctggagacctgggggaaaagggaactgctggttttcca
ggtcctcggggcctgcagggtgacgacggcagcccagggtatggtagcattggccgcaaa
gggacaaaggggcaagaaggattccccggagagagtggaccgaagggtgatatgggggat
cctggtgatccaggagagactggtcccaagggagtcagaggcaaaacggtatctgctggg
attccaggagagccaggatcccctggggagccaggaccccctggacggaagggcatgaaa
ggggcccgaggactggcttcattttccacatgtgacctcattcagtatgtgcgggaccac
agtcctggcagacatgaaaaacctgagtgcccagtgcatccaactgagttggtgtttgtc
ctggaccagtcccgggatgtcacagagcaggactttgaacggatgaaggagatgatggtc
tccctagttagggatgtcaaagttagggaggccagctgccccgtgggtgcccgagttgct
atcttagcctacaactcccacaccaggtacctcatccgcttctcggatgcctacaggaag
gaccagctgctcagggaaattaaagctctcccttatgagagatcctctgacagcagggag
attggcaaagccatgaggttcatctccaggaacgtcttcaagagaacccttccaggagct
catgtgagaagaatcgccacgttttttagcaatggtcagtcggccgatgcccagaccatt
accacagctgccatggagttcagtgccctggacattgtcccggtggtgattgcatttcga
aacgtgccctcagtcaagcgtgccttttcgattgatgacactggcacgttccaagtcatt
gtggttccttccgggtctgacgaagtgccagcattagagagactccagcggtgcactttc
tgctatgacctatgcaagccagatgcttcttgcgaccaagccaaaccaccccccattcag
tcctacctggatgctgcattcctgctagatggctctcggcacatgggaagtgcagaattt
gaagacatgagagacttcctggaggcactgctagatcactttgaaatcacttcagagcca
gagacatctgtcactggagacagggtggccctactgagccatgctcccctcggcttccta
cccaacacccagaggagtccggttagaagtgagttcaacctaaccacctatagcagtaag
cgcctcatgaagagacacgtggggcaagcagtccagcagctgaatggagatgctttcctc
ggtcacgccctcaggtgggcactggacaatgtctttttaaacacacccaatttgagaaga
aacaaagtcatatttgtgatatctgctggggaaaccagcctcctggatgcggagacctta
aaaaaagagtctctacgagccaaatgtcatgggtacgctctctttgtgttttccttgggc
cctgactggaatgacaaagaactggaagacctgcccagccaccctgtagaccagcacttg
atccagcttggccgaattcataaacctgaccacggatacagtgtaaagtttgtgaagtcc
ttcataagctccatcaggcatgggataaacaagtatccaccagtcaacttcaaagcccag
tgcaacagactccgctctacggatctgaagccgcccccacgccaatttcgaagctttgtt
ccgggaccacagaaagctatcctcaaagaccacgcaccagaggcagcaaagctctttcaa
gataaaaaacgcctttcaagtatcctgagaggcggcagagctgctatttcaagtctttcc
agaagcacacactatacctttaaacaggggaaagaagcaatgaaagctacttccaaactc
agtaaacgaagtgactga
DBGET
integrated database retrieval system
